These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8203#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 914 fasta sequence [GCTACGTGACGGCATGACAGTGTTTTTTTTTTTTTTTTTTATCAGATATGCTCTAGATACATATCTTGTGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAGAGATTATTACATATGTGTTAAGAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAGACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCGAAGCCGATGATACGGACAAAGGCATCGGGGGTAGGGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCATCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAATACCTGCCATCGTAGTACCCGGGAGACCTGTGGTTCTCACGGTAGACGAATCCAACCTTGCTGAACTCGAGACAAGGCACCCACTTGGATCGAAGCAGGTACTCGATCTGCTTCAAAAGATCCTCCACGGTGAGTGGTGGCAGGTACGATAAGGTATCGATATTCTTTATTGCGTGCAGTTGGACAAATCTGGGTGATTATTGGAAGATCATCCGGTAGCACCTGCAGCTTCTTCTGCGACTTGGGATCCCTGTTGCAGAGTGCAGATGAGGTTGCGATCCCCGTACACATTGTCCACGCGACATGTTGTTGGCCAGAACTTGGCACCCCGAAGCCACGCTGCAGGGAACGCAGCGTACTCCCTGGAGTACGGCTTAGTCCATGAGTC] [+] EMBL CF332929 [GCTACGTGACGGCATGACAGTGTTTTTTTTTTTTTTTTTTATCAGATATGCTCTAGATACATATCTTGTGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAGAGATTATTACATATGTGTTAAGAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAGACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCGAAGCCGATGATACGGACAAAGGCATCGGGGGTAGGGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCATCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAATACCTGCCATCGTAGTACCCGGGAGACCTGTGGTTCTCACGGTAGACGAATCCAACCTTGCTGAACTCGAG ] [-] EMBL BE230159 [ TTGTCGAAGCCGATGATACGGACAAAGGCATC AGGGTA GGCCTTCTTGGCCTCGTCGAGCTCCTTGAGCACCTGGGTGGCATCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAATACCTGCCATCGTAGTATCCGGGAGACCTGTGGTTCTCACGGTAGACGAACCCAACCTTGCTGAACTCGAGACAAGGCACCCACTTGGATCGAAGCAGGTACTCGATCTGCTTCAAAAGATCCTCCACGGTGAGTGGTGGCAGGTACGATAAGGTATCGATATTCTTTATTGCGTGCAGTTGGACAAATCTGGGTGATTATTGGAAGATCATCCGGTAGCACCTGCAGCTTCTTCTGCGACTTGGGATCCCTGTTGCAGAGTGCAGATGAGGTTGCGATCCCCGTACACATTGTCCACGCGACATGTTGTTGGCCAGAACTTGGCACCCCGAAGCCACGCTGCAGGGAACGCAGCGTACTCCCTGGAGTACGGCTTAGTCCATGAGTC] consensusID : consensus_8203#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 450 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCAAATATGCTCTAAATACATA-TCTTGGGTGTATAT-AGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAGAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCAAAGCCGATGATACGGACAAAGGCATCGGGGCTCGTGCCGAATTCGGCACG] [+] EMBL CF297915 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCAAATATGCTCTAAATACATA TCTTGGGTGTATAT AGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATTTGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTGGGCGATGAAACTAATCAACTGCACCTGCCTGACGTTGTCAAAGCCGATGAT ] [+] EMBL CF334475 [ TTTTTTTTTTTTTTTTTTTTATCAAATATGCTCTAAATACATATTCTTGGGTGTATATAAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAGAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCAAAGCCGATGATA ] [-] EMBL BE229927 [ TATCAGATATGCTCTAGATACATA TCTTGTGTGTATAT AGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAGAGATTATTACATATGTGTTAAGAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAGACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCGAAGCCGATGATACGGACAAAGGCATCGGGGCTCGTGCCGAATTCGGCACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8203#0 GCTACGTGACGGCATGACAGTGTTTTTTTTTTTTTTTTTTATCAGATATGCTCTAGATAC 60 consensus_8203#1 ----------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCAAATATGCTCTAAATAC 50 * * ********************** ********** **** consensus_8203#0 ATATCTTGTGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTG 120 consensus_8203#1 ATATCTTGGGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTG 110 ******** *************************************************** consensus_8203#0 TAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAGAGATTATTACATATGTGTTA 180 consensus_8203#1 TAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTA 170 **************************** ********** * ****************** consensus_8203#0 AGAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATAT 240 consensus_8203#1 AAAGCAGAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATAT 230 * *************** ****************************************** consensus_8203#0 TATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCA 300 consensus_8203#1 TATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCA 290 ************************************************************ consensus_8203#0 GCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAGACTCCTCGCAACCTG 360 consensus_8203#1 GCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTG 350 ******************************************** *************** consensus_8203#0 GGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCGAAGCCGATGA 420 consensus_8203#1 GGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCAAAGCCGATGA 410 ************************************************* ********** consensus_8203#0 TACGGACAAAGGCATCGGGGGTAGGGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTG 480 consensus_8203#1 TACGGACAAAGGCATCGGGGCTCGTGCCGAATTCGGCACG-------------------- 450 ******************** * * *** ** * * * consensus_8203#0 GGTGGCATCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAATACCTGCCATCGTA 540 consensus_8203#1 ------------------------------------------------------------ consensus_8203#0 GTACCCGGGAGACCTGTGGTTCTCACGGTAGACGAATCCAACCTTGCTGAACTCGAGACA 600 consensus_8203#1 ------------------------------------------------------------ consensus_8203#0 AGGCACCCACTTGGATCGAAGCAGGTACTCGATCTGCTTCAAAAGATCCTCCACGGTGAG 660 consensus_8203#1 ------------------------------------------------------------ consensus_8203#0 TGGTGGCAGGTACGATAAGGTATCGATATTCTTTATTGCGTGCAGTTGGACAAATCTGGG 720 consensus_8203#1 ------------------------------------------------------------ consensus_8203#0 TGATTATTGGAAGATCATCCGGTAGCACCTGCAGCTTCTTCTGCGACTTGGGATCCCTGT 780 consensus_8203#1 ------------------------------------------------------------ consensus_8203#0 TGCAGAGTGCAGATGAGGTTGCGATCCCCGTACACATTGTCCACGCGACATGTTGTTGGC 840 consensus_8203#1 ------------------------------------------------------------ consensus_8203#0 CAGAACTTGGCACCCCGAAGCCACGCTGCAGGGAACGCAGCGTACTCCCTGGAGTACGGC 900 consensus_8203#1 ------------------------------------------------------------ consensus_8203#0 TTAGTCCATGAGTC 914 consensus_8203#1 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||