These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8243#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2197 fasta sequence [ACCACCACCACCTCCCCCGTCCTCCTCTCCTCCACCGCAACCGCAACCACGGCCAGCCACGGGCCAAGCGAGTCACGACTGGCACAACGAGGCAAAAACACCATTGCTACCCCCGAGGCGTCCCTCTCAGCTAGCCCTGGCACCCGCACCACCTAGCGGCGGCGCCGTCGTGTTCGTGTCGGCCAAGTCGTCAAGAAGCTAGCTAGTCATTGCCAGTGGGCGCATTGTGCTAGGGGATGGCGAGAGGAGGAGGAGGAGGAGAGGAGGCGGCGGAGGAGGAGAGGGAGGTGAGCGAGGCGCTGACGGCGGACTCGTCGGCCGACGAGGAGTGCCGCCGCGGGAGCAGCAGCTCCAGCGCAAGCTCCGGGGACGCCTCCAGCGAGTCCTACTGCCCGCCCGACGAGTGGCAGAAGGTGGCCATCAAGACCTGCGTGTCGTCCGACCTCGTCGTCGTCTCGGCCGAGCCGGCCAAGGAGAAGAAGCCGCCGCCGCCGCCGTCGTCGCCGCGTGTCGACGCCGCCCCGGCGGACAAGCACCACCGGCCCTCAGAGATGGAGATGATGAAGGAGAGGTTCGCGAAGCTGCTGCTCGGCGAGGACATGTCCGGCGGCGGCAAGGGCGTCTGCACCGCGCTCGCCATCTCCAACGCCATCACCAACCTCTGCGCGACGATATTTGGGCAGCTGTGGAGGCTGGAGCCGCTGCTGCCGGAGAAAAAGACGATGTGGCGGCGCGAGATGGACTGGCTGCTCTGCGTCAGCGACCACATCGTCGAGCTAGTCCCCACATGGCAGACATTCCCCGACGGGAGTAAGCTTGAGATCATGACAAGCAGGCCACGGTCTGATCTCTACATCAATCTGCCCGCACTCCGAAAGCTAGACCACATGCTCCTCGAAATTCTGGAGAGCTTCAGGGACCCGGAATTCTGGTACGTCGACCAGGGGATTTGCCCGCCGGACCGCGACGGCAGCGCCCCCTTCATGCTAACGTTCCACCGCCGCGACGAGAAGTGGTGGCTGCCCGTGCCCCGCGTCCCTCCCGGCGGCGTCGGCGAGACCACGAGGAGGCAGCTCGAGCACAAGCGCGACTGCGCCAGCCAGATCTTCAAGGCCGCCATGGCCATCAACAGCAACGCCCTCGCCGAAATGGACGTCCCCGACTCTTACCTCGACTCGTTACCCAAGAACGGGCGTGCGACGCTGGGCGACATCATATACAGGTACATCACGTCGGACCAGTTCTCGCCGGACTGCCTGCTCGACTGCCTCGACCTGTCGTCGGAGTACCAGGCGCTGGAGATCGCCAACCGCGTCGAGGCCTCCATCTACGTGTGGCGCCGGAGGGGCACGTCGGGCGCCGCGAGCCGCGCCGGAAACAAGTCGTCATGGGGCATCGTCAAGGACATGATCATGGACACGGAGAAGAGAGACGACCTCCTCGCCGACCGCGCCGAGGGCCTCCTCATGTGCCTCAAGCAGAGGTTCCCCGGACTGACGCAGACCAGCCTGGACACGAGCAAGATTCAGTACAACAAGGATGTGGGGAAATCGATTCTGGAGAGCTACTCGAGGGTTCTGGAGAGCCTGGCGTCGAACATCATCGCGCGGATCGACGACCTGCTGTACGTCGACGAGCGGA-CAGGCAGGCGGA-CTGCTTCCAACCGCGGGCGCCGGGAGCGGCAAGATCTCTTGCATGCCGGCCATGTCGGCGTCGTCGGTGCCGGCGTACCCGGTGGTGTCCACCTCGGGCACCCCGCCGCCGTACGCGACGGCGTACGCCAC-GCCGAGCTTCTCGCCGGCGCA-NTGTCCGAGCCCATCCAACATCGGGAGGGCACTGCTGGTCGACCGGCGGT-NC-ACGACGGCCGAGCGTTCGACGGCAGCATGGAGTTCATGGGGATGGCGGTCAGCAACGCCGTG-TTCGACCTACCGGGCCTGTGAATCGATCGATCACGGGCCCCGTGTCT-AGTGCTTTACTTACCCTCGCCTGTGTGCAGTAG-TTGTAATGTTGTATGGCGTGATTTCTTCTCGGGAGGGCGGCCTGTTTTTGCCGTTTCGCCGTTTCGCCGCCCTCCAGTTTTATGATGTGTTTTGACAGTGCCTTTGTTAACTTGCTAGTGTTGTAAGAGTGCTTAAGTTCGATGTTGGTCGGATGGCAAAAGAGAACCATCGCGTTTGTGCAAACCACAGAGTTTTCT] [+] EMBL