These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_822#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1116 fasta sequence [TCCGAACTAGCAATAGAAAATTCCAACATTTTCGCCAACATTAATTCCCATGGTATTGAAGCTTTCTTGCATCAGCCGGCGTACGCGGCTCGCCGGTGCCGGCGCCGGCCAGGGTCATCGCCGCCGACGGCTCGCTCAAGGAGCTCCATGCGGCCGCCTCTCCCGTCGATCGCCGACGTGCTCCGTGGCGAGGGCGAGTCCTTCTTCGTGTGCAACTTCGACACGCTCTACTTCAACGTGCAGCCGCCGGCGATGGCGCCGGGGGTGGTCGCTCCGGCCGGGGCAGATATACTTACGTGCTCCCGTCGGCGATGCTCGGGCAGCCGCTGTCCATCGTCGACATGGTCGCGCTGGCGGTGTTCGCGAGCCGCCGCTCGCTGCCGTCAAGGCGCCGCTCCGCCGAGGGGTTCGCCGCGCGGCGACAGGAAGATTAAGACGGTGCGCGTCACGCCGCTGCGGGACTAGGTGCTCTACGAGCAACGGAGTCCTATTTCCACGAGAAGCTCAACGAGCGGACTCTGGGTGAGTTCCCAGCGTCGTGGAGCTCGCCGAAGAGCGCAGCGAGAAGATCGCGCGGCGGCGCGGTCGCGGTTGAAGCGCGTGCTGATTATCATCCTAGAGGAAACAAGAATATTCAATTTTTTCAACTTCTTTTTTGGGGAAACAATATTTTTTCAGAAGCTCGATGCACCAATACAAGCTTAAAGCTTTAATTAATACTTGCACTGTTTCAGAATGTTTCAGAATGTTAGAACACCGTTAGACTTTTTATTACGTGTTTGACCATTCGTCTTATTAAAAAAATTTAAGTAATTATTTATTCTTTTCATATCATTTGATTCATTGTAAAATATATTTTCATGTACATATATAGTTTTACATATTTTACAAATTATTTTGAATAAGACAAACGGTCAAACATGTGCTAAAAAGTCAACGGTGTCAAACATTTTGAAACGGATGGAGTATGTTTAATTAGTAGATTTAGAAAGAAAAGAATACTGGGGAAAAAGATTCATAGATGAATCACCCTCTTATATATACGACTTCAATCTGTAGTTGCAAAACTACAAAAATGTAAAAAAAAAGTAGATCTTTATACAATTTTACCTGAAG] [+] EMBL AK067104 [TCCGAACTAGCAATAGAAAATTCCAACATTTTCGCCAACATTAATTCCCATGGTATTGAAGCTTTCTTGCATCAGCCGGCGTACGCGGCTCGCCGGTGCCGGCGCCGGCCAGGGTCATCGCCGCCGACGGCTCGCTCAAGGAGCTCCATGCGGCCGCCTCTCCCGTCGATCGCCGACGTGCTCCGTGGCGAGGGCGAGTCCTTCTTCGTGTGCAACTTCGACACGCTCTACTTCAACGTGCAGCCGCCGGCGATGGCGCCGGGGGTGGTCGCTCCGGCCGGGGCAGATATACTTACGTGCTCCCGTCGGCGATGCTCGGGCAGCCGCTGTCCATCGTCGACATGGTCGCGCTGGCGGTGTTCGCGAGCCGCCGCTCGCTGCCGTCAAGGCGCCGCTCCGCCGAGGGGTTCGCCGCGCGGCGACAGGAAGATTAAGACGGTGCGCGTCACGCCGCTGCGGGACTAGGTGCTCTACGAGCAACGGAGTCCTATTTCCACGAGAAGCTCAACGAGCGGACTCTGGGTGAGTTCCCAGCGTCGTGGAGCTCGCCGAAGAGCGCAGCGAGAAGATCGCGCGGCGGCGCGGTCGCGGTTGAAGCGCGTGCTGATTATCATCCTAGAGGAAACAAGAATATTCAATTTTTTCAACTTCTTTTTTGGGGAAACAATATTTTTTCAGAAGCTCGATGCACCAATACAAGCTTAAAGCTTTAATTAATACTTGCACTGTTTCAGAATGTTTCAGAATGTTAGAACACCGTTAGACTTTTTATTACGTGTTTGACCATTCGTCTTATTAAAAAAATTTAAGTAATTATTTATTCTTTTCATATCATTTGATTCATTGTAAAATATATTTTCATGTACATATATAGTTTTACATATTTTACAAATTATTTTGAATAAGACAAACGGTCAAACATGTGCTAAAAAGTCAACGGTGTCAAACATTTTGAAACGGATGGAGTATGTTTAATTAGTAGATTTAGAAAGAAAAGAATACTGGGGAAAAAGATTCATAGATGAATCACCCTCTTATATATACGACTTCAATCTGTAGTTGCAAAACTACAAAAATGTAAAAAAAAAGTAGATCTTTATACAATTTTACCTGAAG] consensusID : consensus_822#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 772 fasta sequence [CCTCCGAACTAGCAATAGAAAATTCCAACATTTTCGCCAACATTAATTCCCATGGGATTGAAGCTTTCTTGCATCAGCCGGCGACGCGGCTCGCCGGTGCCGGCGCCGGCCAGGGTCATCGCCGCCGACGGCTCGCTCAAGGAGCTCCATGCGGCCGCCTCTCCCGCCGTCGCCGACGTGCTCCGCGGCGAGGGCGAGTCCTTCTTCGTGTGCAACTCCGACACGCTCTACTTCAACGAGCAGCCGCCGGCGATGGCGCCGGGGGAGGCGCTCCGGCCGGGGCAGATATACTTCGTGCTCCCGGCGGCGATGCTCGGGCAGCCGCTGTCCACCGCCGACATGGCCGCGCTGGCGGTGCGCGCGAGCGCCGCGCTCGCTGCCGTCAAGGCGCCGCGCCGCCGAGGGGCTCGCCGCGGCGGCGACAGGAAGATGAAGACGGTGCGCGTCACGCCGCTGCGGGACGAGGGCCTCGACGGCGGCGACGTCCTGCTCCACGAGAAGCTCAACGAGCGGACTCTGGGTGAGTTCCCGGCGTCGTGGAGCCCGCCGAAGAGCGGCGGCGAGAAGCTCGCCGCGGCGGCGCGGTCGCGGTTGAAGCGCGTGCTGAGCATCATCCAAGAGGATGCATAAATATTCAATTTTTTCCACTTCTTTTTTGGGGAAACAATTTTTTTTCAGAAGCTCGAAGCCCAATACATGCTTAAAGCTTTAATTAATACTTGCTCTGTTTCAGAATGTTTCAAAAAAAATTGTCTCGGGTTCTTCTTATATC] [+] EMBL AK108239 [CCTCCGAACTAGCAATAGAAAATTCCAACATTTTCGCCAACATTAATTCCCATGGGATTGAAGCTTTCTTGCATCAGCCGGCGACGCGGCTCGCCGGTGCCGGCGCCGGCCAGGGTCATCGCCGCCGACGGCTCGCTCAAGGAGCTCCATGCGGCCGCCTCTCCCGCCGTCGCCGACGTGCTCCGCGGCGAGGGCGAGTCCTTCTTCGTGTGCAACTCCGACACGCTCTACTTCAACGAGCAGCCGCCGGCGATGGCGCCGGGGGAGGCGCTCCGGCCGGGGCAGATATACTTCGTGCTCCCGGCGGCGATGCTCGGGCAGCCGCTGTCCACCGCCGACATGGCCGCGCTGGCGGTGCGCGCGAGCGCCGCGCTCGCTGCCGTCAAGGCGCCGCGCCGCCGAGGGGCTCGCCGCGGCGGCGACAGGAAGATGAAGACGGTGCGCGTCACGCCGCTGCGGGACGAGGGCCTCGACGGCGGCGACGTCCTGCTCCACGAGAAGCTCAACGAGCGGACTCTGGGTGAGTTCCCGGCGTCGTGGAGCCCGCCGAAGAGCGGCGGCGAGAAGCTCGCCGCGGCGGCGCGGTCGCGGTTGAAGCGCGTGCTGAGCATCATCCAAGAGGATGCATAAATATTCAATTTTTTCCACTTCTTTTTTGGGGAAACAATTTTTTTTCAGAAGCTCGAAGCCCAATACATGCTTAAAGCTTTAATTAATACTTGCTCTGTTTCAGAATGTTTCAAAAAAAATTGTCTCGGGTTCTTCTTATATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_822#0 --TCCGAACTAGCAATAGAAAATTCCAACATTTTCGCCAACATTAATTCCCATGGTATTG 58 consensus_822#1 CCTCCGAACTAGCAATAGAAAATTCCAACATTTTCGCCAACATTAATTCCCATGGGATTG 60 ***************************************************** **** consensus_822#0 AAGCTTTCTTGCATCAGCCGGCGTACGCGGCTCGCCGGTGCCGGCGCCGGCCAGGGTCAT 118 consensus_822#1 AAGCTTTCTTGCATCAGCCGGCG-ACGCGGCTCGCCGGTGCCGGCGCCGGCCAGGGTCAT 119 *********************** ************************************ consensus_822#0 CGCCGCCGACGGCTCGCTCAAGGAGCTCCATGCGGCCGCCTCTCCCGTCGATCGCCGACG 178 consensus_822#1 CGCCGCCGACGGCTCGCTCAAGGAGCTCCATGCGGCCGCCTCTCCCGCCG-TCGCCGACG 178 *********************************************** ** ********* consensus_822#0 TGCTCCGTGGCGAGGGCGAGTCCTTCTTCGTGTGCAACTTCGACACGCTCTACTTCAACG 238 consensus_822#1 TGCTCCGCGGCGAGGGCGAGTCCTTCTTCGTGTGCAACTCCGACACGCTCTACTTCAACG 238 ******* ******************************* ******************** consensus_822#0 TGCAGCCGCCGGCGATGGCGCCGGGGGTGGTCGCTCCGGCCGGGGCAGATATACTTACGT 298 consensus_822#1 AGCAGCCGCCGGCGATGGCGCCGGGGGAGG-CGCTCCGGCCGGGGCAGATATACTT-CGT 296 ************************** ** ************************* *** consensus_822#0 GCTCCCGTCGGCGATGCTCGGGCAGCCGCTGTCCATCGTCGACATGGTCGCGCTGGCGGT 