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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8212#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 936 fasta sequence
[TTTTTTTTTTTTTAGCTAGAACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAACTCACCCCCTCACCCATGCATCCAGATCCATGCATGCAGGAAACAATTACCACAACACACACAGTAAGTCTGAATCTCATCACATCCATCTCTCTCTCTCTCCTCCCCCCAATTCATTAACATCTTATACATGCATACTCCACAAAAAAAAAAAAGAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGATGATGNGTGTTGTGCCACGGGTCAAACAGGTGCTGCAGCAGGTTGTCGAAGGGCCCCTTCTGCGTCACGTTGTGCTGCACCAGGAACCCCAAGAACGCCAGCATCGCCGGATCTCCACGTAGTGGAACAGGATGAACTCGATGACGAACAGCGTCGACGACGACGCGAAGTAGGTGGCCTTGCCGGCGTCGTACCACTG-GGCGCGTCGATCAACCCGATCTTCGTCAGCACCTCAGGCAGCAGCATCCCGGCCACCCCCAGCATCGCCCACCGCCCGTTCACCAGCTCCGCCTGCACGAACCACCGCAGGTTCTCCGGGTCCTCCGCCAGACCCAACGGGTCGAACCCGTTATCGCCTGGCAAGCTGCCGTTGAGGTAGGTGGGAGAAGGGAGGCCGGGGAGCCACTCTCCCTTGGCCTCCGCCCGAACATTGCCCTAGGAAGGTAGACTTGAGCGACGCCGACGAGCGGAGGGCTGCGACCGGGGTGCGGGCGGTGACGGACGCCATGGCTTAGCTTCCCCGGCTTAGAGAGGGGAGGAAGCGAAGCGGGTGTAGTCACAAGGGTAC]
[+] EMBL CF337912 [TTTTTTTTTTTTTAGCTAGAACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAACTCACCCCCTCACCCATGCATCCAGATCCATGCATGCAGGAAACAATTACCACAACACACACAGTAAGTCTGAATCTCATCACATCCATCTCTCTCTCTCTCCTCCCCCCAATTCATTAACATCTTATACATGCATACTCCACAAAAAAAAAAAAGAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGATGATGNGTGTTGTGCCACGGGTCAAACAGGTGCTGCAGCAGGTTGTCGAAGGGCCCCTTCTGCGTCACGTTGTGCTGCACCAGGAACCCCAAGAACGCCAGCATCGCCGGATCTCCACGTAGTGGAACAGGATGAACTCGATGACGAACAGCGTCGACGACGACGCGAAGTAGGTGGCCTTGCCGGCGTCGTACCACTG GGCGCGTCGATCAACCCGATCTTCGTCAGCACCTCAGGCAG ]
[-] EMBL CF335841 [ CAGGATGAACTCGATGACGAACAGCGTCGACGACGACGCGAAGTAGGTGGCCTTGCCGGCGTCGTACCACTGCGGCGCGTCGATCAACCCGATCTTCGTCAGCACCTCAGGCAGCAGCATCCCGGCCACCCCCAGCATCGCCCACCGCCCGTTCACCAGCTCCGCCTGCACGAACCACCGCAGGTTCTCCGGGTCCTCCGCCAGACCCAACGGGTCGAACCCGTTATCGCCTGGCAAGCTGCCGTTGAGGTAGGTGGGAGAAGGGAGGCCGGGGAGCCACTCTCCCTTGGCCTCCGCCCGAACATTGCCCTAGGAAGGTAGACTTGAGCGACGCCGACGAGCGGAGGGCTGCGACCGGGGTGCGGGCGGTGACGGACGCCATGGCTTAGCTTCCCCGGCTTAGAGAGGGGAGGAAGCGAAGCGGGTGTAGTCACAAGGGTAC]
consensusID : consensus_8212#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 591 fasta sequence
[CTGTCACGATACGCTACGTAACGGCATGACA--GTGTTTTTTTTTTTTTTTTTTGACAAGCAATTAAGCGTAGTTTATCCACCATAATTAAGATCGAGACCATGAGATAGCTAGAACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAACTCACCCCCTCACCCATGCATCCAGATCCATGCATGCAGGAAACAATTACCACAACACACACAGTAAGTCTGAATCTCATCACATCCATCTCTCTCTCTCTCCTCCCCCCAATTCATTAACATCTTATACATGCATACTCCACAAAAAAAAAAAGAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGATGAT-GGTGTTGTGCCACGGGTCAGACAGGTGCTGCAGCAGGTTGTCGAAGGGCCCCTTCTGCGTCACGTTGTGCTGCACCAGGAACCCCAAGAACGCCAGCATCGCCAGCCTCCCGTTGGCGAGCTCCTTC]
[+] EMBL CF299769 [CTGTCACGATACGCTACGTAACGGCATG TA GTGTTTTTTTTTTTTTTTTTTGACAAGCAATTAAGCGTAGTTTATCCACCATAATTAAGATCGAGACCATGAGATAGCTAGAACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAACTCACCCCCTCACCCATGCATCCAGATCCATGCATGCAGGAAACAATTACCACAACACACACAGTAAGTCTGAATCTCATCACATCCATCTCTCTCTCTCTCCTTCCCCCAATTCATTA ATCTTATACATGCATACTCCACAAAAAAAAAAAGAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGATGAT GGTGTTGTGCCACGGGTCAGACAGGTGCTGCAGCAGGTTGTCGAAGGGCCCCTTCTGCGTCACGTTGTGCTGCACCAGGAACCCCAAGAACGCCAGCATCGCCAGCCTCCCGTTGGCGAGCTCCTTC]
[+] EMBL CF299161 [ GATACGCTACGTAACGGCATGACATTGTTTTTTTTTTTTTTTTTTTTGACAAGCAATTAAGCGTAGTTTATCCACCATAATTAAGATCGAGACCATGAGATAGCTAGAACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAACTCACCCCCTCACCCATGCATCCAGATCCATGCATGCAGGAAACAATTACCACAACACACACAGTAAGTCTGAATCTCATCACATCCATCTCTCTCTCTCTCCTCCCCCCAATTCATTAACATCCTATACATGCATACTCCACAAAAAAAAAAAGAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGATGAT GGTGTTG ]