AK101945 [ACCACCACCACCTCCCCCGTCCTCCTCTCCTCCACCGCAACCGCAACCACGGCCAGCCACGGGCCAAGCGAGTCACGACTGGCACAACGAGGCAAAAACACCATTGCTACCCCCGAGGCGTCCCTCTCAGCTAGCCCTGGCACCCGCACCACCTAGCGGCGGCGCCGTCGTGTTCGTGTCGGCCAAGTCGTCAAGAAGCTAGCTAGTCATTGCCAGTGGGCGCATTGTGCTAGGGGATGGCGAGAGGAGGAGGAGGAGGAGAGGAGGCGGCGGAGGAGGAGAGGGAGGTGAGCGAGGCGCTGACGGCGGACTCGTCGGCCGACGAGGAGTGCCGCCGCGGGAGCAGCAGCTCCAGCGCAAGCTCCGGGGACGCCTCCAGCGAGTCCTACTGCCCGCCCGACGAGTGGCAGAAGGTGGCCATCAAGACCTGCGTGTCGTCCGACCTCGTCGTCGTCTCGGCCGAGCCGGCCAAGGAGAAGAAGCCGCCGCCGCCGCCGTCGTCGCCGCGTGTCGACGCCGCCCCGGCGGACAAGCACCACCGGCCCTCAGAGATGGAGATGATGAAGGAGAGGTTCGCGAAGCTGCTGCTCGGCGAGGACATGTCCGGCGGCGGCAAGGGCGTCTGCACCGCGCTCGCCATCTCCAACGCCATCACCAACCTCTGCGCGACGATATTTGGGCAGCTGTGGAGGCTGGAGCCGCTGCTGCCGGAGAAAAAGACGATGTGGCGGCGCGAGATGGACTGGCTGCTCTGCGTCAGCGACCACATCGTCGAGCTAGTCCCCACATGGCAGACATTCCCCGACGGGAGTAAGCTTGAGATCATGACAAGCAGGCCACGGTCTGATCTCTACATCAATCTGCCCGCACTCCGAAAGCTAGACCACATGCTCCTCGAAATTCTGGAGAGCTTCAGGGACCCGGAATTCTGGTACGTCGACCAGGGGATTTGCCCGCCGGACCGCGACGGCAGCGCCCCCTTCATGCTAACGTTCCACCGCCGCGACGAGAAGTGGTGGCTGCCCGTGCCCCGCGTCCCTCCCGGCGGCGTCGGCGAGACCACGAGGAGGCAGCTCGAGCACAAGCGCGACTGCGCCAGCCAGATCTTCAAGGCCGCCATGGCCATCAACAGCAACGCCCTCGCCGAAATGGACGTCCCCGACTCTTACCTCGACTCGTTACCCAAGAACGGGCGTGCGACGCTGGGCGACATCATATACAGGTACATCACGTCGGACCAGTTCTCGCCGGACTGCCTGCTCGACTGCCTCGACCTGTCGTCGGAGTACCAGGCGCTGGAGATCGCCAACCGCGTCGAGGCCTCCATCTACGTGTGGCGCCGGAGGGGCACGTCGGGCGCCGCGAGCCGCGCCGGAAACAAGTCGTCATGGGGCATCGTCAAGGACATGATCATGGACACGGAGAAGAGAGACGACCTCCTCGCCGACCGCGCCGAGGGCCTCCTCATGTGCCTCAAGCAGAGGTTCCCCGGACTGACGCAGACCAGCCTGGACACGAGCAAGATTCAGTACAACAAGGATGTGGGGAAATCGATTCTGGAGAGCTACTCGAGGGTTCTGGAGAGCCTGGCGTCGAACATCATCGCGCGGATCGACGACCTGCTGTACGTCGACGAGCGGAGCAGGCAGGCGGAGCTGCTTCCAACCGCGGGCGCCGGGAGCGGCAAGATCTCTTGCATGCCGGCCATGTCGGCGTCGTCGGTGCCGGCGTACCCGGTGGTGTCCACCTCGGGCACCCCGCCGCCGTACGCGACGGCGTACGCCAC GCCGAGCTTCTCGCCGGCGCAGCTGT CGAGCCCATCCAACATCGGGAGGGCACTGCTGGTCGACCGGCGGTCGC ACGACGGCCGAGCGTTCGACGGCAGCATGGAGTTCATGGGGATGGCGGTCAGCAACGCCGTG TTCGACCTACCGGGCCTGTGAATCGATCGATCACGGGCCCCGTGTCT AGTGCTTTACTTACCCTCGCCTGTGTGCAGTAG