These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8213#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1261 fasta sequence [AATTAAGGTTCCGATTCCCGGAGAAGGGACCCTGAGAAACGGCTACCACAATCCAAAGGAAGGCAGCAAGGCGCCCAATGTACCCAAATCCGGACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCGCTTTAGTGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTGTAGATCATCGTCGCGCCGCGCCCGCCGCTCCTCCTCACGACGAGCACACGACCTGCTCGACCCTTCTGCCGGCGATGCGCTCCTGTCCTTAACTGGCCGGTTCGTGCCTCCGGCGCCGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGGATAACATCATAGGATTCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTGATGATTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCAT-TGCCAACCAATTACTACTACTCTCTGCCTCATCCTCATCCCCATCCCCATCCCGACTACCTCATCCCCATCTACTCCGACTCCGAGAGAGAGAGACCGCGAGAGGCGGCAGC-GTGGC-GGGGTGGC-GGCGTCGGATTGGCGATGACGGCTGTTGATTCGGTGAC-GGAGTGAC-GGC-GGC-GGTGGTTGATCC-GGTGACGGAGTGGTGGCTATGTGCGACCGCGCGCGCGGGCAAATCCGGTAGCGGTCCTAAGTGGATCTCCGGCGGCGTCGGCGATGGTCGACGGTGGATCCAGCGTCGGGGACGGTGGTCTCGAGCAGATCCGGCAGCCGTGTGAGCGAGCGGATCTGGCGGGAGTCGTGGGCAGATCTCCGACGGCGGTCACGGCCTCGCGGGTGGATCTCCAGCGACGGAGACGACAGTGGCGGGCGGCTCTCCGGCGACGGCCATGCAGGTGCTCCCCGTCCTCTTTCACTCTCCCATGGTGGGCTCGTTGCTGCTTCTCCTCTCCCATGGCGGTAACCAACTACTTTGGAGAGAGACAAAGCTAGAGCAAATAAGATCGGATTGTTTATTCCTTATGGGTGGTTCTTATGGGTGGTTCTTATGCATAATGCTACCTCAAGAAAAGGATAGCTATAAGAACCACCTCCACAATATATAAGTAGAC] [-] EMBL BU673765 [AATTAAGGTTCCGATTCCCGGAGAAGGGACCCTGAGAAACGGCTACCACAATCCAAAGGAAGGCAGCAAGGCGCCCAATGTACCCAAATCCGGACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCGCTTTAGTGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTGT ] [-] EMBL BU672953 [ GCGCTTTAGTTTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGTCAAGTCTGGTGCCAGCATCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAGTCAGAAAGCTCGTTG GTAGATCATCGTCGCGCCGCGCCCGCCGCTCCTCCTCACGACGAGCACACGACCTGCTCGACCCTTCTGCCGGCGATGCGCTCCTGTCCTTAACTGGCCGGTTCGTGCCTCCGGCGCCGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGGATAACATCATAGGATTCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTGATGATTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCAT TGCCAA ] [+] EMBL AK107702 [ CAAAGCAAGCCATCGCTCTGGATACATTAGCATGGGATAACATCATAGGATTCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATATG TTCCCAATTACTACTACTCTCTGCCTCATCCTCATCCCCATCCCCATCCCGACTACCTCATCCCCATCTACTCCGACTCCGAGAGAGAGAGACCGCGAGAGGCGGCAGC GTGGC GGGGTGGC GGCGTCGGATTGGCGATGACGGCTGTTGATTCGGTGAC GGAGTGAC GGC GGC GGTGGTTGATCC GGTGACGGAGTGGTGGCTATGTGCGACCGCGCGCGCGGGCAAATCCGGTAGCGGTCCTAAGTGGATCTCCGGCGGCGTCGGCGATGGTCGACGGTGGATCCAGCGTCGGGGACGGTGGTCTCGAGCAGATCCGGCAGCCGTGTGAGCGAGCGGATCTGGCGGGAGTCGTGGGCAGATCTCCGACGGCGGTCACGGCCTCGCGGGTGGATCTCCAGCGACGGAGACGACAGTGGCGGGCGGCTCTCCGGCGACGGCCATGCAGGTGCTCCCCGTCCTCTTTCACTCTCCCATGGTGGGCTCGTTGCTGCTTCTCCTCTCCCATGGCGGTAACCAACTACTTTGGAGAGAGACAAAGCTAGAGCAAATAAGATCGGATTGTTTATTCCTTATGGGTGGTTCTTATGGGTGGTTCTTATGCATAATGCTACCTCAAGAAAAGGATAGCTATAAGAACCACCTCCACAATATATAAGTAGAC] [+] EMBL AU223438 [ TCCGACTCCGAGAGAGAGAGACCGCGAGAGGCGGCAGCAGTGGCAGGGGTGGCAGGCGTCGGATTGGCGATGACGGCTGTTGATTCGGTGACAGGAGTGACAGGCAGGCAGGTGGTTGATCCAGGTGACGGAGTGGTGGCTATGTGCGACCGCGCGCGCGGGCAAATCCGGTAGCGGTCCTAAGTGGATCTCCGGCGGCGTCGGCGATGGTCGACGGTGGATCCAGCGTCGGGGACGGTGGTCTCGAGCAGATCCGGCAGCCGTGTGAGCGAGCGGATCTGGCGGGAGTCGTGGGCAGATCTCCGACGGCGGTCACGGCCTCGCGGGTGGATCTCCAGCGACGGAGACGACAGTGGCGGGCGGCTCTCCGGCGACGGCCATGCAGGTGCTCCCCGTCCTCTTTCACTCTCCCATGGTGGGCTCGTT ] consensusID : consensus_8213#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence [TGGATACCACCATTTTACATGGACATCTTCACAGTGTATATTAAAAAAGTGGGCATTAAGGTGGACTCCATGTTCCCAATTACTACTACTCTCTGCCTCATCCTCATCCCCATCCCCATCCCGACTACCTCATCCCCATCTACTCCGACTCCGAGAGAGAGAGACCGCGAGAGGCGGCAGCGTGGCGGGGTGGCGGCGTCGGATTGGCGATGACGGCTGTTGATTCGGTGACGGAGTGACGGCGGCGGTGGTTGATCCGGTGACGGAGTGGTGGCTATGCGCGACCGCGCGCGCGGGCAAATCCGGTAGCGGTCCTAAGTGGATCTCCGGCGGCGTCGGCGATGGTCGACGGTGGATCCAGCGTCGGGGACGGTGGTCTCGAGCAGATCCGGCAGCCGTGTGAGCGAGCGGATCTGGCGGGAGTCGTGGGCAGATCTCCGACGGCGGTCACGGCCTCGCGGGTGGATCTCCAGCGACGGAGACGACAGTGGCGGGCGGCTCTCCGGCGACGGCCATGCAGGTGCTCCCCGTCCTCTTTCACTCTCCCATGGTGGGCTCGTTGCTGCTTCTCCTCTCCCATGGCGGTAACCAACTACTTTGGAGAGAGACAAAGCTA] [-] EMBL AK121073 [TGGATACCACCATTTTACATGGACATCTTCACAGTGTATATTAAAAAAGTGGGCATTAAGGTGGACTCCATGTTCCCAATTACTACTACTCTCTGCCTCATCCTCATCCCCATCCCCATCCCGACTACCTCATCCCCATCTACTCCGACTCCGAGAGAGAGAGACCGCGAGAGGCGGCAGCGTGGCGGGGTGGCGGCGTCGGATTGGCGATGACGGCTGTTGATTCGGTGACGGAGTGACGGCGGCGGTGGTTGATCCGGTGACGGAGTGGTGGCTATGCGCGACCGCGCGCGCGGGCAAATCCGGTAGCGGTCCTAAGTGGATCTCCGGCGGCGTCGGCGATGGTCGACGGTGGATCCAGCGTCGGGGACGGTGGTCTCGAGCAGATCCGGCAGCCGTGTGAGCGAGCGGATCTGGCGGGAGTCGTGGGCAGATCTCCGACGGCGGTCACGGCCTCGCGGGTGGATCTCCAGCGACGGAGACGACAGTGGCGGGCGGCTCTCCGGCGACGGCCATGCAGGTGCTCCCCGTCCTCTTTCACTCTCCCATGGTGGGCTCGTTGCTGCTTCTCCTCTCCCATGGCGGTAACCAACTACTTTGGAGAGAGACAAAGCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8213#0 AATTAAGGTTCCGATTCCCGGAGAAGGGACCCTGAGAAACGGCTACCACAATCCAAAGGA 60 consensus_8213#1 ------------------------------------------------------------ consensus_8213#0 AGGCAGCAAGGCGCCCAATGTACCCAAATCCGGACACGGGGAGGTAGTGACAATAAATAA 120 consensus_8213#1 ------------------------------------------------------------ consensus_8213#0 CAATACCGGGCGCTTTAGTGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGA 180 consensus_8213#1 ------------------------------------------------------------ consensus_8213#0 GGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGT 240 consensus_8213#1 ------------------------------------------------------------ consensus_8213#0 ATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTGTAGATCATCGTCGCGCCGCGCCCGC 300 consensus_8213#1 ------------------------------------------------------------ consensus_8213#0 CGCTCCTCCTCACGACGAGCACACGACCTGCTCGACCCTTCTGCCGGCGATGCGCTCCTG 360 consensus_8213#1 ------------------------------------------------------------ consensus_8213#0 TCCTTAACTGGCCGGTTCGTGCCTCCGGCGCCGTTACTTTGAAGAAATTAGAGTGCTCAA 420 consensus_8213#1 ------------------------------------------------------------ consensus_8213#0 