These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8212#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 936 fasta sequence [TTTTTTTTTTTTTAGCTAGAACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAACTCACCCCCTCACCCATGCATCCAGATCCATGCATGCAGGAAACAATTACCACAACACACACAGTAAGTCTGAATCTCATCACATCCATCTCTCTCTCTCTCCTCCCCCCAATTCATTAACATCTTATACATGCATACTCCACAAAAAAAAAAAAGAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGATGATGNGTGTTGTGCCACGGGTCAAACAGGTGCTGCAGCAGGTTGTCGAAGGGCCCCTTCTGCGTCACGTTGTGCTGCACCAGGAACCCCAAGAACGCCAGCATCGCCGGATCTCCACGTAGTGGAACAGGATGAACTCGATGACGAACAGCGTCGACGACGACGCGAAGTAGGTGGCCTTGCCGGCGTCGTACCACTG-GGCGCGTCGATCAACCCGATCTTCGTCAGCACCTCAGGCAGCAGCATCCCGGCCACCCCCAGCATCGCCCACCGCCCGTTCACCAGCTCCGCCTGCACGAACCACCGCAGGTTCTCCGGGTCCTCCGCCAGACCCAACGGGTCGAACCCGTTATCGCCTGGCAAGCTGCCGTTGAGGTAGGTGGGAGAAGGGAGGCCGGGGAGCCACTCTCCCTTGGCCTCCGCCCGAACATTGCCCTAGGAAGGTAGACTTGAGCGACGCCGACGAGCGGAGGGCTGCGACCGGGGTGCGGGCGGTGACGGACGCCATGGCTTAGCTTCCCCGGCTTAGAGAGGGGAGGAAGCGAAGCGGGTGTAGTCACAAGGGTAC] [+] EMBL CF337912 [TTTTTTTTTTTTTAGCTAGAACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAACTCACCCCCTCACCCATGCATCCAGATCCATGCATGCAGGAAACAATTACCACAACACACACAGTAAGTCTGAATCTCATCACATCCATCTCTCTCTCTCTCCTCCCCCCAATTCATTAACATCTTATACATGCATACTCCACAAAAAAAAAAAAGAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGATGATGNGTGTTGTGCCACGGGTCAAACAGGTGCTGCAGCAGGTTGTCGAAGGGCCCCTTCTGCGTCACGTTGTGCTGCACCAGGAACCCCAAGAACGCCAGCATCGCCGGATCTCCACGTAGTGGAACAGGATGAACTCGATGACGAACAGCGTCGACGACGACGCGAAGTAGGTGGCCTTGCCGGCGTCGTACCACTG GGCGCGTCGATCAACCCGATCTTCGTCAGCACCTCAGGCAG ] [-] EMBL CF335841 [ CAGGATGAACTCGATGACGAACAGCGTCGACGACGACGCGAAGTAGGTGGCCTTGCCGGCGTCGTACCACTGCGGCGCGTCGATCAACCCGATCTTCGTCAGCACCTCAGGCAGCAGCATCCCGGCCACCCCCAGCATCGCCCACCGCCCGTTCACCAGCTCCGCCTGCACGAACCACCGCAGGTTCTCCGGGTCCTCCGCCAGACCCAACGGGTCGAACCCGTTATCGCCTGGCAAGCTGCCGTTGAGGTAGGTGGGAGAAGGGAGGCCGGGGAGCCACTCTCCCTTGGCCTCCGCCCGAACATTGCCCTAGGAAGGTAGACTTGAGCGACGCCGACGAGCGGAGGGCTGCGACCGGGGTGCGGGCGGTGACGGACGCCATGGCTTAGCTTCCCCGGCTTAGAGAGGGGAGGAAGCGAAGCGGGTGTAGTCACAAGGGTAC] consensusID : consensus_8212#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 591 fasta sequence [CTGTCACGATACGCTACGTAACGGCATGACA--GTGTTTTTTTTTTTTTTTTTTGACAAGCAATTAAGCGTAGTTTATCCACCATAATTAAGATCGAGACCATGAGATAGCTAGAACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAACTCACCCCCTCACCCATGCATCCAGATCCATGCATGCAGGAAACAATTACCACAACACACACAGTAAGTCTGAATCTCATCACATCCATCTCTCTCTCTCTCCTCCCCCCAATTCATTAACATCTTATACATGCATACTCCACAAAAAAAAAAAGAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGATGAT-GGTGTTGTGCCACGGGTCAGACAGGTGCTGCAGCAGGTTGTCGAAGGGCCCCTTCTGCGTCACGTTGTGCTGCACCAGGAACCCCAAGAACGCCAGCATCGCCAGCCTCCCGTTGGCGAGCTCCTTC] [+] EMBL CF299769 [CTGTCACGATACGCTACGTAACGGCATG TA GTGTTTTTTTTTTTTTTTTTTGACAAGCAATTAAGCGTAGTTTATCCACCATAATTAAGATCGAGACCATGAGATAGCTAGAACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAACTCACCCCCTCACCCATGCATCCAGATCCATGCATGCAGGAAACAATTACCACAACACACACAGTAAGTCTGAATCTCATCACATCCATCTCTCTCTCTCTCCTTCCCCCAATTCATTA ATCTTATACATGCATACTCCACAAAAAAAAAAAGAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGATGAT GGTGTTGTGCCACGGGTCAGACAGGTGCTGCAGCAGGTTGTCGAAGGGCCCCTTCTGCGTCACGTTGTGCTGCACCAGGAACCCCAAGAACGCCAGCATCGCCAGCCTCCCGTTGGCGAGCTCCTTC] [+] EMBL CF299161 [ GATACGCTACGTAACGGCATGACATTGTTTTTTTTTTTTTTTTTTTTGACAAGCAATTAAGCGTAGTTTATCCACCATAATTAAGATCGAGACCATGAGATAGCTAGAACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAACTCACCCCCTCACCCATGCATCCAGATCCATGCATGCAGGAAACAATTACCACAACACACACAGTAAGTCTGAATCTCATCACATCCATCTCTCTCTCTCTCCTCCCCCCAATTCATTAACATCCTATACATGCATACTCCACAAAAAAAAAAAGAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGATGAT GGTGTTG ] [+] EMBL CF296936 [ tCGCTACCTAACGGCATGACA