TTGTAATGTTGTATGGCGTGATTTCTTCTCGGGAGGGCGGCCTGTTTTTGCCGTTTCGCCGTTTCGCCGCCCTCCAGTTTTATGATGTGTTTTGACAGTGCCTTTGTTAACTTGCTAGTGTTGTAAGAGTGCTTAAGTTCGATGTTGGTCGGATGGCAAAAGAGAACCATCGCGTTTGTGCAAACCACAGAGTTTTCT] [+] EMBL AU058371 [ AGCGGA CAGGCAGGCGGA CTGCTTCCAACCGCGGGCGCCGGGAGCGGCAAGATCTCTTGCATGCCGGCCATGTCGGCGTCGTCGGTGCCGGCGTACCCGGTGGTGTCCACCTCGGGCACCCCGCCGCCGTACGCGACGGCGTACGCCAC GCCGAGCTTCTCGCCGGCGCA NTGTCCGAGCCCATCCAACATCGGGAGGGCACTGCTGGTCGACCGGCGGTNNCAACGACGGCCGAGCGTTCGACGGCAGCATGGAGTTCATGGGGATGGCGGTCAGCAACGCCGTGTTTCGACCTACCGGG CTGTGAATCGATCGATTAAGGGC ] [+] EMBL AU058372 [ AGCGGA CAGGCAGGCGGA CTGCTTCCAACCGCGGGCGCCGGGAGCGGCAAGATCTCTTGCATGCCGGCCATGTCGGCGTCGTCGGTGCCGGCGTACCCGGTGGTGTCCACCTCGGGCACCCCGCCGCCGTACGCGACGGCGTACGCCACAGCCGAGCTTCTCGCCGGCGCA NTGTACGAGCCCATCCAACATCGGGAGGGCACTGCTGGTCGACCGGCGGT NC ACGACGGCCGANCGTTCGACGGCAGCATGGAGTTCATGGGGATGGCGGTCAGCAANGCCGTG TTCGACCTAACGGGCCTGTGAATCGATCGATCACAGGg ] [+] EMBL C74737 [ GCGGA CAGGCAGGCGGA CTGCTTCCAACCGCGGGCGCCGGGAGCGGCAAGATCTCTTGCATGCCGGCCATGTCGGCGTCGTCGGTGCCGGCGTACCCGGTGGTGTCCACCTCGGGCACCCCGCCGCCGTACGCGACGGCGTACGCCAC GCCGAGCTTCTCGCCGGCGCA NTGTCCGAGCCCATCCAACATCGGGAGGGCACTGCTGGTCGACCGGCGGT NC ACGACGGCCGAGCGTTCGACGGCAGCATGGAGTTCATGGGGATGGCGGTCAGCAACGCCGTG TTCGACCTACCGGGCCTGTGAATCGATCGATCACGGGCCCCGTGTCTAATTGCTTTACTTANCCTCGCCTGTGTGCAGTAGTTTGTAATGTTGTATGGCGTGATTTCTTCTCNGGAAGGC ] consensusID : consensus_8243#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence [CGGACAGGACAGGCGGACTGCTTCCAACCGCGGGCGCCGGGAGCGGCAAGATCTCTTGCATGCCGGCCATGTCGGCGTCGTCGGTGCCGGCGTACCCGGTGGTGTCCACCTCGGGCACCCCGCCGCCGTACGCGACGGGTAGCCACGCCGAGCTTCTCGCCGGCGCANTGTCGAGCCCATCCAACATCGGGAGGGCACTGCTGGTCGACCGGCGGTNCAACGACGGCCGAGCGTTCGACGGCAGCATGGAGTTCATGGGGATGGCGGTCACAACGCGTGTTCGANCTACCGGGCCTGTGAATCGATCGATCACNGGGCCCGTGTCTAGTGTTACTTACCCTCGCTGTGTNAGTAGTTGTATGTTGATGCGTATTCTTTCGGAGGCGGCTGTTTGCGTTCGCGTTGCGCCTCAGTTATATGTGTTGAATCTTTTAATN] [+] EMBL C74760 [CGGACAGGACAGGCGGACTGCTTCCAACCGCGGGCGCCGGGAGCGGCAAGATCTCTTGCATGCCGGCCATGTCGGCGTCGTCGGTGCCGGCGTACCCGGTGGTGTCCACCTCGGGCACCCCGCCGCCGTACGCGACGGGTAGCCACGCCGAGCTTCTCGCCGGCGCANTGTCGAGCCCATCCAACATCGGGAGGGCACTGCTGGTCGACCGGCGGTNCAACGACGGCCGAGCGTTCGACGGCAGCATGGAGTTCATGGGGATGGCGGTCACAACGCGTGTTCGANCTACCGGGCCTGTGAATCGATCGATCACNGGGCCCGTGTCTAGTGTTACTTACCCTCGCTGTGTNAGTAGTTGTATGTTGATGCGTATTCTTTCGGAGGCGGCTGTTTGCGTTCGCGTTGCGCCTCAGTTATATGTGTTGAATCTTTTAATN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8243#0 