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Oryza sativa
cluster # 8206 cluster # 8206       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8206#0 length = 1171 sequences # 3  
consensus_8206#1 length = 652 sequences # 2  

consensusID : consensus_8206#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1171
fasta sequence
                              [CTGTTGAACTTGACTCTNAGNCCGACTTTGTNAAATGACTTGANANGGTGTANGATAAGTGGGAACCCTCGGNCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGAANCGGGGCCTGGCCCCTCCTTTTGGCTCTAAACGCCCGAGTCCCTCGGGCCGAACCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGNGGCGGNACATCTGTTNAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAACTTAATAGTACTCATTTGGCTCCAGAGGGGCAGGAGCGACCAAAAATGGGCTTCGTCACGGCGGCGGCCGACGCGGTGGTGGCGCTGCTCTCCTTGACCATGGCGGTGGCGGCGCCGCTGTTCGACGCCCAGGTCGTCCTCCCTCGCGGCCTCTACCCGGCGCCGCTCGTCGGCATCCACCGGTGGTTCGCCGCCGAGTTCGGCCACTACCTCGTCGCCGACCCGCCGCCCTTCTTCCGCGGCCTCGTTTGGCTCGACCTCGCCTTCCTCTGGCCGGTCTGCGTCGCCAACCTCTACGGCATCCTCGCGCGCCGCCCCTGGTCCGCCGCCACCTCCATCATGGCGGGCGTCTACGTGCTCACCTACATGTCTGCAATCTTCGGAGAGATGCTGGGCTCAGGAAGAACAACACCGAAGCTGATTCAGCTGTACGTTCCATTCGCTCTGGCTGCTGTAACTGCAGTTCTGCGTGGTTTCTGCTCATGCTCAGCACAGGCTACTGCTGTTGCATCTCATGCCCCAACTGCTCGGAAGAAAAGGCTCTAGATCAGATGCCATCCGACGGGAGCGGCAGCCATCAGTTATGGTGTTGGCACCCAATTGCCTATTGGTGACCTTAAAGATAGTTGGACCATACATGAGGGCAAACAAAGTAATCTCTCGTTTTAAGTTGTCATTTTATTTGTTTTTTTTTCAAATCGATGTATTATGATTCAATGTTAAAGAGTTACTACATTTGCCTCAAGCAGCTTACAAAGTAATCTCTT]

[-] EMBL AU181113             [CTGTTGAACTTGACTCTNAGNCCGACTTTGTNAAATGACTTGANANGGTGTANGATAAGTGGGAACCCTCGGNCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGAANCGGGGCCTGGCCCCTCCTTTTGGCTCTAAACGCCCGAGTCCCTCGGGCCGAACCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGNGGCGGNACATCTGTTNAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTGATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL AU161529             [    TGAACTTNACTCT AGTCCGACTTTGTAAAATGACTTGACAN GTGTANGATAAGTGNGANCCCTCGGNCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGAANCGGGGCCTGGCCCCTCCTTTTGGCTCTAAACGCCCGAGTCCCTCGGGCCGANCCGGGCGGAAGACATTGTCAGGTGGNGAGTTTGGCTGNGGCGGNACATCTGTTNAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAANANGGTAAAAGCTCGTTTGATTCTGATTTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AK108338             [                                                                                                              TTATTCCGTGAGTCGGAAGCGGGGCCTGGCCCCTCCTTTTGGCTCT AAGGCCCGAGTCCCTCGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAACTTAATAGTACTCATTTGGCTCCAGAGGGGCAGGAGCGACCAAAAATGGGCTTCGTCACGGCGGCGGCCGACGCGGTGGTGGCGCTGCTCTCCTTGACCATGGCGGTGGCGGCGCCGCTGTTCGACGCCCAGGTCGTCCTCCCTCGCGGCCTCTACCCGGCGCCGCTCGTCGGCATCCACCGGTGGTTCGCCGCCGAGTTCGGCCACTACCTCGTCGCCGACCCGCCGCCCTTCTTCCGCGGCCTCGTTTGGCTCGACCTCGCCTTCCTCTGGCCGGTCTGCGTCGCCAACCTCTACGGCATCCTCGCGCGCCGCCCCTGGTCCGCCGCCACCTCCATCATGGCGGGCGTCTACGTGCTCACCTACATGTCTGCAATCTTCGGAGAGATGCTGGGCTCAGGAAGAACAACACCGAAGCTGATTCAGCTGTACGTTCCATTCGCTCTGGCTGCTGTAACTGCAGTTCTGCGTGGTTTCTGCTCATGCTCAGCACAGGCTACTGCTGTTGCATCTCATGCCCCAACTGCTCGGAAGAAAAGGCTCTAGATCAGATGCCATCCGACGGGAGCGGCAGCCATCAGTTATGGTGTTGGCACCCAATTGCCTATTGGTGACCTTAAAGATAGTTGGACCATACATGAGGGCAAACAAAGTAATCTCTCGTTTTAAGTTGTCATTTTATTTGTTTTTTTTTCAAATCGATGTATTATGATTCAATGTTAAAGAGTTACTACATTTGCCTCAAGCAGCTTACAAAGTAATCTCTT]


