These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8239#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 821 fasta sequence [AGCTCTCTGAGCTCTCCTCTTCTCCCTCTCTCCCATGCTAGCCATCGGTTGATCTCCCTCACCGGAGCATTGCCGACCAAATACTCGCGCCAATAGCTTCGCCTCAATGAAGTGAATCCATTTTCCTACTTTCCCCTCTTCCCTACCCATTCCATGATCAAGCCACCACA-GCTACCTCTTTTGCTGCCGGAGTTTATCTCTTGCCCTCGCCGTTCCGGCCTCCTCTCTCAGTGCTTGTGTATGAAGCCACC-CTCCCTAGATGCGCGTCGCTCGGGAACATCATCTGCCGCCGACGCTACCTTTCCCTGTCCACCGGAGCACCAGCGCCCTTCTCTCCCTCCTCTCAGTTCCCTGGCAAGAAGCAGAGAAGAGGATGATGGGAGGAAGAAGGACAAAAAAAAAAAAGAGAAAAGAAAAGCCTGACAAGTGGGCCCATAAACAGTACTGTCTCCATTTCTCGATTTCAAGTTATAAGACGNTTTGTCCAAAGTCAAAACGTCTTATAACATGAAACGGAGGGAGTTACCTTTAGTATTTTCTAGATTTAATCCAAATCCTATTATTTAGAAGCCCATATCTCCTAAACCATATATCCGATTCCAATGAAATTTGACCTAAATTCATCTAAATTCAAACTCTACATTTTGATATCAGACTTGCTATTTTAAGATTTATTTGAATTTCCTTAATTACCATTTGAATTTATATTTGATTCAAACTTATATTTGAATTCTTACTTTAAACTTATATTTGATTATCGCATATCTTCTTTCATTCCAAAATACCCATTAGCCCCTAAAGAGCCGCCGGTTGGAACTTTA] [+] EMBL CF330986 [AGCTCTCTGAGCTCTCCTCTTCTCCCTCTCTCCCATGCTAGCCATCGGTTGATCTCCCTCACCGGAGCATTGCCGACCAAATACTCGCGCCAATAGCTTCGCCTCAATGAAGTGAATCCATTTTCCTACTTTCCCCTCTTCCCTACCCATTCCATGATCAAGCCACCACA GCTACCTCTTTTGCTGCCGGAGTTTATCTCTTGCCCTCGCCGTTCCGGCCTCCTCTCTCAGTGCTTGTGTATGAAGCCACC CTCCCTAGATGCGCGTCGCTCGGGAACATCATCTGCCGCCGACGCTACCTTTCCCTGTCCACCGGAGCACCAGCGCCCTTCTCTCCCTCCTCTCAGTTCCCTGGCAAGAAGCAGAGAAGAGGATGATGGGAGGAAGAAGGACAAAAAAAAAAA ] [-] EMBL CF330985 [ ATCAAGCCACCACAGGCTACCTCTTTTGCTGCCGGAGTTGAGCTCTTGCCCTCGCCGTTCCGGCCTCCTCTTTCAGTGCTTGTGTATGAAGCCACCTCTCCCTAGATGCGCGTCGCTCGGGAACATCATCTGCCGCCGACGCTACCTTTCCCTGTCCACCGGAGCACCAGCGCCCTTCTCTCCCTCCTTTCAGTTCCCTGGCAAGAAGCAGAGAAGAGGATGATGGGAGGAAGAAGGCCAAAAAAAAAAAA ] [+] EMBL CF306099 [ TCAGTTCCCTGGCAAGAAGCAGAGAAGAGGATGATGGGAGGAAGAAGGACAAGAAAAAGAGAGAGAAAAGAAAAGCCTGACAAGTGGGCCCATAAACAGTACTGTCTCCATTTCTCGATTTCAAGTTATAAGACGNTTTGTCCAAAGTCAAAACGTCTTATAACATGAAACGGAGGGAGTTACCTTTAGTATTTTCTAGATTTAATCCAAATCCTATTATTTAGAAGCCCATATCTCCTAAACCATATATCCGATTCCAATGAAATTTGACCTAAATTCATCTAAATTCAAACTCTACATTTTGATATCAGACTTGCTATTTTAAGATTTATTTGAATTTCCTTAATTACCATTTGAATTTATATTTGATTCAAACTTATATTTGAATTCTTACTTTAAACTTATATTTGATTATCGCATATCTTCTTTCATTCCAAAATACCCATTAGCCCCTAAAGAGCCGCCGGTTGGAACTTTA] consensusID : consensus_8239#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence [GCTCTCTGAGCTCTCCTCTTCTCTCTCTCTCCCATGCTAGCCATCGGTTGATCTCCCTCACCGGAGCATTGCCGACCAAATACTCGCGCCAATAGCTTCGCCTCAATGAAGTGAATCCATTTTCCTACTTTCCCCTCTTCCCTACCCATTCCATGATCAAGCCACCACAGCTACCTCTTTTGCTGCCGGAGTTGAGCTCTTGCCCTCGCCGTTCCGGCCATCTCCCTTTCTCTCTCCACCAGCCACCGACCTCCCCGGGTGCGTCGTGCTCGGGAACACGCGTGGACGCCGACGTCACCGCCCTCCAGCCACCGGAGCGCCGCCGCCCCGATTGCCTTCTCCTCTCTCTTCTCTCGGCTCTCTCTGGAACAGAGAAGAAGAAAGGAACGGGAGGAAGAAGGAGAAGAAAAAGAAAAAGACTGACAGTAGAGTCTATTGTCTTTTGGATGGCAACCTATGGTATTTCAAGAATTGGATAATCAGGTTGCCTATCTTGGATTTATTTGCGTTGGAG] [+] EMBL