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Oryza sativa
cluster # 8213 cluster # 8213       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8213#0 length = 1261 sequences # 4  
consensus_8213#1 length = 616 sequences # 1  

consensusID : consensus_8213#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1261
fasta sequence
                              [AATTAAGGTTCCGATTCCCGGAGAAGGGACCCTGAGAAACGGCTACCACAATCCAAAGGAAGGCAGCAAGGCGCCCAATGTACCCAAATCCGGACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCGCTTTAGTGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTGTAGATCATCGTCGCGCCGCGCCCGCCGCTCCTCCTCACGACGAGCACACGACCTGCTCGACCCTTCTGCCGGCGATGCGCTCCTGTCCTTAACTGGCCGGTTCGTGCCTCCGGCGCCGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGGATAACATCATAGGATTCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTGATGATTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCAT-TGCCAACCAATTACTACTACTCTCTGCCTCATCCTCATCCCCATCCCCATCCCGACTACCTCATCCCCATCTACTCCGACTCCGAGAGAGAGAGACCGCGAGAGGCGGCAGC-GTGGC-GGGGTGGC-GGCGTCGGATTGGCGATGACGGCTGTTGATTCGGTGAC-GGAGTGAC-GGC-GGC-GGTGGTTGATCC-GGTGACGGAGTGGTGGCTATGTGCGACCGCGCGCGCGGGCAAATCCGGTAGCGGTCCTAAGTGGATCTCCGGCGGCGTCGGCGATGGTCGACGGTGGATCCAGCGTCGGGGACGGTGGTCTCGAGCAGATCCGGCAGCCGTGTGAGCGAGCGGATCTGGCGGGAGTCGTGGGCAGATCTCCGACGGCGGTCACGGCCTCGCGGGTGGATCTCCAGCGACGGAGACGACAGTGGCGGGCGGCTCTCCGGCGACGGCCATGCAGGTGCTCCCCGTCCTCTTTCACTCTCCCATGGTGGGCTCGTTGCTGCTTCTCCTCTCCCATGGCGGTAACCAACTACTTTGGAGAGAGACAAAGCTAGAGCAAATAAGATCGGATTGTTTATTCCTTATGGGTGGTTCTTATGGGTGGTTCTTATGCATAATGCTACCTCAAGAAAAGGATAGCTATAAGAACCACCTCCACAATATATAAGTAGAC]

[-] EMBL BU673765             [AATTAAGGTTCCGATTCCCGGAGAAGGGACCCTGAGAAACGGCTACCACAATCCAAAGGAAGGCAGCAAGGCGCCCAATGTACCCAAATCCGGACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCGCTTTAGTGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL BU672953             [                                                                                                                                 GCGCTTTAGTTTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGTCAAGTCTGGTGCCAGCATCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAGTCAGAAAGCTCGTTG GTAGATCATCGTCGCGCCGCGCCCGCCGCTCCTCCTCACGACGAGCACACGACCTGCTCGACCCTTCTGCCGGCGATGCGCTCCTGTCCTTAACTGGCCGGTTCGTGCCTCCGGCGCCGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGGATAACATCATAGGATTCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTGATGATTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCAT TGCCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AK107702             [                                                                                                                                                                                                                                                                                                                                                                                                                                 CAAAGCAAGCCATCGCTCTGGATACATTAGCATGGGATAACATCATAGGATTCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATATG TTCCCAATTACTACTACTCTCTGCCTCATCCTCATCCCCATCCCCATCCCGACTACCTCATCCCCATCTACTCCGACTCCGAGAGAGAGAGACCGCGAGAGGCGGCAGC GTGGC GGGGTGGC GGCGTCGGATTGGCGATGACGGCTGTTGATTCGGTGAC GGAGTGAC GGC GGC GGTGGTTGATCC GGTGACGGAGTGGTGGCTATGTGCGACCGCGCGCGCGGGCAAATCCGGTAGCGGTCCTAAGTGGATCTCCGGCGGCGTCGGCGATGGTCGACGGTGGATCCAGCGTCGGGGACGGTGGTCTCGAGCAGATCCGGCAGCCGTGTGAGCGAGCGGATCTGGCGGGAGTCGTGGGCAGATCTCCGACGGCGGTCACGGCCTCGCGGGTGGATCTCCAGCGACGGAGACGACAGTGGCGGGCGGCTCTCCGGCGACGGCCATGCAGGTGCTCCCCGTCCTCTTTCACTCTCCCATGGTGGGCTCGTTGCTGCTTCTCCTCTCCCATGGCGGTAACCAACTACTTTGGAGAGAGACAAAGCTAGAGCAAATAAGATCGGATTGTTTATTCCTTATGGGTGGTTCTTATGGGTGGTTCTTATGCATAATGCTACCTCAAGAAAAGGATAGCTATAAGAACCACCTCCACAATATATAAGTAGAC]
[+] EMBL AU223438             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TCCGACTCCGAGAGAGAGAGACCGCGAGAGGCGGCAGCAGTGGCAGGGGTGGCAGGCGTCGGATTGGCGATGACGGCTGTTGATTCGGTGACAGGAGTGACAGGCAGGCAGGTGGTTGATCCAGGTGACGGAGTGGTGGCTATGTGCGACCGCGCGCGCGGGCAAATCCGGTAGCGGTCCTAAGTGGATCTCCGGCGGCGTCGGCGATGGTCGACGGTGGATCCAGCGTCGGGGACGGTGGTCTCGAGCAGATCCGGCAGCCGTGTGAGCGAGCGGATCTGGCGGGAGTCGTGGGCAGATCTCCGACGGCGGTCACGGCCTCGCGGGTGGATCTCCAGCGACGGAGACGACAGTGGCGGGCGGCTCTCCGGCGACGGCCATGCAGGTGCTCCCCGTCCTCTTTCACTCTCCCATGGTGGGCTCGTT                                                                                                                                                                               ]