ACCACCACCACCTCCCCCGTCCTCCTCTCCTCCACCGCAACCGCAACCACGGCCAGCCAC 60 consensus_8243#1 ------------------------------------------------------------ consensus_8243#0 GGGCCAAGCGAGTCACGACTGGCACAACGAGGCAAAAACACCATTGCTACCCCCGAGGCG 120 consensus_8243#1 ------------------------------------------------------------ consensus_8243#0 TCCCTCTCAGCTAGCCCTGGCACCCGCACCACCTAGCGGCGGCGCCGTCGTGTTCGTGTC 180 consensus_8243#1 ------------------------------------------------------------ consensus_8243#0 GGCCAAGTCGTCAAGAAGCTAGCTAGTCATTGCCAGTGGGCGCATTGTGCTAGGGGATGG 240 consensus_8243#1 ------------------------------------------------------------ consensus_8243#0 CGAGAGGAGGAGGAGGAGGAGAGGAGGCGGCGGAGGAGGAGAGGGAGGTGAGCGAGGCGC 300 consensus_8243#1 ------------------------------------------------------------ consensus_8243#0 TGACGGCGGACTCGTCGGCCGACGAGGAGTGCCGCCGCGGGAGCAGCAGCTCCAGCGCAA 360 consensus_8243#1 ------------------------------------------------------------ consensus_8243#0 GCTCCGGGGACGCCTCCAGCGAGTCCTACTGCCCGCCCGACGAGTGGCAGAAGGTGGCCA 420 consensus_8243#1 ------------------------------------------------------------ consensus_8243#0 TCAAGACCTGCGTGTCGTCCGACCTCGTCGTCGTCTCGGCCGAGCCGGCCAAGGAGAAGA 480 consensus_8243#1 ------------------------------------------------------------ consensus_8243#0 AGCCGCCGCCGCCGCCGTCGTCGCCGCGTGTCGACGCCGCCCCGGCGGACAAGCACCACC 540 consensus_8243#1 ------------------------------------------------------------ consensus_8243#0 GGCCCTCAGAGATGGAGATGATGAAGGAGAGGTTCGCGAAGCTGCTGCTCGGCGAGGACA 600 consensus_8243#1 ------------------------------------------------------------ consensus_8243#0 TGTCCGGCGGCGGCAAGGGCGTCTGCACCGCGCTCGCCATCTCCAACGCCATCACCAACC 660 consensus_8243#1 ------------------------------------------------------------ consensus_8243#0 TCTGCGCGACGATATTTGGGCAGCTGTGGAGGCTGGAGCCGCTGCTGCCGGAGAAAAAGA 720 consensus_8243#1 ------------------------------------------------------------ consensus_8243#0 CGATGTGGCGGCGCGAGATGGACTGGCTGCTCTGCGTCAGCGACCACATCGTCGAGCTAG 780 