AGCAAGCCATCGCTCTGGATACATTAGCATGGGATAACATCATAGGATTCCGGTCCTATT 480 consensus_8213#1 ------------------------------------------------------------ consensus_8213#0 GTGTTGGCCTTCGGGATCGGAGTGATGATTAATAGGGACAGTCGGGGGCATTCGTATTTC 540 consensus_8213#1 ------------------------------------------TGGATACCACCATTTTAC 18 ** * * * ** * consensus_8213#0 ATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTGCCAA 600 consensus_8213#1 ATGGACATCTTCACAGTG--TATATTAAAAAAGTGGGCATTAAGGTGGACTCCATGTTC- 75 ** * ** * * * *** * ** * * * * * * * ** consensus_8213#0 CCAATTACTACTACTCTCTGCCTCATCCTCATCCCCATCCCCATCCCGACTACCTCATCC 660 consensus_8213#1 CCAATTACTACTACTCTCTGCCTCATCCTCATCCCCATCCCCATCCCGACTACCTCATCC 135 ************************************************************ consensus_8213#0 CCATCTACTCCGACTCCGAGAGAGAGAGACCGCGAGAGGCGGCAGCGTGGCGGGGTGGCG 720 consensus_8213#1 CCATCTACTCCGACTCCGAGAGAGAGAGACCGCGAGAGGCGGCAGCGTGGCGGGGTGGCG 195 ************************************************************ consensus_8213#0 GCGTCGGATTGGCGATGACGGCTGTTGATTCGGTGACGGAGTGACGGCGGCGGTGGTTGA 780 consensus_8213#1 GCGTCGGATTGGCGATGACGGCTGTTGATTCGGTGACGGAGTGACGGCGGCGGTGGTTGA 255 ************************************************************ consensus_8213#0 TCCGGTGACGGAGTGGTGGCTATGTGCGACCGCGCGCGCGGGCAAATCCGGTAGCGGTCC 840 consensus_8213#1 TCCGGTGACGGAGTGGTGGCTATGCGCGACCGCGCGCGCGGGCAAATCCGGTAGCGGTCC 315 ************************ *********************************** consensus_8213#0 TAAGTGGATCTCCGGCGGCGTCGGCGATGGTCGACGGTGGATCCAGCGTCGGGGACGGTG 900 consensus_8213#1 TAAGTGGATCTCCGGCGGCGTCGGCGATGGTCGACGGTGGATCCAGCGTCGGGGACGGTG 375 ************************************************************ consensus_8213#0 GTCTCGAGCAGATCCGGCAGCCGTGTGAGCGAGCGGATCTGGCGGGAGTCGTGGGCAGAT 960 consensus_8213#1 GTCTCGAGCAGATCCGGCAGCCGTGTGAGCGAGCGGATCTGGCGGGAGTCGTGGGCAGAT 435 ************************************************************ consensus_8213#0 CTCCGACGGCGGTCACGGCCTCGCGGGTGGATCTCCAGCGACGGAGACGACAGTGGCGGG 1020 consensus_8213#1 CTCCGACGGCGGTCACGGCCTCGCGGGTGGATCTCCAGCGACGGAGACGACAGTGGCGGG 495 ************************************************************ consensus_8213#0 CGGCTCTCCGGCGACGGCCATGCAGGTGCTCCCCGTCCTCTTTCACTCTCCCATGGTGGG 1080 consensus_8213#1 CGGCTCTCCGGCGACGGCCATGCAGGTGCTCCCCGTCCTCTTTCACTCTCCCATGGTGGG 555 ************************************************************ consensus_8213#0 CTCGTTGCTGCTTCTCCTCTCCCATGGCGGTAACCAACTACTTTGGAGAGAGACAAAGCT 1140 consensus_8213#1 CTCGTTGCTGCTTCTCCTCTCCCATGGCGGTAACCAACTACTTTGGAGAGAGACAAAGCT 615 ************************************************************ consensus_8213#0 AGAGCAAATAAGATCGGATTGTTTATTCCTTATGGGTGGTTCTTATGGGTGGTTCTTATG 1200 consensus_8213#1 A----------------------------------------------------------- 616 * consensus_8213#0 CATAATGCTACCTCAAGAAAAGGATAGCTATAAGAACCACCTCCACAATATATAAGTAGA 1260 consensus_8213#1 ------------------------------------------------------------ consensus_8213#0 C 1261 consensus_8213#1 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||