GTGTTTTTTTTTTTTTTTTTTGACAAGCAATTAAGCGTAGTTTATCCACCATAATTAAGATCGAGACCATGAGATAGCTAGAACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAACTCACCCCCTCACCCATGCATCCAGATCCATGCATGCAGGAAACAATTACCACAACACACACAGTAAGTCTGAATCTCATCACATCCATCTCTCTCTCTCTCCTCCCCCCAATTCATTAACATCTTATACATGCATACTCCACAAAAAAAAAAAGAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGATGATGGGTGTTGTGCCACGGGTCAAACAGGTGCTGCAGCAGGTTGTCNAAGGGCCCCTTCTGCGTCACGTTGTGCTGCACCAGGAACCCCAAGAACGCCAGCATCGCCAGCCTCCCGTTGGCGAGCTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8212#0 ------------------------------------------------------------ consensus_8212#1 CTGTCACGATACGCTACGTAACGGCATGACAGTGTTTTTTTTTTTTTTTTTTGACAAGCA 60 consensus_8212#0 ---------------------------------TTTTTTTTTTTTTAGCTAGAACACTGC 27 consensus_8212#1 ATTAAGCGTAGTTTATCCACCATAATTAAGATCGAGACCATGAGATAGCTAGAACACTGC 120 * *************** consensus_8212#0 TGCTACCATGAGATAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAAC 87 consensus_8212#1 TGCTACCATGAGATAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAAC 180 ************************************************************ consensus_8212#0 TCACCCCCTCACCCATGCATCCAGATCCATGCATGCAGGAAACAATTACCACAACACACA 147 consensus_8212#1 TCACCCCCTCACCCATGCATCCAGATCCATGCATGCAGGAAACAATTACCACAACACACA 240 ************************************************************ consensus_8212#0 CAGTAAGTCTGAATCTCATCACATCCATCTCTCTCTCTCTCCTCCCCCCAATTCATTAAC 207 consensus_8212#1 CAGTAAGTCTGAATCTCATCACATCCATCTCTCTCTCTCTCCTCCCCCCAATTCATTAAC 300 ************************************************************ consensus_8212#0 ATCTTATACATGCATACTCCACAAAAAAAAAAAAGAAGAAACAAGAAGAGAACATCTTCC 267 consensus_8212#1 ATCTTATACATGCATACTCCACAAAAAAAAAAA-GAAGAAACAAGAAGAGAACATCTTCC 359 ********************************* ************************** consensus_8212#0 ATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGATGCCCTGGCC 327 consensus_8212#1 ATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGATGCCCTGGCC 419 ************************************************************ consensus_8212#0 CTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGATGATGNGTGTTGTGCCACG 387 consensus_8212#1 CTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGATGATGG-TGTTGTGCCACG 478 ********************************************** ************ consensus_8212#0 GGTCAAACAGGTGCTGCAGCAGGTTGTCGAAGGGCCCCTTCTGCGTCACGTTGTGCTGCA 447 consensus_8212#1 GGTCAGACAGGTGCTGCAGCAGGTTGTCGAAGGGCCCCTTCTGCGTCACGTTGTGCTGCA 538 ***** ****************************************************** consensus_8212#0 CCAGGAACCCCAAGAACGCCAGCATCGCCGGATCTCCACGTAGTGGAACAGGATGAACTC 507 consensus_8212#1 CCAGGAACCCCAAGAACGCCAGCATCGCCAG--CCTCCCGTTGGCGAGCTCCTTC----- 591 ***************************** * * * *** * ** * * consensus_8212#0 GATGACGAACAGCGTCGACGACGACGCGAAGTAGGTGGCCTTGCCGGCGTCGTACCACTG 567 consensus_8212#1 ------------------------------------------------------------ consensus_8212#0 GGCGCGTCGATCAACCCGATCTTCGTCAGCACCTCAGGCAGCAGCATCCCGGCCACCCCC 627 consensus_8212#1 ------------------------------------------------------------ consensus_8212#0 AGCATCGCCCACCGCCCGTTCACCAGCTCCGCCTGCACGAACCACCGCAGGTTCTCCGGG 687 consensus_8212#1 ------------------------------------------------------------ consensus_8212#0 TCCTCCGCCAGACCCAACGGGTCGAACCCGTTATCGCCTGGCAAGCTGCCGTTGAGGTAG 747 consensus_8212#1 ------------------------------------------------------------ consensus_8212#0 GTGGGAGAAGGGAGGCCGGGGAGCCACTCTCCCTTGGCCTCCGCCCGAACATTGCCCTAG 807 consensus_8212#1 ------------------------------------------------------------ consensus_8212#0 GAAGGTAGACTTGAGCGACGCCGACGAGCGGAGGGCTGCGACCGGGGTGCGGGCGGTGAC 867 consensus_8212#1 ------------------------------------------------------------ consensus_8212#0 GGACGCCATGGCTTAGCTTCCCCGGCTTAGAGAGGGGAGGAAGCGAAGCGGGTGTAGTCA 927 consensus_8212#1 ------------------------------------------------------------ consensus_8212#0 CAAGGGTAC 936 consensus_8212#1 --------- 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Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||