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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8227#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1341 fasta sequence
[TTAGTATTTTTTTTTCTCTCGGAGAGGAGAAGAGAGAGACCCATTTCCTCCTCGCGTAGTCGCGTGCAGGGGAGAAGAAGGGTTTCGGCGGAGGGAGGAGGAGCCATGGCGGCGGAGGCCGGCAGCGCGGCCGCCGGCGCCGCCTACGAGGAGGAGCGCCGGAAGCGGGTCCTCGAGAACCTCAAGCACCTCGAGGATCTGGGCATAAAGAAGATGTCCAAGAGCTTGCTGGAGGCGGCGAGATTGCAGAAGAGCACTCGTGCCAGCCCCAAGCCGCGGAAGAAGTTTGAGGTTGGGGCCACTGAAGTGAGGCGTTCATCGAGGGCGCGCAACTCGGTTTCGTACAAAGAGAATTTTGATGAACTCAACAGTTTTCTATGCCGTAGAAGGGGCAGTAGGATTAGGAGCACAGAGCAGGGGAGGGATTACACCGGAAGAGTTGCCTCTTATGAACAGCAACAACGTGCTTTCAAAAAAGCTGAGAGACTTCAAAATAGTCTAGACCCTGAGAACCCGTCGTTTGTTAAGACCATGGTTCGATCACATGTGTCCAGCTGCTTTTGGCTTGGTCTTCCAACTAGATTCTGCAAATTGCATCTGCCTCCCAAAGAGTATAAGATGGTCTTGGAGGATGAAGAGGGTGGTGAATTTGATTCTGTCTACATTGGGAACCGTACAGGCCTAAGTGGTGGATGGAGAGGTTTTGCGATGCACCACAACTTGGAAGATGGTGATTCATTGGTCTTTGAATTGGCTGAACCAGACAGATTTAAGATCTACATCATAAAAGCTGTTGATGAGGATGCAAATGAGTCTGAGCCTGCTGATGAGGAAGCTATTGGGGACAAGGACACCAGTACAGAGGATGCAGCTGAGCAGGATGACTCACCTAATGCTGAACCTTTAAAAGGAACTAAGAGGAGAAAACTCCGTGGACGCCGGTAGTAATTAGTTCTATCAGACTTTAAATATTGGTACTCTG-TACAAGTATGCTGCGTATTATCAATTTGCTCTCCTGTCAGGTCATCCTTATTGATCTTTTTTGTTGGCCTTTCCATTTGGTAGATTATGGGTGTTCCACAAGACCATAACCA-CCCTTTTTGTTGCAGCTACGGACAGAGTGTTCACCATCATAGGTAGGTTTAGATAA-CTTGTAAAGAAATGTTGACAATTGAACACTT-GTGTCCTGGAGTCCATCTGTATTGTGCTGATTCACTGTGTTCAGCTTACATGATGGATGAGAACAGCATTGGCTTATGTGGCAATGCTTTTTACCTGTGTCCATGGCTTCTTAAAACTGATCTACAGACCAGAAAGGGAAGACATCGACGAACATTTACA]
[+] EMBL AK068705 [TTAGTATTTTTTTTTCTCTCGGAGAGGAGAAGAGAGAGACCCATTTCCTCCTCGCGTAGTCGCGTGCAGGGGAGAAGAAGGGTTTCGGCGGAGGGAGGAGGAGCCATGGCGGCGGAGGCCGGCAGCGCGGCCGCCGGCGCCGCCTACGAGGAGGAGCGCCGGAAGCGGGTCCTCGAGAACCTCAAGCACCTCGAGGATCTGGGCATAAAGAAGATGTCCAAGAGCTTGCTGGAGGCGGCGAGATTGCAGAAGAGCACTCGTGCCAGCCCCAAGCCGCGGAAGAAGTTTGAGGTTGGGGCCACTGAAGTGAGGCGTTCATCGAGGGCGCGCAACTCGGTTTCGTACAAAGAGAATTTTGATGAACTCAACAGTTTTCTATGCCGTAGAAGGGGCAGTAGGATTAGGAGCACAGAGCAGGGGAGGGATTACACCGGAAGAGTTGCCTCTTATGAACAGCAACAACGTGCTTTCAAAAAAGCTGAGAGACTTCAAAATAGTCTAGACCCTGAGAACCCGTCGTTTGTTAAGACCATGGTTCGATCACATGTGTCCAGCTGCTTTTGGCTTGGTCTTCGAACTAGATTCTGCAAATTGCATCTGCCTCCCAAAGAGTATAAGATGGTCTTGGAGGATGAAGAGGGTGGTGAATTTGATTCTGTCTACATTGGGAACCGTACAGGCCTAAGTGGTGGATGGAGAGGTTTTGCGATGCACCACAACTTGGAAGATGGTGATTCATTGGTCTTTGAATTGGCTGAACCAGACAGATTTAAGATCTACATCATAAAAGCTGTTGATGAGGATGCAAATGAGTCTGAGCCTGCTGATGAGGAAGCTATTGGGGACAAGGACACCAGTACAGAGGATGCAGCTGAGCAGGATGACTCACCTAATGCTGAACCTTTAAAAGGAACTAAGAGGAGAAAACTCCGTGGACGCCGGTAGTAATTAGTTCTATCAGACTTTAAATATTGGTACTCTG TACAAGTATGCTGCGTATTATCAATTTGCTCTCCTGTCAGGTCATCCTTATTGATCTTTTTTGTTGGCCTTTCCATTTGGTAGATTATGGGTGTTCCACAAGACCATAACCA CCCTTTTTGTTGCAGCTACGGACAGAGTGTTCACCATCATAGGTAGGTTTAGATAA CTTGTAAAGAAATGTTGACAATTGAACACTT GTGTCCTGGAGTCCATCTGTATTGTGCTGATTCACTGTGTTCAGCTTACATGATGGATGAGAACAGCATTGGCTTATGTGGCAATGCTTTTTACCTGTGTCCATGGCTTCTTAAAACTGATCTACAGACCAGAAAGGGAAGACATCGACGAACATTTACA]