consensus_8243#1 ------------------------------------------------------------ consensus_8243#0 TCCCCACATGGCAGACATTCCCCGACGGGAGTAAGCTTGAGATCATGACAAGCAGGCCAC 840 consensus_8243#1 ------------------------------------------------------------ consensus_8243#0 GGTCTGATCTCTACATCAATCTGCCCGCACTCCGAAAGCTAGACCACATGCTCCTCGAAA 900 consensus_8243#1 ------------------------------------------------------------ consensus_8243#0 TTCTGGAGAGCTTCAGGGACCCGGAATTCTGGTACGTCGACCAGGGGATTTGCCCGCCGG 960 consensus_8243#1 ------------------------------------------------------------ consensus_8243#0 ACCGCGACGGCAGCGCCCCCTTCATGCTAACGTTCCACCGCCGCGACGAGAAGTGGTGGC 1020 consensus_8243#1 ------------------------------------------------------------ consensus_8243#0 TGCCCGTGCCCCGCGTCCCTCCCGGCGGCGTCGGCGAGACCACGAGGAGGCAGCTCGAGC 1080 consensus_8243#1 ------------------------------------------------------------ consensus_8243#0 ACAAGCGCGACTGCGCCAGCCAGATCTTCAAGGCCGCCATGGCCATCAACAGCAACGCCC 1140 consensus_8243#1 ------------------------------------------------------------ consensus_8243#0 TCGCCGAAATGGACGTCCCCGACTCTTACCTCGACTCGTTACCCAAGAACGGGCGTGCGA 1200 consensus_8243#1 ------------------------------------------------------------ consensus_8243#0 CGCTGGGCGACATCATATACAGGTACATCACGTCGGACCAGTTCTCGCCGGACTGCCTGC 1260 consensus_8243#1 ------------------------------------------------------------ consensus_8243#0 TCGACTGCCTCGACCTGTCGTCGGAGTACCAGGCGCTGGAGATCGCCAACCGCGTCGAGG 1320 consensus_8243#1 ------------------------------------------------------------ consensus_8243#0 CCTCCATCTACGTGTGGCGCCGGAGGGGCACGTCGGGCGCCGCGAGCCGCGCCGGAAACA 1380 consensus_8243#1 ------------------------------------------------------------ consensus_8243#0 AGTCGTCATGGGGCATCGTCAAGGACATGATCATGGACACGGAGAAGAGAGACGACCTCC 1440 consensus_8243#1 ------------------------------------------------------------ consensus_8243#0 TCGCCGACCGCGCCGAGGGCCTCCTCATGTGCCTCAAGCAGAGGTTCCCCGGACTGACGC 1500 consensus_8243#1 ------------------------------------------------------------ consensus_8243#0 AGACCAGCCTGGACACGAGCAAGATTCAGTACAACAAGGATGTGGGGAAATCGATTCTGG 1560 consensus_8243#1 ------------------------------------------------------------ consensus_8243#0 