>consensus_8206#0 CTGTTGAACTTGACTCTNAGNCCGACTTTGTNAAATGACTTGANANGGTGTANGATAAGT GGGAACCCTCGGNCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTG AGTCGGAANCGGGGCCTGGCCCCTCCTTTTGGCTCTAAACGCCCGAGTCCCTCGGGCCGA ACCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGNGGCGGNACATCTGTTNAAAGA TAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGG TAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTATC GATCCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAACTTAATAGTACTCATT TGGCTCCAGAGGGGCAGGAGCGACCAAAAATGGGCTTCGTCACGGCGGCGGCCGACGCGG TGGTGGCGCTGCTCTCCTTGACCATGGCGGTGGCGGCGCCGCTGTTCGACGCCCAGGTCG TCCTCCCTCGCGGCCTCTACCCGGCGCCGCTCGTCGGCATCCACCGGTGGTTCGCCGCCG AGTTCGGCCACTACCTCGTCGCCGACCCGCCGCCCTTCTTCCGCGGCCTCGTTTGGCTCG ACCTCGCCTTCCTCTGGCCGGTCTGCGTCGCCAACCTCTACGGCATCCTCGCGCGCCGCC CCTGGTCCGCCGCCACCTCCATCATGGCGGGCGTCTACGTGCTCACCTACATGTCTGCAA TCTTCGGAGAGATGCTGGGCTCAGGAAGAACAACACCGAAGCTGATTCAGCTGTACGTTC CATTCGCTCTGGCTGCTGTAACTGCAGTTCTGCGTGGTTTCTGCTCATGCTCAGCACAGG CTACTGCTGTTGCATCTCATGCCCCAACTGCTCGGAAGAAAAGGCTCTAGATCAGATGCC ATCCGACGGGAGCGGCAGCCATCAGTTATGGTGTTGGCACCCAATTGCCTATTGGTGACC TTAAAGATAGTTGGACCATACATGAGGGCAAACAAAGTAATCTCTCGTTTTAAGTTGTCA TTTTATTTGTTTTTTTTTCAAATCGATGTATTATGATTCAATGTTAAAGAGTTACTACAT TTGCCTCAAGCAGCTTACAAAGTAATCTCTT



consensusID : consensus_8206#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 652
fasta sequence
                              [CCAAAAATGGGCTTCGTCACGGCGGCGGCCGACGCGGTGGTGGCGCTGCTCTCCTTGACCATGGCGGTGGCGGCGCCGCTGTTCGACGCCCAGGTCGTCCTCCCTCGCGGCCTCTACCCGGCGCCGCTCGTCGGCATCCACCGGTGGTTCGCCGCCGAGTTCGGCCACTACCTCGTCGCCGACCCGCCGCCCTTCTTCCGCGGCCTCGTTTGGCTCGACCTCGCCTTCCTCTGGCCGGTCTGCGTCGCCAACCTCTACGGCATCCTCGCGCGCCGCCCCTGGTCCGCCGCCACCTCCATCATGGCGGGCGTCTACGTGCTCACCTACATGTCTGCAATCTTCGGAGAGATGCTGGGCTCAGGAAGAACAACACCGAAGCTGATTCAGCTGTACGTTCCATTCGCTCTGGCTGCTGTAACTGCAGTTCTGCGTGGTTTCTGCTCATGCTCAGCACAGGCTACTGCTGTTGCATCTCATGCCCCAACTGCTCGGAAGAAAAGGCTCTAGATCAGATGTAAGTTTACAACATATGTCCTAAAAGAGATCAGATGTAAGTATCACTAGATGCAAGATGCACACCCAAAAGAGAATTGATGCACACACTTGTACAGTTTACCAGTACCATTCACTATATTCCGATTCACTCGGATGT]