[+] EMBL BP185046 [ acgaggAACAGTTTTCTATGCCGTAGAAGGGGCAGTAGGATATGGAGCACAGAGCAGGGGAGGGATTACACCGGAAGAGTTGCCTCTTATGAACAGCAACAACGTGCTTTCAAAAAAGCTGAGAGACTTCAAAATAGTCTAGACCCTGAGAACCCGTCGTTTGTTAAGACCATGGTTCGATCACATGTGTCCAGCTGCTTTTGGCTTGGTCTTCCAACTAGATTCTGCAAATTGCATCTGCCTCCCAAAGAGTATAAGATGGTCTTGGAGGATGAAGAGGGTGGTGAATTTGATTCTGTCTACATTGGGAACCGTACAGGCCTAAGTGGTGGATGGAGAGGTTTTGCGATGCACCACAACTTGGAAGATGGTGATTCATTGGTCTTTGAATTGGCTGAACCAGACAGATTTAAGATCTACATCATAAAAGCTGTTGATGAGGATGCAAATGAGTCTGAGCCTGCTGATGAGGAAGCTATTGGGGACAAGGACACCAGTACAGAGGATGC ]
[+] EMBL CA764122 [ caAGGGGAGGGATTACACCGGAAGAGTTGCCTCTTATGAACAGCAACAACGTGCTTTC AAAAAGCTGAGAGACTTCAAAATAGTCTAGACCCTGAGAACCCGTCGTTTGTTAAGACCATGGTTCGATCACATGTGTCCAGCTGCTTTTGGCTTGGTCTTCCAACTAGATTCTGCAAATTGCATCTGCCTCCCAAAGAGTATAAGATGGTCTTGGAGGATGAAGAGGGTGGTGAATTTGATTCTGTCTACATTGGGAACCGTACAGGCCTAAGTGGTGGATGGAGAGGTTTTGCGATGCACCACAACTTGGAAGACGGTGATTCATTGGTCTTTGAATTGGCTGAACCAGACAGATTTAAGATCTACATCATAAAAGCTGTTGATGAGGATGCAAATGAGTCTGAGCCTGCTGATGAGGAAGCTATTGGGGACAAGGACACCAGTACAGAGGATGCAGCTGAGCAGGATGACTCACCTAATGCTGAACCTTTAAAAGGAACTAAGAGGAGAAAACTCCGTGGACGCCGGTAGTAATTAGTTCTATCAGACTTTAAATATTGGTACTCTG TACAAGTATGCTGCGTATTATCAATTTGCTCTNCAGTCAGGTCATCCTTATTGATCTTTTTTGNTGGCCTTTNCATTTGGTAGATTATGGGTGGTNCACAAGACCATAANCACCCCTTTTTGNTGCAGCTACGGACAGAGTGGTCACCATCATAGGTAGGGTTANATAACCTTGNAAAGAAATGTTGACAATTGNACACTTGGGGNCCGGGAGTCCATCTGGATTGGGCTGATTCACTGGGGTCAGCTTACATGATGGATGANAACAGCATTGGCTTATGGGGCAANGCNTTTTACCTGGGGCCATGGCTTNTTAA ]
[+] EMBL AA749669 [ GCTGATGAGGAAGCTATTGGGGACAAGGACACCAGTACAGAGGATGCAGCTGAGCAGGATGACTCACCTAATGCTGAACCTTTAAAAGGAACTAAGAGGAGAAAACTCCGTGGACGCCGGTAGTAATTAGTTCTATCAGACTTTAAATATTGGTACTCTGCTA AAGTATGCTGCGTATTATCAATTTGCTCTCCT GTCATCCTTATTGATCTTTTTTGTTGGCC ]
consensusID : consensus_8227#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 785 fasta sequence
[GCCCTATCCACTTTCGATGGTAGGATAGGGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCGCTTTAGTGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCCACTGAAGTGAGGCGTTCATCGAGGGCGCGCAACTCGGTTTCGTACAAAGAGAATTTTGATGAACTCAACAGTTTTCTATGCCGTAGAAGGGGCAGTAGGATTAGGAGCACAGAGCAGGGGAGGGATTACACCGGAAGAGTTGCCTCTTATGAACAGCAACAACGTGCTTTCAAAAAAGCTGAGAGACTTCAAAATAGTCTAGACCCTGAGAACCCGTCGTTTGTTAAGACCATGGTTCGATCACATGTGTCCAGCTGCTTTTGGCTTGGTCTTCCAACTAGATTCTGCAAATTGCATCTGCCTCCCAAAGAGTATAAGATGGTCTTGGAGGATGAAGAGGGTGGTGAATTTGATTCTGTCTACATTGGGAACCGTACAGGCCTAAGTGGTGGATGGAGAGGTTTTGCGATGCACCACAACTTGGAAGATGGTGATTCATTGGTCTTTGAATTGGCTGAACCAGACAGATTTAAGATCTACATCATAAAAGCTGTTGATGAGGATGNCAATGAGTCTGAGCCTGCTGATGAGGAAGC]
