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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_822#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1116 fasta sequence
[TCCGAACTAGCAATAGAAAATTCCAACATTTTCGCCAACATTAATTCCCATGGTATTGAAGCTTTCTTGCATCAGCCGGCGTACGCGGCTCGCCGGTGCCGGCGCCGGCCAGGGTCATCGCCGCCGACGGCTCGCTCAAGGAGCTCCATGCGGCCGCCTCTCCCGTCGATCGCCGACGTGCTCCGTGGCGAGGGCGAGTCCTTCTTCGTGTGCAACTTCGACACGCTCTACTTCAACGTGCAGCCGCCGGCGATGGCGCCGGGGGTGGTCGCTCCGGCCGGGGCAGATATACTTACGTGCTCCCGTCGGCGATGCTCGGGCAGCCGCTGTCCATCGTCGACATGGTCGCGCTGGCGGTGTTCGCGAGCCGCCGCTCGCTGCCGTCAAGGCGCCGCTCCGCCGAGGGGTTCGCCGCGCGGCGACAGGAAGATTAAGACGGTGCGCGTCACGCCGCTGCGGGACTAGGTGCTCTACGAGCAACGGAGTCCTATTTCCACGAGAAGCTCAACGAGCGGACTCTGGGTGAGTTCCCAGCGTCGTGGAGCTCGCCGAAGAGCGCAGCGAGAAGATCGCGCGGCGGCGCGGTCGCGGTTGAAGCGCGTGCTGATTATCATCCTAGAGGAAACAAGAATATTCAATTTTTTCAACTTCTTTTTTGGGGAAACAATATTTTTTCAGAAGCTCGATGCACCAATACAAGCTTAAAGCTTTAATTAATACTTGCACTGTTTCAGAATGTTTCAGAATGTTAGAACACCGTTAGACTTTTTATTACGTGTTTGACCATTCGTCTTATTAAAAAAATTTAAGTAATTATTTATTCTTTTCATATCATTTGATTCATTGTAAAATATATTTTCATGTACATATATAGTTTTACATATTTTACAAATTATTTTGAATAAGACAAACGGTCAAACATGTGCTAAAAAGTCAACGGTGTCAAACATTTTGAAACGGATGGAGTATGTTTAATTAGTAGATTTAGAAAGAAAAGAATACTGGGGAAAAAGATTCATAGATGAATCACCCTCTTATATATACGACTTCAATCTGTAGTTGCAAAACTACAAAAATGTAAAAAAAAAGTAGATCTTTATACAATTTTACCTGAAG]
[+] EMBL AK067104 [TCCGAACTAGCAATAGAAAATTCCAACATTTTCGCCAACATTAATTCCCATGGTATTGAAGCTTTCTTGCATCAGCCGGCGTACGCGGCTCGCCGGTGCCGGCGCCGGCCAGGGTCATCGCCGCCGACGGCTCGCTCAAGGAGCTCCATGCGGCCGCCTCTCCCGTCGATCGCCGACGTGCTCCGTGGCGAGGGCGAGTCCTTCTTCGTGTGCAACTTCGACACGCTCTACTTCAACGTGCAGCCGCCGGCGATGGCGCCGGGGGTGGTCGCTCCGGCCGGGGCAGATATACTTACGTGCTCCCGTCGGCGATGCTCGGGCAGCCGCTGTCCATCGTCGACATGGTCGCGCTGGCGGTGTTCGCGAGCCGCCGCTCGCTGCCGTCAAGGCGCCGCTCCGCCGAGGGGTTCGCCGCGCGGCGACAGGAAGATTAAGACGGTGCGCGTCACGCCGCTGCGGGACTAGGTGCTCTACGAGCAACGGAGTCCTATTTCCACGAGAAGCTCAACGAGCGGACTCTGGGTGAGTTCCCAGCGTCGTGGAGCTCGCCGAAGAGCGCAGCGAGAAGATCGCGCGGCGGCGCGGTCGCGGTTGAAGCGCGTGCTGATTATCATCCTAGAGGAAACAAGAATATTCAATTTTTTCAACTTCTTTTTTGGGGAAACAATATTTTTTCAGAAGCTCGATGCACCAATACAAGCTTAAAGCTTTAATTAATACTTGCACTGTTTCAGAATGTTTCAGAATGTTAGAACACCGTTAGACTTTTTATTACGTGTTTGACCATTCGTCTTATTAAAAAAATTTAAGTAATTATTTATTCTTTTCATATCATTTGATTCATTGTAAAATATATTTTCATGTACATATATAGTTTTACATATTTTACAAATTATTTTGAATAAGACAAACGGTCAAACATGTGCTAAAAAGTCAACGGTGTCAAACATTTTGAAACGGATGGAGTATGTTTAATTAGTAGATTTAGAAAGAAAAGAATACTGGGGAAAAAGATTCATAGATGAATCACCCTCTTATATATACGACTTCAATCTGTAGTTGCAAAACTACAAAAATGTAAAAAAAAAGTAGATCTTTATACAATTTTACCTGAAG]
consensusID : consensus_822#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 772 fasta sequence
