These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8206#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1171 fasta sequence [CTGTTGAACTTGACTCTNAGNCCGACTTTGTNAAATGACTTGANANGGTGTANGATAAGTGGGAACCCTCGGNCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGAANCGGGGCCTGGCCCCTCCTTTTGGCTCTAAACGCCCGAGTCCCTCGGGCCGAACCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGNGGCGGNACATCTGTTNAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAACTTAATAGTACTCATTTGGCTCCAGAGGGGCAGGAGCGACCAAAAATGGGCTTCGTCACGGCGGCGGCCGACGCGGTGGTGGCGCTGCTCTCCTTGACCATGGCGGTGGCGGCGCCGCTGTTCGACGCCCAGGTCGTCCTCCCTCGCGGCCTCTACCCGGCGCCGCTCGTCGGCATCCACCGGTGGTTCGCCGCCGAGTTCGGCCACTACCTCGTCGCCGACCCGCCGCCCTTCTTCCGCGGCCTCGTTTGGCTCGACCTCGCCTTCCTCTGGCCGGTCTGCGTCGCCAACCTCTACGGCATCCTCGCGCGCCGCCCCTGGTCCGCCGCCACCTCCATCATGGCGGGCGTCTACGTGCTCACCTACATGTCTGCAATCTTCGGAGAGATGCTGGGCTCAGGAAGAACAACACCGAAGCTGATTCAGCTGTACGTTCCATTCGCTCTGGCTGCTGTAACTGCAGTTCTGCGTGGTTTCTGCTCATGCTCAGCACAGGCTACTGCTGTTGCATCTCATGCCCCAACTGCTCGGAAGAAAAGGCTCTAGATCAGATGCCATCCGACGGGAGCGGCAGCCATCAGTTATGGTGTTGGCACCCAATTGCCTATTGGTGACCTTAAAGATAGTTGGACCATACATGAGGGCAAACAAAGTAATCTCTCGTTTTAAGTTGTCATTTTATTTGTTTTTTTTTCAAATCGATGTATTATGATTCAATGTTAAAGAGTTACTACATTTGCCTCAAGCAGCTTACAAAGTAATCTCTT] [-] EMBL AU181113 [CTGTTGAACTTGACTCTNAGNCCGACTTTGTNAAATGACTTGANANGGTGTANGATAAGTGGGAACCCTCGGNCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGAANCGGGGCCTGGCCCCTCCTTTTGGCTCTAAACGCCCGAGTCCCTCGGGCCGAACCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGNGGCGGNACATCTGTTNAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTGATT ] [-] EMBL AU161529 [ TGAACTTNACTCT AGTCCGACTTTGTAAAATGACTTGACAN GTGTANGATAAGTGNGANCCCTCGGNCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGAANCGGGGCCTGGCCCCTCCTTTTGGCTCTAAACGCCCGAGTCCCTCGGGCCGANCCGGGCGGAAGACATTGTCAGGTGGNGAGTTTGGCTGNGGCGGNACATCTGTTNAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAANANGGTAAAAGCTCGTTTGATTCTGATTTCC ] [+] EMBL AK108338 [ TTATTCCGTGAGTCGGAAGCGGGGCCTGGCCCCTCCTTTTGGCTCT AAGGCCCGAGTCCCTCGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAACTTAATAGTACTCATTTGGCTCCAGAGGGGCAGGAGCGACCAAAAATGGGCTTCGTCACGGCGGCGGCCGACGCGGTGGTGGCGCTGCTCTCCTTGACCATGGCGGTGGCGGCGCCGCTGTTCGACGCCCAGGTCGTCCTCCCTCGCGGCCTCTACCCGGCGCCGCTCGTCGGCATCCACCGGTGGTTCGCCGCCGAGTTCGGCCACTACCTCGTCGCCGACCCGCCGCCCTTCTTCCGCGGCCTCGTTTGGCTCGACCTCGCCTTCCTCTGGCCGGTCTGCGTCGCCAACCTCTACGGCATCCTCGCGCGCCGCCCCTGGTCCGCCGCCACCTCCATCATGGCGGGCGTCTACGTGCTCACCTACATGTCTGCAATCTTCGGAGAGATGCTGGGCTCAGGAAGAACAACACCGAAGCTGATTCAGCTGTACGTTCCATTCGCTCTGGCTGCTGTAACTGCAGTTCTGCGTGGTTTCTGCTCATGCTCAGCACAGGCTACTGCTGTTGCATCTCATGCCCCAACTGCTCGGAAGAAAAGGCTCTAGATCAGATGCCATCCGACGGGAGCGGCAGCCATCAGTTATGGTGTTGGCACCCAATTGCCTATTGGTGACCTTAAAGATAGTTGGACCATACATGAGGGCAAACAAAGTAATCTCTCGTTTTAAGTTGTCATTTTATTTGTTTTTTTTTCAAATCGATGTATTATGATTCAATGTTAAAGAGTTACTACATTTGCCTCAAGCAGCTTACAAAGTAATCTCTT] consensusID : consensus_8206#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 652 fasta sequence [CCAAAAATGGGCTTCGTCACGGCGGCGGCCGACGCGGTGGTGGCGCTGCTCTCCTTGACCATGGCGGTGGCGGCGCCGCTGTTCGACGCCCAGGTCGTCCTCCCTCGCGGCCTCTACCCGGCGCCGCTCGTCGGCATCCACCGGTGGTTCGCCGCCGAGTTCGGCCACTACCTCGTCGCCGACCCGCCGCCCTTCTTCCGCGGCCTCGTTTGGCTCGACCTCGCCTTCCTCTGGCCGGTCTGCGTCGCCAACCTCTACGGCATCCTCGCGCGCCGCCCCTGGTCCGCCGCCACCTCCATCATGGCGGGCGTCTACGTGCTCACCTACATGTCTGCAATCTTCGGAGAGATGCTGGGCTCAGGAAGAACAACACCGAAGCTGATTCAGCTGTACGTTCCATTCGCTCTGGCTGCTGTAACTGCAGTTCTGCGTGGTTTCTGCTCATGCTCAGCACAGGCTACTGCTGTTGCATCTCATGCCCCAACTGCTCGGAAGAAAAGGCTCTAGATCAGATGTAAGTTTACAACATATGTCCTAAAAGAGATCAGATGTAAGTATCACTAGATGCAAGATGCACACCCAAAAGAGAATTGATGCACACACTTGTACAGTTTACCAGTACCATTCACTATATTCCGATTCACTCGGATGT] [+] EMBL AK108306 [CCAAAAATGGGCTTCGTCACGGCGGCGGCCGACGCGGTGGTGGCGCTGCTCTCCTTGACCATGGCGGTGGCGGCGCCGCTGTTCGACGCCCAGGTCGTCCTCCCTCGCGGCCTCTACCCGGCGCCGCTCGTCGGCATCCACCGGTGGTTCGCCGCCGAGTTCGGCCACTACCTCGTCGCCGACCCGCCGCCCTTCTTCCGCGGCCTCGTTTGGCTCGACCTCGCCTTCCTCTGGCCGGTCTGCGTCGCCAACCTCTACGGCATCCTCGCGCGCCGCCCCTGGTCCGCCGCCACCTCCATCATGGCGGGCGTCTACGTGCTCACCTACATGTCTGCAATCTTCGGAGAGATGCTGGGCTCAGGAAGAACAACACCGAAGCTGATTCAGCTGTACGTTCCATTCGCTCTGGCTGCTGTAACTGCAGTTCTGCGTGGTTTCTGCTCATGCTCAGCACAGGCTACTGCTGTTGCATCTCATGCCCCAACTGCTCGGAAGAAAAGGCTCTAGATCAGATGTAAGTTTACAACATATGTCCTAAAAGAGATCAGATGTAAGTATCACTAGATGCAAGATGCACACCCAAAAGAGAATTGATGCACACACTTGTACAGTTTACCAGTACCATTCACTATATTCCGATTCACTCGGATGT] [+] EMBL AU163233 [ TCACGGCGGCGGCCGACGCGGTGGTGGCGCTGCTCTCCTTGACCATGGCGGTGGCGGCGCCGCTGTTCGACGCCCAGGTCGTCCTCCCTCGCGGCCTCTACCCGGCGCCGCTCGTCGGCATCCACCGGTGGTTCGCCGCCGAGTTCGGCCACTACCTCGTCGNCGACCCGGCGNCCTTCTTCCGCGGCCTCGTTTGGCTCGACCTCGTCTTCCTCTGGCCGGTCTGCGTCGCaa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8206#0 CTGTTGAACTTGACTCTNAGNCCGACTTTGTNAAATGACTTGANANGGTGTANGATAAGT 60 consensus_8206#1 ------------------------------------------------------------ consensus_8206#0 GGGAACCCTCGGNCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTG 120 consensus_8206#1 ------------------------------------------------------------ consensus_8206#0 AGTCGGAANCGGGGCCTGGCCCCTCCTTTTGGCTCTAAACGCCCGAGTCCCTCGGGCCGA 180 consensus_8206#1 ------------------------------------------------------------ consensus_8206#0 ACCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGNGGCGGNACATCTGTTNAAAGA 240 consensus_8206#1 ------------------------------------------------------------ consensus_8206#0 TAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGG 300 consensus_8206#1 ------------------------------------------------------------ consensus_8206#0 TAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTATC 360 consensus_8206#1 ------------------------------------------------------------ consensus_8206#0 GATCCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAACTTAATAGTACTCATT 420 consensus_8206#1 ------------------------------------------------------------ consensus_8206#0 TGGCTCCAGAGGGGCAGGAGCGACCAAAAATGGGCTTCGTCACGGCGGCGGCCGACGCGG 480 consensus_8206#1 -----------------------CCAAAAATGGGCTTCGTCACGGCGGCGGCCGACGCGG 37 ************************************* consensus_8206#0 TGGTGGCGCTGCTCTCCTTGACCATGGCGGTGGCGGCGCCGCTGTTCGACGCCCAGGTCG 540 consensus_8206#1 TGGTGGCGCTGCTCTCCTTGACCATGGCGGTGGCGGCGCCGCTGTTCGACGCCCAGGTCG 97 ************************************************************ consensus_8206#0 TCCTCCCTCGCGGCCTCTACCCGGCGCCGCTCGTCGGCATCCACCGGTGGTTCGCCGCCG 600 consensus_8206#1 TCCTCCCTCGCGGCCTCTACCCGGCGCCGCTCGTCGGCATCCACCGGTGGTTCGCCGCCG 157 ************************************************************ consensus_8206#0 AGTTCGGCCACTACCTCGTCGCCGACCCGCCGCCCTTCTTCCGCGGCCTCGTTTGGCTCG 660 consensus_8206#1 AGTTCGGCCACTACCTCGTCGCCGACCCGCCGCCCTTCTTCCGCGGCCTCGTTTGGCTCG 217 ************************************************************ consensus_8206#0 ACCTCGCCTTCCTCTGGCCGGTCTGCGTCGCCAACCTCTACGGCATCCTCGCGCGCCGCC 720 consensus_8206#1 ACCTCGCCTTCCTCTGGCCGGTCTGCGTCGCCAACCTCTACGGCATCCTCGCGCGCCGCC 277 ************************************************************ consensus_8206#0 CCTGGTCCGCCGCCACCTCCATCATGGCGGGCGTCTACGTGCTCACCTACATGTCTGCAA 780 consensus_8206#1 CCTGGTCCGCCGCCACCTCCATCATGGCGGGCGTCTACGTGCTCACCTACATGTCTGCAA 337 ************************************************************ consensus_8206#0 TCTTCGGAGAGATGCTGGGCTCAGGAAGAACAACACCGAAGCTGATTCAGCTGTACGTTC 840 consensus_8206#1 TCTTCGGAGAGATGCTGGGCTCAGGAAGAACAACACCGAAGCTGATTCAGCTGTACGTTC 397 ************************************************************ consensus_8206#0 CATTCGCTCTGGCTGCTGTAACTGCAGTTCTGCGTGGTTTCTGCTCATGCTCAGCACAGG 900 consensus_8206#1 CATTCGCTCTGGCTGCTGTAACTGCAGTTCTGCGTGGTTTCTGCTCATGCTCAGCACAGG 457 ************************************************************ consensus_8206#0 CTACTGCTGTTGCATCTCATGCCCCAACTGCTCGGAAGAAAAGGCTCTAGATCAGATGCC 960 consensus_8206#1 CTACTGCTGTTGCATCTCATGCCCCAACTGCTCGGAAGAAAAGGCTCTAGATCAGATGTA 517 ********************************************************** consensus_8206#0 ATCCGACGGGA-GCGGCAGCCATCAGTTATGGTGTTGGCACC--CAATTGCCTATTGGTG 1017 consensus_8206#1 AGTTTACAACATATGTCCTAAAAGAGATCAGATGTAAGTATCACTAGATGCAAGATGCAC 577 * ** * * * * ** * * *** * * * * *** ** consensus_8206#0 ACCTTAAAGATAGTTGGACCATACATGAGGGCAAACAAAGTAATCTCTCGTTTTAAGTTG 1077 consensus_8206#1 ACCCAAAAGAGAATTGATGCACACACTTGTACAGTTTAC-CAGTACCATTCACTATATT- 635 *** ***** * *** ** *** * ** * * * * ** ** consensus_8206#0 TCATTTTATTTGTTTTTTTTTCAAATCGATGTATTATGATTCAATGTTAAAGAGTTACTA 1137 consensus_8206#1 CCGATTCACTCGGATGT------------------------------------------- 652 * ** * * * * * consensus_8206#0 CATTTGCCTCAAGCAGCTTACAAAGTAATCTCTT 1171 consensus_8206#1 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||