>consensus_8213#0 AATTAAGGTTCCGATTCCCGGAGAAGGGACCCTGAGAAACGGCTACCACAATCCAAAGGA AGGCAGCAAGGCGCCCAATGTACCCAAATCCGGACACGGGGAGGTAGTGACAATAAATAA CAATACCGGGCGCTTTAGTGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGA GGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGT ATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTGTAGATCATCGTCGCGCCGCGCCCGC CGCTCCTCCTCACGACGAGCACACGACCTGCTCGACCCTTCTGCCGGCGATGCGCTCCTG TCCTTAACTGGCCGGTTCGTGCCTCCGGCGCCGTTACTTTGAAGAAATTAGAGTGCTCAA AGCAAGCCATCGCTCTGGATACATTAGCATGGGATAACATCATAGGATTCCGGTCCTATT GTGTTGGCCTTCGGGATCGGAGTGATGATTAATAGGGACAGTCGGGGGCATTCGTATTTC ATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTGCCAA CCAATTACTACTACTCTCTGCCTCATCCTCATCCCCATCCCCATCCCGACTACCTCATCC CCATCTACTCCGACTCCGAGAGAGAGAGACCGCGAGAGGCGGCAGCGTGGCGGGGTGGCG GCGTCGGATTGGCGATGACGGCTGTTGATTCGGTGACGGAGTGACGGCGGCGGTGGTTGA TCCGGTGACGGAGTGGTGGCTATGTGCGACCGCGCGCGCGGGCAAATCCGGTAGCGGTCC TAAGTGGATCTCCGGCGGCGTCGGCGATGGTCGACGGTGGATCCAGCGTCGGGGACGGTG GTCTCGAGCAGATCCGGCAGCCGTGTGAGCGAGCGGATCTGGCGGGAGTCGTGGGCAGAT CTCCGACGGCGGTCACGGCCTCGCGGGTGGATCTCCAGCGACGGAGACGACAGTGGCGGG CGGCTCTCCGGCGACGGCCATGCAGGTGCTCCCCGTCCTCTTTCACTCTCCCATGGTGGG CTCGTTGCTGCTTCTCCTCTCCCATGGCGGTAACCAACTACTTTGGAGAGAGACAAAGCT AGAGCAAATAAGATCGGATTGTTTATTCCTTATGGGTGGTTCTTATGGGTGGTTCTTATG CATAATGCTACCTCAAGAAAAGGATAGCTATAAGAACCACCTCCACAATATATAAGTAGA C



consensusID : consensus_8213#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 616
fasta sequence
                              [TGGATACCACCATTTTACATGGACATCTTCACAGTGTATATTAAAAAAGTGGGCATTAAGGTGGACTCCATGTTCCCAATTACTACTACTCTCTGCCTCATCCTCATCCCCATCCCCATCCCGACTACCTCATCCCCATCTACTCCGACTCCGAGAGAGAGAGACCGCGAGAGGCGGCAGCGTGGCGGGGTGGCGGCGTCGGATTGGCGATGACGGCTGTTGATTCGGTGACGGAGTGACGGCGGCGGTGGTTGATCCGGTGACGGAGTGGTGGCTATGCGCGACCGCGCGCGCGGGCAAATCCGGTAGCGGTCCTAAGTGGATCTCCGGCGGCGTCGGCGATGGTCGACGGTGGATCCAGCGTCGGGGACGGTGGTCTCGAGCAGATCCGGCAGCCGTGTGAGCGAGCGGATCTGGCGGGAGTCGTGGGCAGATCTCCGACGGCGGTCACGGCCTCGCGGGTGGATCTCCAGCGACGGAGACGACAGTGGCGGGCGGCTCTCCGGCGACGGCCATGCAGGTGCTCCCCGTCCTCTTTCACTCTCCCATGGTGGGCTCGTTGCTGCTTCTCCTCTCCCATGGCGGTAACCAACTACTTTGGAGAGAGACAAAGCTA]