[CCTCCGAACTAGCAATAGAAAATTCCAACATTTTCGCCAACATTAATTCCCATGGGATTGAAGCTTTCTTGCATCAGCCGGCGACGCGGCTCGCCGGTGCCGGCGCCGGCCAGGGTCATCGCCGCCGACGGCTCGCTCAAGGAGCTCCATGCGGCCGCCTCTCCCGCCGTCGCCGACGTGCTCCGCGGCGAGGGCGAGTCCTTCTTCGTGTGCAACTCCGACACGCTCTACTTCAACGAGCAGCCGCCGGCGATGGCGCCGGGGGAGGCGCTCCGGCCGGGGCAGATATACTTCGTGCTCCCGGCGGCGATGCTCGGGCAGCCGCTGTCCACCGCCGACATGGCCGCGCTGGCGGTGCGCGCGAGCGCCGCGCTCGCTGCCGTCAAGGCGCCGCGCCGCCGAGGGGCTCGCCGCGGCGGCGACAGGAAGATGAAGACGGTGCGCGTCACGCCGCTGCGGGACGAGGGCCTCGACGGCGGCGACGTCCTGCTCCACGAGAAGCTCAACGAGCGGACTCTGGGTGAGTTCCCGGCGTCGTGGAGCCCGCCGAAGAGCGGCGGCGAGAAGCTCGCCGCGGCGGCGCGGTCGCGGTTGAAGCGCGTGCTGAGCATCATCCAAGAGGATGCATAAATATTCAATTTTTTCCACTTCTTTTTTGGGGAAACAATTTTTTTTCAGAAGCTCGAAGCCCAATACATGCTTAAAGCTTTAATTAATACTTGCTCTGTTTCAGAATGTTTCAAAAAAAATTGTCTCGGGTTCTTCTTATATC]
[+] EMBL AK108239 [CCTCCGAACTAGCAATAGAAAATTCCAACATTTTCGCCAACATTAATTCCCATGGGATTGAAGCTTTCTTGCATCAGCCGGCGACGCGGCTCGCCGGTGCCGGCGCCGGCCAGGGTCATCGCCGCCGACGGCTCGCTCAAGGAGCTCCATGCGGCCGCCTCTCCCGCCGTCGCCGACGTGCTCCGCGGCGAGGGCGAGTCCTTCTTCGTGTGCAACTCCGACACGCTCTACTTCAACGAGCAGCCGCCGGCGATGGCGCCGGGGGAGGCGCTCCGGCCGGGGCAGATATACTTCGTGCTCCCGGCGGCGATGCTCGGGCAGCCGCTGTCCACCGCCGACATGGCCGCGCTGGCGGTGCGCGCGAGCGCCGCGCTCGCTGCCGTCAAGGCGCCGCGCCGCCGAGGGGCTCGCCGCGGCGGCGACAGGAAGATGAAGACGGTGCGCGTCACGCCGCTGCGGGACGAGGGCCTCGACGGCGGCGACGTCCTGCTCCACGAGAAGCTCAACGAGCGGACTCTGGGTGAGTTCCCGGCGTCGTGGAGCCCGCCGAAGAGCGGCGGCGAGAAGCTCGCCGCGGCGGCGCGGTCGCGGTTGAAGCGCGTGCTGAGCATCATCCAAGAGGATGCATAAATATTCAATTTTTTCCACTTCTTTTTTGGGGAAACAATTTTTTTTCAGAAGCTCGAAGCCCAATACATGCTTAAAGCTTTAATTAATACTTGCTCTGTTTCAGAATGTTTCAAAAAAAATTGTCTCGGGTTCTTCTTATATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_822#0 --TCCGAACTAGCAATAGAAAATTCCAACATTTTCGCCAACATTAATTCCCATGGTATTG 58
consensus_822#1 CCTCCGAACTAGCAATAGAAAATTCCAACATTTTCGCCAACATTAATTCCCATGGGATTG 60
***************************************************** ****
consensus_822#0 AAGCTTTCTTGCATCAGCCGGCGTACGCGGCTCGCCGGTGCCGGCGCCGGCCAGGGTCAT 118
consensus_822#1 AAGCTTTCTTGCATCAGCCGGCG-ACGCGGCTCGCCGGTGCCGGCGCCGGCCAGGGTCAT 119
*********************** ************************************
consensus_822#0 CGCCGCCGACGGCTCGCTCAAGGAGCTCCATGCGGCCGCCTCTCCCGTCGATCGCCGACG 178
consensus_822#1 CGCCGCCGACGGCTCGCTCAAGGAGCTCCATGCGGCCGCCTCTCCCGCCG-TCGCCGACG 178
*********************************************** ** *********
consensus_822#0 TGCTCCGTGGCGAGGGCGAGTCCTTCTTCGTGTGCAACTTCGACACGCTCTACTTCAACG 238
consensus_822#1 TGCTCCGCGGCGAGGGCGAGTCCTTCTTCGTGTGCAACTCCGACACGCTCTACTTCAACG 238
******* ******************************* ********************
consensus_822#0 TGCAGCCGCCGGCGATGGCGCCGGGGGTGGTCGCTCCGGCCGGGGCAGATATACTTACGT 298
consensus_822#1 AGCAGCCGCCGGCGATGGCGCCGGGGGAGG-CGCTCCGGCCGGGGCAGATATACTT-CGT 296
************************** ** ************************* ***
consensus_822#0 GCTCCCGTCGGCGATGCTCGGGCAGCCGCTGTCCATCGTCGACATGGTCGCGCTGGCGGT 358