CF319415 [GCTCTCTGAGCTCTCCTCTTCTCTCTCTCTCCCATGCTAGCCATCGGTTGATCTCCCTCACCGGAGCATTGCCGACCAAATACTCGCGCCAATAGCTTCGCCTCAATGAAGTGAATCCATTTTCCTACTTTCCCCTCTTCCCTACCCATTCCATGATCAAGCCACCACAGCTACCTCTTTTGCTGCCGGAGTTGAGCTCTTGCCCTCGCCGTTCCGGCCATCTCCCTTTCTCTCTCCACCAGCCACCGACCTCCCCGGGTGCGTCGTGCTCGGGAACACGCGTGGACGCCGACGTCACCGCCCTCCAGCCACCGGAGCGCCGCCGCCCCGATTGCCTTCTCCTCTCTCTTCTCTCGGCTCTCTCTGGAACAGAGAAGAAGAAAGGAACGGGAGGAAGAAGGAGAAGAAAAAGAAAAAGACTGACAGTAGAGTCTATTGTCTTTTGGATGGCAACCTATGGTATTTCAAGAATTGGATAATCAGGTTGCCTATCTTGGATTTATTTGCGTTGGAG] consensusID : consensus_8239#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 258 fasta sequence [GAAGCAGANAAGAGGATGATGGGAGGAAGAAGGACAAGAAAAAGAGAGAGAAAAGAAAAGCCTGACAAGTGGGCCCAAAACGTCTTATAACATGAAACGGAGGGAGTAACCTTTAGTATTTTCTAGATTTAATCCAAATCCTATTATTTAGAAGCCCATATCTCCTAAACCATATATCCGATTCCAATGAAATTTGACCTAAATTCATCTAAATTCAAACTCTACATTTTGATATCAGACTTGCTATTTTAAGATTTA] [+] EMBL C28134 [GAAGCAGANAAGAGGATGATGGGAGGAAGAAGGACAAGAAAAAGAGAGAGAAAAGAAAAGCCTGACAAGTGGGCCCAAAACGTCTTATAACATGAAACGGAGGGAGTAACCTTTAGTATTTTCTAGATTTAATCCAAATCCTATTATTTAGAAGCCCATATCTCCTAAACCATATATCCGATTCCAATGAAATTTGACCTAAATTCATCTAAATTCAAACTCTACATTTTGATATCAGACTTGCTATTTTAAGATTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8239#0 AGCTCTCTGAGCTCTCCTCTTCTCCCTCTCTCCCATGCTAGCCATCGGTTGATCTCCCTC 60 consensus_8239#2 ------------------------------------------------------------ consensus_8239#1 ------------------------------------------------------------ consensus_8239#0 ACCGGAGCATTGCCGACCAAATACTCGCGCCAATAGCTTCGCCTCAATGAAGTGAATCCA 120 consensus_8239#2 ------------------------------------------------------------ consensus_8239#1 ------------------------------------------------------------ consensus_8239#0 TTTTCCTACTTTCCCCTCTTCCCTACCCATTCCATGATCAAGCCACCACAGCTACCTCTT 180 consensus_8239#2 ------------------------------------------------------------ consensus_8239#1 ------------------------------------------------------------ consensus_8239#0 TTGCTGCCGGAGTTTATCTCTTGCCCTCGCCGTTCCGGCCTCCTCTCTCAGTGCTTGTGT 240 consensus_8239#2 ------------------------------------------------------------ consensus_8239#1 ------------------------------------------------------------ consensus_8239#0 ATGAAGCCACCCTCCCTAGATGCGCGTCGCTCGGGAACATCATCTGCCGCCGACGCTACC 300 consensus_8239#2 ------------------------------------------------------------ consensus_8239#1 ------------------------------------------------------------ consensus_8239#0 TTTCCCTGTCCACCGGAGCACCAGCGCCCTTCTCTCCCTCCTCTCAGTTCCCTGGCAAGA 360 consensus_8239#2 ----------------------------------------------------------GA 2 consensus_8239#1 --------------------------GCTCTCTGAGCTCTCCTCTTCTCTCTCTCTCCCA 34 * consensus_8239#0 AGCAGAGAAGAGGATGATG------GGAGGAAGAAGGACAAAAAAAAAAAAGAG--AAAA 412 consensus_8239#2 AGCAGANAAGAGGATGATG------GGAGGAAGAAGGACAAGAAAAAGAGAGAG--AAAA 54 consensus_8239#1 TGCTAGCCATCGGTTGATCTCCCTCACCGGAGCATTGCCGACCAAATACTCGCGCCAATA 94 ** * ** **** *** * * * * *** * * ** * consensus_8239#0 GAAAAGCCTGAC--AAGTGGGCCCATAAACAGTACTGTCTCCATTTCTCGATTTCAAGTT 470 consensus_8239#2 GAAAAGCCTGAC--AAGTGGGCCCA----------------------------------- 77 consensus_8239#1 GCTTCGCCTCAATGAAGTGAATCCATTTTCCTACTTTCCCCTCTTCC-------CTACCC 147 * **** * ***** *** consensus_8239#0 ATAAGACGNTTTGTCCAAAGTCAAAACGTCTTATAACATGAAACGGAGGGAGTTACCTTT 530 consensus_8239#2 -----------------------AAACGTCTTATAACATGAAACGGAGGGAGTAACCTTT 114 consensus_8239#1 ATTCCATGATCAAGCCACCACAGCTACCTCTTTTGCTGCCGGAGTTGAGCTCTTGCCCTC 207 ** **** * * * * ** * consensus_8239#0 AGTATTTTCTAGATTTAATCCAAATCCTATTATTTAGAAGCCCATATCTCCTAAACCAT- 589 consensus_8239#2 AGTATTTTCTAGATTTAATCCAAATCCTATTATTTAGAAGCCCATATCTCCTAAACCAT- 173 consensus_8239#1 GCCGT--TCCGGCCATCTCCCTTTCTCTCTCCACCAGCCACCGACCTCCCCGGGTGCGTC 265 * ** * * ** ** * ** ** * ** ** * * consensus_8239#0 ATATCCGATTCCA---ATGAAATTTGACCTAA---------ATTCATCTAAATTCAAACT 637 consensus_8239#2 ATATCCGATTCCA---ATGAAATTTGACCTAA---------ATTCATCTAAATTCAAACT 221 consensus_8239#1 GTGCTCGGGAACACGCGTGGACGCCGACGTCACCGCCCTCCAGCCACCGGAGCGCCGCCG 325 * ** ** ** * *** * * * ** * * * * consensus_8239#0 CTACATTTTGATATCAGACTTGCTATTTTAAGATTTATTTGAATTTCCTTAATTACCATT 697 consensus_8239#2 CTACATTTTGATATCAGACTTGCTATTTTAAGATTTA----------------------- 258 consensus_8239#1 CCCCGATTGCCTTCTCCTCTCTCTTCTCTCGGCTCTCTCTGGAACAGAGAAGAAGAAAGG 385 * * ** * ** ** * * * * * consensus_8239#0 TGAATTTATATTTGATTCAAACTTATATTTGAATTCTTACTTTAAACTTATATTTGATTA 757 consensus_8239#2 ------------------------------------------------------------ consensus_8239#1 AACGGGAGGAAGAAGGAGAAGAAAAAGAAAAAGACTGACAGTAGAGTCTATTGTCTTTTG 445 consensus_8239#0 TCGCATATCTTCTTTCATTCCAAAATACCCATTAGCCCCTAAAGAGCCGCCGGTTGGAAC 817 consensus_8239#2 ------------------------------------------------------------ consensus_8239#1 GATGGCAACCTATGGTATTTCAAGAATTGGATAATCAGGTTGCCTATCTTGGATTTATTT 505 consensus_8239#0 TTTA----- 821 consensus_8239#2 --------- consensus_8239#1 GCGTTGGAG 514 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||