These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8216#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 445 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGAAACCATCCATTTTTTTTATTGGCGACAAATTTATCAAATATGCCCTAAATACATATCTTGGGGGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGGAGTACTTTTACAATAAAACCGGCCGGAAAGGGGGGGAAAAAATTTTTACATTTGTGTTAAAAACAAAGGCCATTGAAATGGGACATAACCAAACTGGAAAATAAAAATATTTAGCATATTATATATTGGTATATCATCAACATAGCCCAAAACAAAGCTGCTTACTTTTATTATAGGCAGCAATCCACCAGCGCGAAGCTTGATCTTAACTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCAAAAAAACTAATCAACTGCCCCTGCCTGACG] [+] EMBL CF312994 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGAAACCATCCATTTTTTTTATTGGCGACAAATTTATCAAATATGCCCTAAATACATATCTTGGGGGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGGAGTACTTTTACAATAAAACCGGCCGGAAAGGGGGGGAAAAAATTTTTACATTTGTGTTAAAAACAAAGGCCATTGAAATGGGACATAACCAAACTGGAAAATAAAAATATTTAGCATATTATATATTGGTATATCATCAACATAGCCCAAAACAAAGCTGCTTACTTTTATTATAGGCAGCAATCCACCAGCGCGAAGCTTGATCTTAACTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCAAAAAAACTAATCAACTGC ] [+] EMBL CF300109 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGAAACCATCCATTTTTTTTATTGGCGACAAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGGAGTACTTTTACAATAAAACCGGCCGGAGAGGGGGGGGGGAAATTTTTACATTTGTGTTAAAAACAAAGGCCGTTGAAATGGTCCATAACCAAACTGGAAAATAAAAATATTTAGCATTTTATATTTTGATATATCATCAACATACCCCAAAACAAAGCTGCATACTTTTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAACTTAATTGCCACCAAACTCCTCCCAACCTGGGGGCTTGTAGGCAAAAAAACTAATCAACTGCCCCTGCCTGACG] consensusID : consensus_8216#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 422 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT--TTTTTTTTTTATCAAATATGCTCTAAATACATATCTTGGGGGTATAATACCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGGAGTACTTTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTTTTACATTTGTGTTAAAAACAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATTTAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCTTACTTTTATTATAGGCAGCAATCCCCCAGCGCGATGCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAACTGCCCCTGCCTGACGTTGTCAAACCCGATGAT] [+] EMBL CF337963 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTATCAAATATGCTCTAAATACATATCTTGGGGGTATAATACCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGGAGTACTTTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTTTTACATTTGTGTTAAAAACAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATTTAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCTTACTTTTATTATAGGCAGCAATCCCCCAGCGCGATGCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAACTGCCCCTGCCTGACGTTGTCAAACCCGATGAT] [+] EMBL CF311065 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCGACGAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTAT ATAACCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGGAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAACAAAGGCCATTGAAATGGGACATAACCAAACTGGAAAATAAAAATATATAGCATATTATATATTGGTATATCATCAACATAGCCCAAAACAAAGCTGGATACTATTATTATAGGCAGCAATCCACCAGCGCGAAGCTTGATCTTAACTTAATTGCCACCAAACTCCTTGCAAC ] consensusID : consensus_8216#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 329 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAACATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCGAAGCCGATGATACGGACAAAGGC] [+] EMBL CF333592 [TTTTTTTTTTTTTTTTTTTTTTTTTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAACATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCGAAGCCGATGATACGGACAAAGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8216#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGAAACCATCCATT 60 consensus_8216#1 -----------------TTTTTTTTTTTTTTTTTTTTTTTTTT---------------TT 28 consensus_8216#2 ------------------------------------------------------------ consensus_8216#0 TTTTTTATTGGCGACAAATTTATCAAATATGCCCTAAATACATATCTTGGGGGTATA-TA 119 consensus_8216#1 TTTTTTTTT---------TTTATCAAATATGCTCTAAATACATATCTTGGGGGTATAATA 79 consensus_8216#2 ------------------------------------------------------------ consensus_8216#0 GCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGGAGTACTTTTACAATAAA 179 consensus_8216#1 CCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGGAGTACTTTTACAATAAA 139 consensus_8216#2 ----------------------TTTTTTTTTTTTTTTTTTT----TTTTTTTACAATAAA 34 * * * ** * ************ consensus_8216#0 ACCGGCCGGAAAGGGGGGGAAAAAATTTTTACATTTGTGTTAAAAACAAAGGCCATTGAA 239 consensus_8216#1 ACCGGCCGGAAAGGGAGGGAAAAAATTTTTACATTTGTGTTAAAAACAAAGGCCATTGAA 199 consensus_8216#2 ACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAAAGGCCATTGAA 94 *************** *********** ****** ********** ************** consensus_8216#0 ATGGGACATAACCAAACTGGAAAATAAAAATATTTAGCATATTATATATTGGTATATCAT 299 consensus_8216#1 ATGGTACATAACCAAACTGTAAAATAAAAATATTTAGCATATTATATATTGATATATCAT 259 consensus_8216#2 ATGGTACATAACCAAACTGTAAAATAAAAACATATAGCATATTATATATTGATATATCAT 154 **** ************** ********** ** ***************** ******** consensus_8216#0 CAACATAGCCCAAAACAAAGCTGCTTACTTTTATTATAGGCAGCAATCCACCAGCGCGAA 359 consensus_8216#1 CAACATAGCCCAAAACAAAGCTGCTTACTTTTATTATAGGCAGCAATCCCCCAGCGCGAT 319 consensus_8216#2 CAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGAT 214 ************************ **** ******************* ********* consensus_8216#0 GCTTGATCTTAACTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCAAAAA 419 consensus_8216#1 GCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGA 379 consensus_8216#2 GCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGA 274 *********** ******************************************* * * consensus_8216#0 AACTAATCAACTGCCCCTGCCTGACG----------------------------- 445 consensus_8216#1 AACTAATCAACTGCCCCTGCCTGACGTTGTCAAACCCGATGAT------------ 422 consensus_8216#2 AGCTAATCAACTGCACCTGCCTGACGTTGTCGAAGCCGATGATACGGACAAAGGC 329 * ************ *********** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||