[+] EMBL CF296936 [ tCGCTACCTAACGGCATGACA GTGTTTTTTTTTTTTTTTTTTGACAAGCAATTAAGCGTAGTTTATCCACCATAATTAAGATCGAGACCATGAGATAGCTAGAACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAACTCACCCCCTCACCCATGCATCCAGATCCATGCATGCAGGAAACAATTACCACAACACACACAGTAAGTCTGAATCTCATCACATCCATCTCTCTCTCTCTCCTCCCCCCAATTCATTAACATCTTATACATGCATACTCCACAAAAAAAAAAAGAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGATGATGGGTGTTGTGCCACGGGTCAAACAGGTGCTGCAGCAGGTTGTCNAAGGGCCCCTTCTGCGTCACGTTGTGCTGCACCAGGAACCCCAAGAACGCCAGCATCGCCAGCCTCCCGTTGGCGAGCTC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8212#0 ------------------------------------------------------------
consensus_8212#1 CTGTCACGATACGCTACGTAACGGCATGACAGTGTTTTTTTTTTTTTTTTTTGACAAGCA 60
consensus_8212#0 ---------------------------------TTTTTTTTTTTTTAGCTAGAACACTGC 27
consensus_8212#1 ATTAAGCGTAGTTTATCCACCATAATTAAGATCGAGACCATGAGATAGCTAGAACACTGC 120
* ***************
consensus_8212#0 TGCTACCATGAGATAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAAC 87
consensus_8212#1 TGCTACCATGAGATAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAAC 180
************************************************************
consensus_8212#0 TCACCCCCTCACCCATGCATCCAGATCCATGCATGCAGGAAACAATTACCACAACACACA 147
consensus_8212#1 TCACCCCCTCACCCATGCATCCAGATCCATGCATGCAGGAAACAATTACCACAACACACA 240
************************************************************
consensus_8212#0 CAGTAAGTCTGAATCTCATCACATCCATCTCTCTCTCTCTCCTCCCCCCAATTCATTAAC 207
consensus_8212#1 CAGTAAGTCTGAATCTCATCACATCCATCTCTCTCTCTCTCCTCCCCCCAATTCATTAAC 300
************************************************************
consensus_8212#0 ATCTTATACATGCATACTCCACAAAAAAAAAAAAGAAGAAACAAGAAGAGAACATCTTCC 267
consensus_8212#1 ATCTTATACATGCATACTCCACAAAAAAAAAAA-GAAGAAACAAGAAGAGAACATCTTCC 359
********************************* **************************
consensus_8212#0 ATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGATGCCCTGGCC 327
consensus_8212#1 ATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGATGCCCTGGCC 419
************************************************************
consensus_8212#0 CTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGATGATGNGTGTTGTGCCACG 387
consensus_8212#1 CTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGATGATGG-TGTTGTGCCACG 478
********************************************** ************
consensus_8212#0 GGTCAAACAGGTGCTGCAGCAGGTTGTCGAAGGGCCCCTTCTGCGTCACGTTGTGCTGCA 447
consensus_8212#1 GGTCAGACAGGTGCTGCAGCAGGTTGTCGAAGGGCCCCTTCTGCGTCACGTTGTGCTGCA 538
***** ******************************************************
consensus_8212#0 CCAGGAACCCCAAGAACGCCAGCATCGCCGGATCTCCACGTAGTGGAACAGGATGAACTC 507
consensus_8212#1 CCAGGAACCCCAAGAACGCCAGCATCGCCAG--CCTCCCGTTGGCGAGCTCCTTC----- 591
***************************** * * * *** * ** * *
consensus_8212#0 GATGACGAACAGCGTCGACGACGACGCGAAGTAGGTGGCCTTGCCGGCGTCGTACCACTG 567
consensus_8212#1 ------------------------------------------------------------
consensus_8212#0 GGCGCGTCGATCAACCCGATCTTCGTCAGCACCTCAGGCAGCAGCATCCCGGCCACCCCC 627
consensus_8212#1 ------------------------------------------------------------
consensus_8212#0 AGCATCGCCCACCGCCCGTTCACCAGCTCCGCCTGCACGAACCACCGCAGGTTCTCCGGG 687
consensus_8212#1 ------------------------------------------------------------
consensus_8212#0 TCCTCCGCCAGACCCAACGGGTCGAACCCGTTATCGCCTGGCAAGCTGCCGTTGAGGTAG 747
consensus_8212#1 ------------------------------------------------------------
consensus_8212#0 GTGGGAGAAGGGAGGCCGGGGAGCCACTCTCCCTTGGCCTCCGCCCGAACATTGCCCTAG 807
consensus_8212#1 ------------------------------------------------------------
consensus_8212#0 GAAGGTAGACTTGAGCGACGCCGACGAGCGGAGGGCTGCGACCGGGGTGCGGGCGGTGAC 867
consensus_8212#1 ------------------------------------------------------------
consensus_8212#0 GGACGCCATGGCTTAGCTTCCCCGGCTTAGAGAGGGGAGGAAGCGAAGCGGGTGTAGTCA 927
consensus_8212#1 ------------------------------------------------------------
consensus_8212#0 CAAGGGTAC 936
consensus_8212#1 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||