consensus_822#1 GCTCCCGGCGGCGATGCTCGGGCAGCCGCTGTCCACCGCCGACATGGCCGCGCTGGCGGT 356
******* *************************** ** ******** ************
consensus_822#0 GTTCGCGAGCCGC-CGCTCGCTGCCGTCAAGGCGCCGCTCCGCCGAGGGGTTCGCCGCG- 416
consensus_822#1 GCGCGCGAGCGCCGCGCTCGCTGCCGTCAAGGCGCCGCGCCGCCGAGGGGCTCGCCGCGG 416
* ******* * ************************ *********** ********
consensus_822#0 CGGCGACAGGAAGATTAAGACGGTGCGCGTCACGCCGCTGCGGGACTAGGTGCTCTACGA 476
consensus_822#1 CGGCGACAGGAAGATGAAGACGGTGCGCGTCACGCCGCTGCGGGACGAGGGCCTCGACG- 475
*************** ****************************** *** *** ***
consensus_822#0 GCAACGGAGTCCTATTTCCACGAGAAGCTCAACGAGCGGACTCTGGGTGAGTTCCCAGCG 536
consensus_822#1 GCGGCGACGTCCTGCT-CCACGAGAAGCTCAACGAGCGGACTCTGGGTGAGTTCCCGGCG 534
** ** ***** * *************************************** ***
consensus_822#0 TCGTGGAGCTCGCCGAAGAGCG-CAGCGAGAAGATCGC-GCGGCGGCGCGGTCGCGGTTG 594
consensus_822#1 TCGTGGAGCCCGCCGAAGAGCGGCGGCGAGAAGCTCGCCGCGGCGGCGCGGTCGCGGTTG 594
********* ************ * ******** **** *********************
consensus_822#0 AAGCGCGTGCTGATTATCATCCTAGAGGAAACAAGAATATTCAATTTTTTCAACTTCTTT 654
consensus_822#1 AAGCGCGTGCTGAGCATCATCCAAGAGGATGCATAAATATTCAATTTTTTCCACTTCTTT 654
************* ******* ****** ** **************** ********
consensus_822#0 TTTGGGGAAACAATATTTTTTCAGAAGCTCGATGCACCAATACAAGCTTAAAGCTTTAAT 714
consensus_822#1 TTTGGGGAAACAATTTTTTTTCAGAAGCTCGAAGC-CCAATACATGCTTAAAGCTTTAAT 713
************** ***************** ** ******** ***************
consensus_822#0 TAATACTTGCACTGTTTCAGAATGTTTCAGAATGTTAGAACACCGTTAGACTTTTTATTA 774
consensus_822#1 TAATACTTGCTCTGTTTCAGAATGTTTCAAAA----AAAATTGTCTCGGG-TTCTTCTTA 768
********** ****************** ** * ** * * ** ** ***
consensus_822#0 CGTGTTTGACCATTCGTCTTATTAAAAAAATTTAAGTAATTATTTATTCTTTTCATATCA 834
consensus_822#1 TATC-------------------------------------------------------- 772
*
consensus_822#0 TTTGATTCATTGTAAAATATATTTTCATGTACATATATAGTTTTACATATTTTACAAATT 894
consensus_822#1 ------------------------------------------------------------
consensus_822#0 ATTTTGAATAAGACAAACGGTCAAACATGTGCTAAAAAGTCAACGGTGTCAAACATTTTG 954
consensus_822#1 ------------------------------------------------------------
consensus_822#0 AAACGGATGGAGTATGTTTAATTAGTAGATTTAGAAAGAAAAGAATACTGGGGAAAAAGA 1014
consensus_822#1 ------------------------------------------------------------
consensus_822#0 TTCATAGATGAATCACCCTCTTATATATACGACTTCAATCTGTAGTTGCAAAACTACAAA 1074
consensus_822#1 ------------------------------------------------------------
consensus_822#0 AATGTAAAAAAAAAGTAGATCTTTATACAATTTTACCTGAAG 1116
consensus_822#1 ------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||