[+] EMBL AK108306             [CCAAAAATGGGCTTCGTCACGGCGGCGGCCGACGCGGTGGTGGCGCTGCTCTCCTTGACCATGGCGGTGGCGGCGCCGCTGTTCGACGCCCAGGTCGTCCTCCCTCGCGGCCTCTACCCGGCGCCGCTCGTCGGCATCCACCGGTGGTTCGCCGCCGAGTTCGGCCACTACCTCGTCGCCGACCCGCCGCCCTTCTTCCGCGGCCTCGTTTGGCTCGACCTCGCCTTCCTCTGGCCGGTCTGCGTCGCCAACCTCTACGGCATCCTCGCGCGCCGCCCCTGGTCCGCCGCCACCTCCATCATGGCGGGCGTCTACGTGCTCACCTACATGTCTGCAATCTTCGGAGAGATGCTGGGCTCAGGAAGAACAACACCGAAGCTGATTCAGCTGTACGTTCCATTCGCTCTGGCTGCTGTAACTGCAGTTCTGCGTGGTTTCTGCTCATGCTCAGCACAGGCTACTGCTGTTGCATCTCATGCCCCAACTGCTCGGAAGAAAAGGCTCTAGATCAGATGTAAGTTTACAACATATGTCCTAAAAGAGATCAGATGTAAGTATCACTAGATGCAAGATGCACACCCAAAAGAGAATTGATGCACACACTTGTACAGTTTACCAGTACCATTCACTATATTCCGATTCACTCGGATGT]
[+] EMBL AU163233             [                TCACGGCGGCGGCCGACGCGGTGGTGGCGCTGCTCTCCTTGACCATGGCGGTGGCGGCGCCGCTGTTCGACGCCCAGGTCGTCCTCCCTCGCGGCCTCTACCCGGCGCCGCTCGTCGGCATCCACCGGTGGTTCGCCGCCGAGTTCGGCCACTACCTCGTCGNCGACCCGGCGNCCTTCTTCCGCGGCCTCGTTTGGCTCGACCTCGTCTTCCTCTGGCCGGTCTGCGTCGCaa                                                                                                                                                                                                                                                                                                                                                                                                                  ]


>consensus_8206#1 CCAAAAATGGGCTTCGTCACGGCGGCGGCCGACGCGGTGGTGGCGCTGCTCTCCTTGACC ATGGCGGTGGCGGCGCCGCTGTTCGACGCCCAGGTCGTCCTCCCTCGCGGCCTCTACCCG GCGCCGCTCGTCGGCATCCACCGGTGGTTCGCCGCCGAGTTCGGCCACTACCTCGTCGCC GACCCGCCGCCCTTCTTCCGCGGCCTCGTTTGGCTCGACCTCGCCTTCCTCTGGCCGGTC TGCGTCGCCAACCTCTACGGCATCCTCGCGCGCCGCCCCTGGTCCGCCGCCACCTCCATC ATGGCGGGCGTCTACGTGCTCACCTACATGTCTGCAATCTTCGGAGAGATGCTGGGCTCA GGAAGAACAACACCGAAGCTGATTCAGCTGTACGTTCCATTCGCTCTGGCTGCTGTAACT GCAGTTCTGCGTGGTTTCTGCTCATGCTCAGCACAGGCTACTGCTGTTGCATCTCATGCC CCAACTGCTCGGAAGAAAAGGCTCTAGATCAGATGTAAGTTTACAACATATGTCCTAAAA GAGATCAGATGTAAGTATCACTAGATGCAAGATGCACACCCAAAAGAGAATTGATGCACA CACTTGTACAGTTTACCAGTACCATTCACTATATTCCGATTCACTCGGATGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8206#0      CTGTTGAACTTGACTCTNAGNCCGACTTTGTNAAATGACTTGANANGGTGTANGATAAGT 60
consensus_8206#1      ------------------------------------------------------------
                                                                                  

consensus_8206#0      GGGAACCCTCGGNCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTG 120
consensus_8206#1      ------------------------------------------------------------
                                                                                  

consensus_8206#0      AGTCGGAANCGGGGCCTGGCCCCTCCTTTTGGCTCTAAACGCCCGAGTCCCTCGGGCCGA 180
consensus_8206#1      ------------------------------------------------------------
                                                                                  

consensus_8206#0      ACCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGNGGCGGNACATCTGTTNAAAGA 240
consensus_8206#1      ------------------------------------------------------------
                                                                                  

consensus_8206#0      TAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGG 300
consensus_8206#1      ------------------------------------------------------------
                                                                                  

consensus_8206#0      TAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTATC 360
consensus_8206#1      ------------------------------------------------------------
                                                                                  