AGAGCTACTCGAGGGTTCTGGAGAGCCTGGCGTCGAACATCATCGCGCGGATCGACGACC 1620 consensus_8243#1 ------------------------------------------------------------ consensus_8243#0 TGCTGTACGTCGACGAGCGGACAGG-CAGGCGGACTGCTTCCAACCGCGGGCGCCGGGAG 1679 consensus_8243#1 -----------------CGGACAGGACAGGCGGACTGCTTCCAACCGCGGGCGCCGGGAG 43 ******** ********************************** consensus_8243#0 CGGCAAGATCTCTTGCATGCCGGCCATGTCGGCGTCGTCGGTGCCGGCGTACCCGGTGGT 1739 consensus_8243#1 CGGCAAGATCTCTTGCATGCCGGCCATGTCGGCGTCGTCGGTGCCGGCGTACCCGGTGGT 103 ************************************************************ consensus_8243#0 GTCCACCTCGGGCACCCCGCCGCCGTACGCGACGGCGTACGCCACGCCGAGCTTCTCGCC 1799 consensus_8243#1 GTCCACCTCGGGCACCCCGCCGCCGTACGCGACGG-GTA-GCCACGCCGAGCTTCTCGCC 161 *********************************** *** ******************** consensus_8243#0 GGCGCANTGTCCGAGCCCATCCAACATCGGGAGGGCACTGCTGGTCGACCGGCGGTNCA- 1858 consensus_8243#1 GGCGCANTGTC-GAGCCCATCCAACATCGGGAGGGCACTGCTGGTCGACCGGCGGTNCAA 220 *********** *********************************************** consensus_8243#0 CGACGGCCGAGCGTTCGACGGCAGCATGGAGTTCATGGGGATGGCGGTCAGCAACGCCGT 1918 consensus_8243#1 CGACGGCCGAGCGTTCGACGGCAGCATGGAGTTCATGGGGATGGCGGTCA-CAACGC-GT 278 ************************************************** ****** ** consensus_8243#0 GTTCGACCTACCGGGCCTGTGAATCGATCGATCACGGGCCCCGTGTCTAGTGCTTTACTT 1978 consensus_8243#1 GTTCGANCTACCGGGCCTGTGAATCGATCGATCACNGGGCCCGTGTCTAGTG--TTACTT 336 ****** **************************** ** ************* ****** consensus_8243#0 ACCCTCGCCTGTGTGCAGTAGTTGTAATGTTGTATGGCGTGATTTCTTCTCGGGAGGGCG 2038 consensus_8243#1 ACCCTCGC-TGTGTN-AGTAGTTGTA-TGTTG----ATGCGTATTCTTTCGGAGGCGGCT 389 ******** ***** ********** ***** * * ***** * * *** consensus_8243#0 GCCTGTTTTTGCCGTTTCGCCGTT-TCGCCGCCCTCCAGTTTTATGATGTGTTTTGACAG 2097 consensus_8243#1 GTTTGCGTTCGC-GTTGCGCCTCAGTTATATGTGTTGAATCTTTTAATN----------- 437 * ** ** ** *** **** * * * * ** * ** consensus_8243#0 TGCCTTTGTTAACTTGCTAGTGTTGTAAGAGTGCTTAAGTTCGATGTTGGTCGGATGGCA 2157 consensus_8243#1 ------------------------------------------------------------ consensus_8243#0 AAAGAGAACCATCGCGTTTGTGCAAACCACAGAGTTTTCT 2197 consensus_8243#1 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||