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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8213#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1261 fasta sequence
[AATTAAGGTTCCGATTCCCGGAGAAGGGACCCTGAGAAACGGCTACCACAATCCAAAGGAAGGCAGCAAGGCGCCCAATGTACCCAAATCCGGACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCGCTTTAGTGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTGTAGATCATCGTCGCGCCGCGCCCGCCGCTCCTCCTCACGACGAGCACACGACCTGCTCGACCCTTCTGCCGGCGATGCGCTCCTGTCCTTAACTGGCCGGTTCGTGCCTCCGGCGCCGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGGATAACATCATAGGATTCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTGATGATTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCAT-TGCCAACCAATTACTACTACTCTCTGCCTCATCCTCATCCCCATCCCCATCCCGACTACCTCATCCCCATCTACTCCGACTCCGAGAGAGAGAGACCGCGAGAGGCGGCAGC-GTGGC-GGGGTGGC-GGCGTCGGATTGGCGATGACGGCTGTTGATTCGGTGAC-GGAGTGAC-GGC-GGC-GGTGGTTGATCC-GGTGACGGAGTGGTGGCTATGTGCGACCGCGCGCGCGGGCAAATCCGGTAGCGGTCCTAAGTGGATCTCCGGCGGCGTCGGCGATGGTCGACGGTGGATCCAGCGTCGGGGACGGTGGTCTCGAGCAGATCCGGCAGCCGTGTGAGCGAGCGGATCTGGCGGGAGTCGTGGGCAGATCTCCGACGGCGGTCACGGCCTCGCGGGTGGATCTCCAGCGACGGAGACGACAGTGGCGGGCGGCTCTCCGGCGACGGCCATGCAGGTGCTCCCCGTCCTCTTTCACTCTCCCATGGTGGGCTCGTTGCTGCTTCTCCTCTCCCATGGCGGTAACCAACTACTTTGGAGAGAGACAAAGCTAGAGCAAATAAGATCGGATTGTTTATTCCTTATGGGTGGTTCTTATGGGTGGTTCTTATGCATAATGCTACCTCAAGAAAAGGATAGCTATAAGAACCACCTCCACAATATATAAGTAGAC]
[-] EMBL BU673765 [AATTAAGGTTCCGATTCCCGGAGAAGGGACCCTGAGAAACGGCTACCACAATCCAAAGGAAGGCAGCAAGGCGCCCAATGTACCCAAATCCGGACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCGCTTTAGTGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTGT ]
[-] EMBL BU672953 [ GCGCTTTAGTTTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGTCAAGTCTGGTGCCAGCATCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAGTCAGAAAGCTCGTTG GTAGATCATCGTCGCGCCGCGCCCGCCGCTCCTCCTCACGACGAGCACACGACCTGCTCGACCCTTCTGCCGGCGATGCGCTCCTGTCCTTAACTGGCCGGTTCGTGCCTCCGGCGCCGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGGATAACATCATAGGATTCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTGATGATTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCAT TGCCAA ]
[+] EMBL AK107702 [ CAAAGCAAGCCATCGCTCTGGATACATTAGCATGGGATAACATCATAGGATTCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATATG TTCCCAATTACTACTACTCTCTGCCTCATCCTCATCCCCATCCCCATCCCGACTACCTCATCCCCATCTACTCCGACTCCGAGAGAGAGAGACCGCGAGAGGCGGCAGC GTGGC GGGGTGGC GGCGTCGGATTGGCGATGACGGCTGTTGATTCGGTGAC GGAGTGAC GGC GGC GGTGGTTGATCC GGTGACGGAGTGGTGGCTATGTGCGACCGCGCGCGCGGGCAAATCCGGTAGCGGTCCTAAGTGGATCTCCGGCGGCGTCGGCGATGGTCGACGGTGGATCCAGCGTCGGGGACGGTGGTCTCGAGCAGATCCGGCAGCCGTGTGAGCGAGCGGATCTGGCGGGAGTCGTGGGCAGATCTCCGACGGCGGTCACGGCCTCGCGGGTGGATCTCCAGCGACGGAGACGACAGTGGCGGGCGGCTCTCCGGCGACGGCCATGCAGGTGCTCCCCGTCCTCTTTCACTCTCCCATGGTGGGCTCGTTGCTGCTTCTCCTCTCCCATGGCGGTAACCAACTACTTTGGAGAGAGACAAAGCTAGAGCAAATAAGATCGGATTGTTTATTCCTTATGGGTGGTTCTTATGGGTGGTTCTTATGCATAATGCTACCTCAAGAAAAGGATAGCTATAAGAACCACCTCCACAATATATAAGTAGAC]