358 consensus_822#1 GCTCCCGGCGGCGATGCTCGGGCAGCCGCTGTCCACCGCCGACATGGCCGCGCTGGCGGT 356 ******* *************************** ** ******** ************ consensus_822#0 GTTCGCGAGCCGC-CGCTCGCTGCCGTCAAGGCGCCGCTCCGCCGAGGGGTTCGCCGCG- 416 consensus_822#1 GCGCGCGAGCGCCGCGCTCGCTGCCGTCAAGGCGCCGCGCCGCCGAGGGGCTCGCCGCGG 416 * ******* * ************************ *********** ******** consensus_822#0 CGGCGACAGGAAGATTAAGACGGTGCGCGTCACGCCGCTGCGGGACTAGGTGCTCTACGA 476 consensus_822#1 CGGCGACAGGAAGATGAAGACGGTGCGCGTCACGCCGCTGCGGGACGAGGGCCTCGACG- 475 *************** ****************************** *** *** *** consensus_822#0 GCAACGGAGTCCTATTTCCACGAGAAGCTCAACGAGCGGACTCTGGGTGAGTTCCCAGCG 536 consensus_822#1 GCGGCGACGTCCTGCT-CCACGAGAAGCTCAACGAGCGGACTCTGGGTGAGTTCCCGGCG 534 ** ** ***** * *************************************** *** consensus_822#0 TCGTGGAGCTCGCCGAAGAGCG-CAGCGAGAAGATCGC-GCGGCGGCGCGGTCGCGGTTG 594 consensus_822#1 TCGTGGAGCCCGCCGAAGAGCGGCGGCGAGAAGCTCGCCGCGGCGGCGCGGTCGCGGTTG 594 ********* ************ * ******** **** ********************* consensus_822#0 AAGCGCGTGCTGATTATCATCCTAGAGGAAACAAGAATATTCAATTTTTTCAACTTCTTT 654 consensus_822#1 AAGCGCGTGCTGAGCATCATCCAAGAGGATGCATAAATATTCAATTTTTTCCACTTCTTT 654 ************* ******* ****** ** **************** ******** consensus_822#0 TTTGGGGAAACAATATTTTTTCAGAAGCTCGATGCACCAATACAAGCTTAAAGCTTTAAT 714 consensus_822#1 TTTGGGGAAACAATTTTTTTTCAGAAGCTCGAAGC-CCAATACATGCTTAAAGCTTTAAT 713 ************** ***************** ** ******** *************** consensus_822#0 TAATACTTGCACTGTTTCAGAATGTTTCAGAATGTTAGAACACCGTTAGACTTTTTATTA 774 consensus_822#1 TAATACTTGCTCTGTTTCAGAATGTTTCAAAA----AAAATTGTCTCGGG-TTCTTCTTA 768 ********** ****************** ** * ** * * ** ** *** consensus_822#0 CGTGTTTGACCATTCGTCTTATTAAAAAAATTTAAGTAATTATTTATTCTTTTCATATCA 834 consensus_822#1 TATC-------------------------------------------------------- 772 * consensus_822#0 TTTGATTCATTGTAAAATATATTTTCATGTACATATATAGTTTTACATATTTTACAAATT 894 consensus_822#1 ------------------------------------------------------------ consensus_822#0 ATTTTGAATAAGACAAACGGTCAAACATGTGCTAAAAAGTCAACGGTGTCAAACATTTTG 954 consensus_822#1 ------------------------------------------------------------ consensus_822#0 AAACGGATGGAGTATGTTTAATTAGTAGATTTAGAAAGAAAAGAATACTGGGGAAAAAGA 1014 consensus_822#1 ------------------------------------------------------------ consensus_822#0 TTCATAGATGAATCACCCTCTTATATATACGACTTCAATCTGTAGTTGCAAAACTACAAA 1074 consensus_822#1 ------------------------------------------------------------ consensus_822#0 AATGTAAAAAAAAAGTAGATCTTTATACAATTTTACCTGAAG 1116 consensus_822#1 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||