consensus_8206#0      GATCCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAACTTAATAGTACTCATT 420
consensus_8206#1      ------------------------------------------------------------
                                                                                  

consensus_8206#0      TGGCTCCAGAGGGGCAGGAGCGACCAAAAATGGGCTTCGTCACGGCGGCGGCCGACGCGG 480
consensus_8206#1      -----------------------CCAAAAATGGGCTTCGTCACGGCGGCGGCCGACGCGG 37
                                             *************************************

consensus_8206#0      TGGTGGCGCTGCTCTCCTTGACCATGGCGGTGGCGGCGCCGCTGTTCGACGCCCAGGTCG 540
consensus_8206#1      TGGTGGCGCTGCTCTCCTTGACCATGGCGGTGGCGGCGCCGCTGTTCGACGCCCAGGTCG 97
                      ************************************************************

consensus_8206#0      TCCTCCCTCGCGGCCTCTACCCGGCGCCGCTCGTCGGCATCCACCGGTGGTTCGCCGCCG 600
consensus_8206#1      TCCTCCCTCGCGGCCTCTACCCGGCGCCGCTCGTCGGCATCCACCGGTGGTTCGCCGCCG 157
                      ************************************************************

consensus_8206#0      AGTTCGGCCACTACCTCGTCGCCGACCCGCCGCCCTTCTTCCGCGGCCTCGTTTGGCTCG 660
consensus_8206#1      AGTTCGGCCACTACCTCGTCGCCGACCCGCCGCCCTTCTTCCGCGGCCTCGTTTGGCTCG 217
                      ************************************************************

consensus_8206#0      ACCTCGCCTTCCTCTGGCCGGTCTGCGTCGCCAACCTCTACGGCATCCTCGCGCGCCGCC 720
consensus_8206#1      ACCTCGCCTTCCTCTGGCCGGTCTGCGTCGCCAACCTCTACGGCATCCTCGCGCGCCGCC 277
                      ************************************************************

consensus_8206#0      CCTGGTCCGCCGCCACCTCCATCATGGCGGGCGTCTACGTGCTCACCTACATGTCTGCAA 780
consensus_8206#1      CCTGGTCCGCCGCCACCTCCATCATGGCGGGCGTCTACGTGCTCACCTACATGTCTGCAA 337
                      ************************************************************

consensus_8206#0      TCTTCGGAGAGATGCTGGGCTCAGGAAGAACAACACCGAAGCTGATTCAGCTGTACGTTC 840
consensus_8206#1      TCTTCGGAGAGATGCTGGGCTCAGGAAGAACAACACCGAAGCTGATTCAGCTGTACGTTC 397
                      ************************************************************

consensus_8206#0      CATTCGCTCTGGCTGCTGTAACTGCAGTTCTGCGTGGTTTCTGCTCATGCTCAGCACAGG 900
consensus_8206#1      CATTCGCTCTGGCTGCTGTAACTGCAGTTCTGCGTGGTTTCTGCTCATGCTCAGCACAGG 457
                      ************************************************************

consensus_8206#0      CTACTGCTGTTGCATCTCATGCCCCAACTGCTCGGAAGAAAAGGCTCTAGATCAGATGCC 960
consensus_8206#1      CTACTGCTGTTGCATCTCATGCCCCAACTGCTCGGAAGAAAAGGCTCTAGATCAGATGTA 517
                      **********************************************************  

consensus_8206#0      ATCCGACGGGA-GCGGCAGCCATCAGTTATGGTGTTGGCACC--CAATTGCCTATTGGTG 1017
consensus_8206#1      AGTTTACAACATATGTCCTAAAAGAGATCAGATGTAAGTATCACTAGATGCAAGATGCAC 577
                      *    **   *   * *    *  ** *  * ***  * * *   *  ***    **   

consensus_8206#0      ACCTTAAAGATAGTTGGACCATACATGAGGGCAAACAAAGTAATCTCTCGTTTTAAGTTG 1077
consensus_8206#1      ACCCAAAAGAGAATTGATGCACACACTTGTACAGTTTAC-CAGTACCATTCACTATATT- 635
                      ***  ***** * ***   ** ***   *  **    *   * *  *      **  ** 

consensus_8206#0      TCATTTTATTTGTTTTTTTTTCAAATCGATGTATTATGATTCAATGTTAAAGAGTTACTA 1137
consensus_8206#1      CCGATTCACTCGGATGT------------------------------------------- 652
                       *  ** * * *  * *                                           

consensus_8206#0      CATTTGCCTCAAGCAGCTTACAAAGTAATCTCTT 1171
consensus_8206#1      ----------------------------------
                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)