[+] EMBL AU223438 [ TCCGACTCCGAGAGAGAGAGACCGCGAGAGGCGGCAGCAGTGGCAGGGGTGGCAGGCGTCGGATTGGCGATGACGGCTGTTGATTCGGTGACAGGAGTGACAGGCAGGCAGGTGGTTGATCCAGGTGACGGAGTGGTGGCTATGTGCGACCGCGCGCGCGGGCAAATCCGGTAGCGGTCCTAAGTGGATCTCCGGCGGCGTCGGCGATGGTCGACGGTGGATCCAGCGTCGGGGACGGTGGTCTCGAGCAGATCCGGCAGCCGTGTGAGCGAGCGGATCTGGCGGGAGTCGTGGGCAGATCTCCGACGGCGGTCACGGCCTCGCGGGTGGATCTCCAGCGACGGAGACGACAGTGGCGGGCGGCTCTCCGGCGACGGCCATGCAGGTGCTCCCCGTCCTCTTTCACTCTCCCATGGTGGGCTCGTT ]
consensusID : consensus_8213#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence
[TGGATACCACCATTTTACATGGACATCTTCACAGTGTATATTAAAAAAGTGGGCATTAAGGTGGACTCCATGTTCCCAATTACTACTACTCTCTGCCTCATCCTCATCCCCATCCCCATCCCGACTACCTCATCCCCATCTACTCCGACTCCGAGAGAGAGAGACCGCGAGAGGCGGCAGCGTGGCGGGGTGGCGGCGTCGGATTGGCGATGACGGCTGTTGATTCGGTGACGGAGTGACGGCGGCGGTGGTTGATCCGGTGACGGAGTGGTGGCTATGCGCGACCGCGCGCGCGGGCAAATCCGGTAGCGGTCCTAAGTGGATCTCCGGCGGCGTCGGCGATGGTCGACGGTGGATCCAGCGTCGGGGACGGTGGTCTCGAGCAGATCCGGCAGCCGTGTGAGCGAGCGGATCTGGCGGGAGTCGTGGGCAGATCTCCGACGGCGGTCACGGCCTCGCGGGTGGATCTCCAGCGACGGAGACGACAGTGGCGGGCGGCTCTCCGGCGACGGCCATGCAGGTGCTCCCCGTCCTCTTTCACTCTCCCATGGTGGGCTCGTTGCTGCTTCTCCTCTCCCATGGCGGTAACCAACTACTTTGGAGAGAGACAAAGCTA]
[-] EMBL AK121073 [TGGATACCACCATTTTACATGGACATCTTCACAGTGTATATTAAAAAAGTGGGCATTAAGGTGGACTCCATGTTCCCAATTACTACTACTCTCTGCCTCATCCTCATCCCCATCCCCATCCCGACTACCTCATCCCCATCTACTCCGACTCCGAGAGAGAGAGACCGCGAGAGGCGGCAGCGTGGCGGGGTGGCGGCGTCGGATTGGCGATGACGGCTGTTGATTCGGTGACGGAGTGACGGCGGCGGTGGTTGATCCGGTGACGGAGTGGTGGCTATGCGCGACCGCGCGCGCGGGCAAATCCGGTAGCGGTCCTAAGTGGATCTCCGGCGGCGTCGGCGATGGTCGACGGTGGATCCAGCGTCGGGGACGGTGGTCTCGAGCAGATCCGGCAGCCGTGTGAGCGAGCGGATCTGGCGGGAGTCGTGGGCAGATCTCCGACGGCGGTCACGGCCTCGCGGGTGGATCTCCAGCGACGGAGACGACAGTGGCGGGCGGCTCTCCGGCGACGGCCATGCAGGTGCTCCCCGTCCTCTTTCACTCTCCCATGGTGGGCTCGTTGCTGCTTCTCCTCTCCCATGGCGGTAACCAACTACTTTGGAGAGAGACAAAGCTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8213#0 AATTAAGGTTCCGATTCCCGGAGAAGGGACCCTGAGAAACGGCTACCACAATCCAAAGGA 60
consensus_8213#1 ------------------------------------------------------------
consensus_8213#0 AGGCAGCAAGGCGCCCAATGTACCCAAATCCGGACACGGGGAGGTAGTGACAATAAATAA 120
consensus_8213#1 ------------------------------------------------------------
consensus_8213#0 CAATACCGGGCGCTTTAGTGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGA 180
consensus_8213#1 ------------------------------------------------------------
consensus_8213#0 GGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGT 240
consensus_8213#1 ------------------------------------------------------------
consensus_8213#0 ATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTGTAGATCATCGTCGCGCCGCGCCCGC 300
consensus_8213#1 ------------------------------------------------------------
consensus_8213#0 CGCTCCTCCTCACGACGAGCACACGACCTGCTCGACCCTTCTGCCGGCGATGCGCTCCTG 360
consensus_8213#1 ------------------------------------------------------------
consensus_8213#0 TCCTTAACTGGCCGGTTCGTGCCTCCGGCGCCGTTACTTTGAAGAAATTAGAGTGCTCAA 420
consensus_8213#1 ------------------------------------------------------------