[+] EMBL CB661928 [GCCCTATCCACTTTCGATGGTAGGATAGGGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCGCTTTAGTGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCCACTGAAGTGAGGCGTTCATCGAGGGCGCGCAACTCGGTTTCGTACAAAGAGAATTTTGATGAACTCAACAGTTTTCTATGCCGTAGAAGGGGCAGTAGGATTAGGAGCACAGAGCAGGGGAGGGATTACACCGGAAGAGTTGCCTCTTATGAACAGCAACAACGTGCTTTCAAAAAAGCTGAGAGACTTCAAAATAGTCTAGACCCTGAGAACCCGTCGTTTGTTAAGACCATGGTTCGATCACATGTGTCCAGCTGCTTTTGGCTTGGTCTTCCAACTAGATTCTGCAAATTGCATCTGCCTCCCAAAGAGTATAAGATGGTCTTGGAGGATGAAGAGGGTGGTGAATTTGATTCTGTCTACATTGGGAACCGTACAGGCCTAAGTGGTGGATGGAGAGGTTTTGCGATGCACCACAACTTGGAAGATGGTGATTCATTGGTCTTTGAATTGGCTGAACCAGACAGATTTAAGATCTACATCATAAAAGCTGTTGATGAGGATGNCAATGAGTCTGAGCCTGCTGATGAGGAAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8227#0 TTAGTATTTTTTTTTCTCTCGGAGAGGAGAAGAGAGAGACCCATTTCC--TCCTCGCGTA 58
consensus_8227#1 ---------------------------------GCCCTATCCACTTTCGATGGTAGGATA 27
* * *** ** * * * * **
consensus_8227#0 GTCGCGTGCAGGGGAGAAGAAGGGTTTCGGCGGAGGGAGGAGGAGCCATGGCGGCGGAGG 118
consensus_8227#1 GGGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGC 87
* ** * * ** * ** **** *** * * ** ** * ****
consensus_8227#0 CCGGCAGCGCGGCCGCCGGCGCCGCCTACGAGGAGGAGCGCCGGAAGCGGGTCCTCGAGA 178
consensus_8227#1 CTGAGAA-ACGGCTACCA------CATCCAAGGAAG-GCAGCAGGCGCGCAAATTACCCA 139
* * * **** ** * * * **** * ** * * *** * *
consensus_8227#0 ACCTCAAGCACCTCGAGGATCTGGGCATAAAGAAGATGTCCAAGAGCTTGCTGGAGGCGG 238
consensus_8227#1 ATCCTGA-CACGGGGAGGTAGTGACAATAAATAACAATACCGGGCGCTT--TAGTGTCTG 196
* * * *** **** ** ***** ** * ** * **** * * * * *
consensus_8227#0 CGAGATTGCAGAAGAGCACTCGTGCCAGCCCCAAGCCGCGGAAGAAGTTTGAGGTTGGGG 298
consensus_8227#1 -GTAATTGGA-ATGAGTAC-------AATCTAAATCCCTTAACGAGGATCCATTGGAGGG 247
* **** * * *** ** * * ** ** * ** * * * ***
consensus_8227#0 CCACTGAAGTGAGGCGTTCATCGAGGGCGCGCAACTCGGTTTCGTACAAAGAGAATTTTG 358
consensus_8227#1 CCACTGAAGTGAGGCGTTCATCGAGGGCGCGCAACTCGGTTTCGTACAAAGAGAATTTTG 307
************************************************************
consensus_8227#0 ATGAACTCAACAGTTTTCTATGCCGTAGAAGGGGCAGTAGGATTAGGAGCACAGAGCAGG 418
consensus_8227#1 ATGAACTCAACAGTTTTCTATGCCGTAGAAGGGGCAGTAGGATTAGGAGCACAGAGCAGG 367
************************************************************
consensus_8227#0 GGAGGGATTACACCGGAAGAGTTGCCTCTTATGAACAGCAACAACGTGCTTTCAAAAAAG 478
consensus_8227#1 GGAGGGATTACACCGGAAGAGTTGCCTCTTATGAACAGCAACAACGTGCTTTCAAAAAAG 427
************************************************************
consensus_8227#0 CTGAGAGACTTCAAAATAGTCTAGACCCTGAGAACCCGTCGTTTGTTAAGACCATGGTTC 538