[-] EMBL AK121073             [TGGATACCACCATTTTACATGGACATCTTCACAGTGTATATTAAAAAAGTGGGCATTAAGGTGGACTCCATGTTCCCAATTACTACTACTCTCTGCCTCATCCTCATCCCCATCCCCATCCCGACTACCTCATCCCCATCTACTCCGACTCCGAGAGAGAGAGACCGCGAGAGGCGGCAGCGTGGCGGGGTGGCGGCGTCGGATTGGCGATGACGGCTGTTGATTCGGTGACGGAGTGACGGCGGCGGTGGTTGATCCGGTGACGGAGTGGTGGCTATGCGCGACCGCGCGCGCGGGCAAATCCGGTAGCGGTCCTAAGTGGATCTCCGGCGGCGTCGGCGATGGTCGACGGTGGATCCAGCGTCGGGGACGGTGGTCTCGAGCAGATCCGGCAGCCGTGTGAGCGAGCGGATCTGGCGGGAGTCGTGGGCAGATCTCCGACGGCGGTCACGGCCTCGCGGGTGGATCTCCAGCGACGGAGACGACAGTGGCGGGCGGCTCTCCGGCGACGGCCATGCAGGTGCTCCCCGTCCTCTTTCACTCTCCCATGGTGGGCTCGTTGCTGCTTCTCCTCTCCCATGGCGGTAACCAACTACTTTGGAGAGAGACAAAGCTA]


>consensus_8213#1 TGGATACCACCATTTTACATGGACATCTTCACAGTGTATATTAAAAAAGTGGGCATTAAG GTGGACTCCATGTTCCCAATTACTACTACTCTCTGCCTCATCCTCATCCCCATCCCCATC CCGACTACCTCATCCCCATCTACTCCGACTCCGAGAGAGAGAGACCGCGAGAGGCGGCAG CGTGGCGGGGTGGCGGCGTCGGATTGGCGATGACGGCTGTTGATTCGGTGACGGAGTGAC GGCGGCGGTGGTTGATCCGGTGACGGAGTGGTGGCTATGCGCGACCGCGCGCGCGGGCAA ATCCGGTAGCGGTCCTAAGTGGATCTCCGGCGGCGTCGGCGATGGTCGACGGTGGATCCA GCGTCGGGGACGGTGGTCTCGAGCAGATCCGGCAGCCGTGTGAGCGAGCGGATCTGGCGG GAGTCGTGGGCAGATCTCCGACGGCGGTCACGGCCTCGCGGGTGGATCTCCAGCGACGGA GACGACAGTGGCGGGCGGCTCTCCGGCGACGGCCATGCAGGTGCTCCCCGTCCTCTTTCA CTCTCCCATGGTGGGCTCGTTGCTGCTTCTCCTCTCCCATGGCGGTAACCAACTACTTTG GAGAGAGACAAAGCTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8213#0      AATTAAGGTTCCGATTCCCGGAGAAGGGACCCTGAGAAACGGCTACCACAATCCAAAGGA 60
consensus_8213#1      ------------------------------------------------------------
                                                                                  

consensus_8213#0      AGGCAGCAAGGCGCCCAATGTACCCAAATCCGGACACGGGGAGGTAGTGACAATAAATAA 120
consensus_8213#1      ------------------------------------------------------------
                                                                                  

consensus_8213#0      CAATACCGGGCGCTTTAGTGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGA 180
consensus_8213#1      ------------------------------------------------------------
                                                                                  

consensus_8213#0      GGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGT 240
consensus_8213#1      ------------------------------------------------------------
                                                                                  

consensus_8213#0      ATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTGTAGATCATCGTCGCGCCGCGCCCGC 300
consensus_8213#1      ------------------------------------------------------------
                                                                                  

consensus_8213#0      CGCTCCTCCTCACGACGAGCACACGACCTGCTCGACCCTTCTGCCGGCGATGCGCTCCTG 360
consensus_8213#1      ------------------------------------------------------------
                                                                                  

consensus_8213#0      TCCTTAACTGGCCGGTTCGTGCCTCCGGCGCCGTTACTTTGAAGAAATTAGAGTGCTCAA 420
consensus_8213#1      ------------------------------------------------------------
                                                                                  