consensus_8213#0 AGCAAGCCATCGCTCTGGATACATTAGCATGGGATAACATCATAGGATTCCGGTCCTATT 480
consensus_8213#1 ------------------------------------------------------------
consensus_8213#0 GTGTTGGCCTTCGGGATCGGAGTGATGATTAATAGGGACAGTCGGGGGCATTCGTATTTC 540
consensus_8213#1 ------------------------------------------TGGATACCACCATTTTAC 18
** * * * ** *
consensus_8213#0 ATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTGCCAA 600
consensus_8213#1 ATGGACATCTTCACAGTG--TATATTAAAAAAGTGGGCATTAAGGTGGACTCCATGTTC- 75
** * ** * * * *** * ** * * * * * * * **
consensus_8213#0 CCAATTACTACTACTCTCTGCCTCATCCTCATCCCCATCCCCATCCCGACTACCTCATCC 660
consensus_8213#1 CCAATTACTACTACTCTCTGCCTCATCCTCATCCCCATCCCCATCCCGACTACCTCATCC 135
************************************************************
consensus_8213#0 CCATCTACTCCGACTCCGAGAGAGAGAGACCGCGAGAGGCGGCAGCGTGGCGGGGTGGCG 720
consensus_8213#1 CCATCTACTCCGACTCCGAGAGAGAGAGACCGCGAGAGGCGGCAGCGTGGCGGGGTGGCG 195
************************************************************
consensus_8213#0 GCGTCGGATTGGCGATGACGGCTGTTGATTCGGTGACGGAGTGACGGCGGCGGTGGTTGA 780
consensus_8213#1 GCGTCGGATTGGCGATGACGGCTGTTGATTCGGTGACGGAGTGACGGCGGCGGTGGTTGA 255
************************************************************
consensus_8213#0 TCCGGTGACGGAGTGGTGGCTATGTGCGACCGCGCGCGCGGGCAAATCCGGTAGCGGTCC 840
consensus_8213#1 TCCGGTGACGGAGTGGTGGCTATGCGCGACCGCGCGCGCGGGCAAATCCGGTAGCGGTCC 315
************************ ***********************************
consensus_8213#0 TAAGTGGATCTCCGGCGGCGTCGGCGATGGTCGACGGTGGATCCAGCGTCGGGGACGGTG 900
consensus_8213#1 TAAGTGGATCTCCGGCGGCGTCGGCGATGGTCGACGGTGGATCCAGCGTCGGGGACGGTG 375
************************************************************
consensus_8213#0 GTCTCGAGCAGATCCGGCAGCCGTGTGAGCGAGCGGATCTGGCGGGAGTCGTGGGCAGAT 960
consensus_8213#1 GTCTCGAGCAGATCCGGCAGCCGTGTGAGCGAGCGGATCTGGCGGGAGTCGTGGGCAGAT 435
************************************************************
consensus_8213#0 CTCCGACGGCGGTCACGGCCTCGCGGGTGGATCTCCAGCGACGGAGACGACAGTGGCGGG 1020
consensus_8213#1 CTCCGACGGCGGTCACGGCCTCGCGGGTGGATCTCCAGCGACGGAGACGACAGTGGCGGG 495
************************************************************
consensus_8213#0 CGGCTCTCCGGCGACGGCCATGCAGGTGCTCCCCGTCCTCTTTCACTCTCCCATGGTGGG 1080
consensus_8213#1 CGGCTCTCCGGCGACGGCCATGCAGGTGCTCCCCGTCCTCTTTCACTCTCCCATGGTGGG 555
************************************************************
consensus_8213#0 CTCGTTGCTGCTTCTCCTCTCCCATGGCGGTAACCAACTACTTTGGAGAGAGACAAAGCT 1140
consensus_8213#1 CTCGTTGCTGCTTCTCCTCTCCCATGGCGGTAACCAACTACTTTGGAGAGAGACAAAGCT 615
************************************************************
consensus_8213#0 AGAGCAAATAAGATCGGATTGTTTATTCCTTATGGGTGGTTCTTATGGGTGGTTCTTATG 1200
consensus_8213#1 A----------------------------------------------------------- 616
*
consensus_8213#0 CATAATGCTACCTCAAGAAAAGGATAGCTATAAGAACCACCTCCACAATATATAAGTAGA 1260
consensus_8213#1 ------------------------------------------------------------
consensus_8213#0 C 1261
consensus_8213#1 -
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||