consensus_8227#1 CTGAGAGACTTCAAAATAGTCTAGACCCTGAGAACCCGTCGTTTGTTAAGACCATGGTTC 487
************************************************************
consensus_8227#0 GATCACATGTGTCCAGCTGCTTTTGGCTTGGTCTTCCAACTAGATTCTGCAAATTGCATC 598
consensus_8227#1 GATCACATGTGTCCAGCTGCTTTTGGCTTGGTCTTCCAACTAGATTCTGCAAATTGCATC 547
************************************************************
consensus_8227#0 TGCCTCCCAAAGAGTATAAGATGGTCTTGGAGGATGAAGAGGGTGGTGAATTTGATTCTG 658
consensus_8227#1 TGCCTCCCAAAGAGTATAAGATGGTCTTGGAGGATGAAGAGGGTGGTGAATTTGATTCTG 607
************************************************************
consensus_8227#0 TCTACATTGGGAACCGTACAGGCCTAAGTGGTGGATGGAGAGGTTTTGCGATGCACCACA 718
consensus_8227#1 TCTACATTGGGAACCGTACAGGCCTAAGTGGTGGATGGAGAGGTTTTGCGATGCACCACA 667
************************************************************
consensus_8227#0 ACTTGGAAGATGGTGATTCATTGGTCTTTGAATTGGCTGAACCAGACAGATTTAAGATCT 778
consensus_8227#1 ACTTGGAAGATGGTGATTCATTGGTCTTTGAATTGGCTGAACCAGACAGATTTAAGATCT 727
************************************************************
consensus_8227#0 ACATCATAAAAGCTGTTGATGAGGATGCAAATGAGTCTGAGCCTGCTGATGAGGAAGCTA 838
consensus_8227#1 ACATCATAAAAGCTGTTGATGAGGATGNCAATGAGTCTGAGCCTGCTGATGAGGAAGC-- 785
*************************** *****************************
consensus_8227#0 TTGGGGACAAGGACACCAGTACAGAGGATGCAGCTGAGCAGGATGACTCACCTAATGCTG 898
consensus_8227#1 ------------------------------------------------------------
consensus_8227#0 AACCTTTAAAAGGAACTAAGAGGAGAAAACTCCGTGGACGCCGGTAGTAATTAGTTCTAT 958
consensus_8227#1 ------------------------------------------------------------
consensus_8227#0 CAGACTTTAAATATTGGTACTCTGTACAAGTATGCTGCGTATTATCAATTTGCTCTCCTG 1018
consensus_8227#1 ------------------------------------------------------------
consensus_8227#0 TCAGGTCATCCTTATTGATCTTTTTTGTTGGCCTTTCCATTTGGTAGATTATGGGTGTTC 1078
consensus_8227#1 ------------------------------------------------------------
consensus_8227#0 CACAAGACCATAACCACCCTTTTTGTTGCAGCTACGGACAGAGTGTTCACCATCATAGGT 1138
consensus_8227#1 ------------------------------------------------------------
consensus_8227#0 AGGTTTAGATAACTTGTAAAGAAATGTTGACAATTGAACACTTGTGTCCTGGAGTCCATC 1198
consensus_8227#1 ------------------------------------------------------------
consensus_8227#0 TGTATTGTGCTGATTCACTGTGTTCAGCTTACATGATGGATGAGAACAGCATTGGCTTAT 1258
consensus_8227#1 ------------------------------------------------------------
consensus_8227#0 GTGGCAATGCTTTTTACCTGTGTCCATGGCTTCTTAAAACTGATCTACAGACCAGAAAGG 1318
consensus_8227#1 ------------------------------------------------------------
consensus_8227#0 GAAGACATCGACGAACATTTACA 1341
consensus_8227#1 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||