consensus_8213#0      AGCAAGCCATCGCTCTGGATACATTAGCATGGGATAACATCATAGGATTCCGGTCCTATT 480
consensus_8213#1      ------------------------------------------------------------
                                                                                  

consensus_8213#0      GTGTTGGCCTTCGGGATCGGAGTGATGATTAATAGGGACAGTCGGGGGCATTCGTATTTC 540
consensus_8213#1      ------------------------------------------TGGATACCACCATTTTAC 18
                                                                 **   *   * * ** *

consensus_8213#0      ATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTGCCAA 600
consensus_8213#1      ATGGACATCTTCACAGTG--TATATTAAAAAAGTGGGCATTAAGGTGGACTCCATGTTC- 75
                      ** * **       * *   *  *** *  **    * *  *  * * *  *  **    

consensus_8213#0      CCAATTACTACTACTCTCTGCCTCATCCTCATCCCCATCCCCATCCCGACTACCTCATCC 660
consensus_8213#1      CCAATTACTACTACTCTCTGCCTCATCCTCATCCCCATCCCCATCCCGACTACCTCATCC 135
                      ************************************************************

consensus_8213#0      CCATCTACTCCGACTCCGAGAGAGAGAGACCGCGAGAGGCGGCAGCGTGGCGGGGTGGCG 720
consensus_8213#1      CCATCTACTCCGACTCCGAGAGAGAGAGACCGCGAGAGGCGGCAGCGTGGCGGGGTGGCG 195
                      ************************************************************

consensus_8213#0      GCGTCGGATTGGCGATGACGGCTGTTGATTCGGTGACGGAGTGACGGCGGCGGTGGTTGA 780
consensus_8213#1      GCGTCGGATTGGCGATGACGGCTGTTGATTCGGTGACGGAGTGACGGCGGCGGTGGTTGA 255
                      ************************************************************

consensus_8213#0      TCCGGTGACGGAGTGGTGGCTATGTGCGACCGCGCGCGCGGGCAAATCCGGTAGCGGTCC 840
consensus_8213#1      TCCGGTGACGGAGTGGTGGCTATGCGCGACCGCGCGCGCGGGCAAATCCGGTAGCGGTCC 315
                      ************************ ***********************************

consensus_8213#0      TAAGTGGATCTCCGGCGGCGTCGGCGATGGTCGACGGTGGATCCAGCGTCGGGGACGGTG 900
consensus_8213#1      TAAGTGGATCTCCGGCGGCGTCGGCGATGGTCGACGGTGGATCCAGCGTCGGGGACGGTG 375
                      ************************************************************

consensus_8213#0      GTCTCGAGCAGATCCGGCAGCCGTGTGAGCGAGCGGATCTGGCGGGAGTCGTGGGCAGAT 960
consensus_8213#1      GTCTCGAGCAGATCCGGCAGCCGTGTGAGCGAGCGGATCTGGCGGGAGTCGTGGGCAGAT 435
                      ************************************************************

consensus_8213#0      CTCCGACGGCGGTCACGGCCTCGCGGGTGGATCTCCAGCGACGGAGACGACAGTGGCGGG 1020
consensus_8213#1      CTCCGACGGCGGTCACGGCCTCGCGGGTGGATCTCCAGCGACGGAGACGACAGTGGCGGG 495
                      ************************************************************

consensus_8213#0      CGGCTCTCCGGCGACGGCCATGCAGGTGCTCCCCGTCCTCTTTCACTCTCCCATGGTGGG 1080
consensus_8213#1      CGGCTCTCCGGCGACGGCCATGCAGGTGCTCCCCGTCCTCTTTCACTCTCCCATGGTGGG 555
                      ************************************************************

consensus_8213#0      CTCGTTGCTGCTTCTCCTCTCCCATGGCGGTAACCAACTACTTTGGAGAGAGACAAAGCT 1140
consensus_8213#1      CTCGTTGCTGCTTCTCCTCTCCCATGGCGGTAACCAACTACTTTGGAGAGAGACAAAGCT 615
                      ************************************************************

consensus_8213#0      AGAGCAAATAAGATCGGATTGTTTATTCCTTATGGGTGGTTCTTATGGGTGGTTCTTATG 1200
consensus_8213#1      A----------------------------------------------------------- 616
                      *                                                           

consensus_8213#0      CATAATGCTACCTCAAGAAAAGGATAGCTATAAGAACCACCTCCACAATATATAAGTAGA 1260
consensus_8213#1      ------------------------------------------------------------
                                                                                  

consensus_8213#0      C 1261
consensus_8213#1      -
                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)