These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8244#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1479 fasta sequence [CTGCCTCTCCCCAGCCACTACCCCTCCCCTCCCCTCTCCTCTCTTCCCCACGCAACCGGGGATAAAAAAAGGGGAGCTTGAACGGGACGAGGCATTCAGGCATGGATACTCTGCTGGGCTCCGGGAGATTCTTGGCGCGGCGGCCCCCGCTCGCGCTCGCCCCTCGCTGCTCGCGAGGATCCCCGGAGAAAGGCGGCGGCAGCGACAAAGGTGACACATCATCCACTGACTGGGACAAAGCTTGGTCTACATTTAAGAAGAAAGGGAAGAAGACCCTATTTTCGGAGTTCTCACCAAACAAGTATGTGAGCTGGAACCCACGACGCAGCGAGTATCCATTATCAGAAGAGGTTGATCCAATCAGAAGAACGGAGAGGTCTAACCTAATGTTGTGGACAAGTCCGAAATTTACCTTGGTAATGGCGATTGTCATCGTCTCGACATTGCTAATCTATACAATAGTTGTTCCACCCAAGTAACTGAAGAAGTGACAGGCATGAGTTGAACTGTAAGAGAAACATTCTACTTGCATGTTTGTACTGTACATTTGTTTGTACTAGTATTAGACAACTATAGCGTTTCTATTGGCCTGTTGCTTTAATTGCATGCAGATGGACCATGATAGTGCATCCTTCACTTCTCTTTGTTGGTTTTCTTCACTTTGTGTTTCAATTGGCTCCTCTCTAGAAAATCTTTTTGTTAAGGAACTCCTCACTAGAATTTTATCACAGCCCAGAATTATGGGGAGGGACTAAGTAGAATATTATGTTGATCAGTATTCAGTTAGAATATATAAGCCACGCTACTGATGTGTGTTAGTATCAGAAAAAATCTCAGTTACTGTGTGATCGTTGGATAGTAAGTAGTTGTAAAAATGTTGTATGAATCAATGGTGTGTAGTATTTATTGTTGGGGTTGCTTGGGCAAGTGGGCATGTGCAAAATGTCTAGTGCTGTATGTAATACATACTGATTCAGCCCATAAGAAGCACGTTTTTCATTACAGCCAATTTGAAGTCAAAAAAGCCAGTTCATTAGCTTCGTATAATAGTAATGCCTAGATAAACAGGAATCTTGCTTAGATGTAAAGCTATTTAATTAACCTTCCCGTCCACTGAATAATTAGCGTCTGTCGCTTATATTGGAGGCATAGAAAATAGTCTGTCAATATCTTATAGTTAAACGATTCGATGGAATGCGAATCTGAATAAACATGGTCAGGGCATCACATGTAATCTTGAAGACTTGGTCGTGACATCTTTATATTCAGCATCCGGGATTAAATCCGACGATGGATTTGTCATCTTTGTGTATAATAAAAAGGATTTTTTTTTCTTTTTTTATAATTGAACAATGCCCAAGTTTTATAGGTTGTGGCACTGTTTGTCCAGTGAATTCATTGTTCAGGGGCTCTGGATGGATTTTGTGTTGTCTGTACTGAACCTTCGGAGAATATTTTGTCCAGCGAATTCATTGTTTA] [+] EMBL AK071764 [CTGCCTCTCCCCAGCCACTACCCCTCCCCTCCCCTCTCCTCTCTTCCCCACGCAACCGGGGATAAAAAAAGGGGAGCTTGAACGGGACGAGGCATTCAGGCATGGATACTCTGCTGGGCTCCGGGAGATTCTTGGCGCGGCGGCCCCCGCTCGCGCTCGCCCCTCGCTGCTCGCGAGGATCCCCGGAGAAAGGCGGCGGCAGCGACAAAGGTGACACATCATCCACTGACTGGGACAAAGCTTGGTCTACATTTAAGAAGAAAGGGAAGAAGACCCTATTTTCGGAGTTCTCACCAAACAAGTATGTGAGCTGGAACCCACGACGCAGCGAGTATCCATTATCAGAAGAGGTTGATCCAATCAGAAGAACGGAGAGGTCTAACCTAATGTTGTGGACAAGTCCGAAATTTACCTTGGTAATGGCGATTGTCATCGTCTCGACATTGCTAATCTATACAATAGTTGTTCCACCCAAGTAACTGAAGAAGTGACAGGCATGAGTTGAACTGTAAGAGAAACATTCTACTTGCATGTTTGTACTGTACATTTGTTTGTACTAGTATTAGACAACTATAGCGTTTCTATTGGCCTGTTGCTTTAATTGCATGCAGATGGACCATGATAGTGCATCCTTCACTTCTCTTTGTTGGTTTTCTTCACTTTGTGTTTCAATTGGCTCCTCTCTAGAAAATCTTTTTGTTAAGGAACTCCTCACTAGAATTTTATCACAGCCCAGAATTATGGGGAGGGACTAAGTAGAATATTATGTTGATCAGTATTCAGTTAGAATATATAAGCCACGCTACTGATGTGTGTTAGTATCAGAAAAAATCTCAGTTACTGTGTGATCGTTGGATAGTAAGTAGTTGTAAAAATGTTGTATGAATCAATGGTGTGTAGTATTTATTGTTGGGGTTGCTTGGGCAAGTGGGCATGTGCAAAATGTCTAGTGCTGTATGTAATACATACTGATTCAGCCCATAAGAAGCACGTTTTTCATTACAGCCAATTTGAAGTCAAAAAAGCCAGTTCATTAGCTTCGTATAATAGTAATGCCTAGATAAACAGGAATCTTGCTTAGATGTAAAGCTATTTAATTAACCTTCCCGTCCACTGAATAATTAGCGTCTGTCGCTTATATTGGAGGCATAGAAAATAGTCTGTCAATATCTTATAGTTAAACGATTCGATGGAATGCGAATCTGAATAAACATGGTCAGGGCATCACATGTAATCTTGAAGACTTGGTCGTGACATCTTTATATTCAGCATCCGGGATTAAATCCGACGATGGATTTGTCATCTTTGTGTATAATAAAAAGGATTTTTTTTTCTTTTTTTATAATTGAACAATGCCCAAGTTTTATAGGTTGTGGCACTGTTTGTCCAGTGAATTCATTGTTCAGGGGCTCTGGATGGATTTTGTGTTGTCTGTACTGAACCTTCGGAGAATATTTTGTCCAGCGAATTCATTGTTTA] [+] EMBL CF302787 [ GCTGGGCTCCGGGAGATTCTTGGCGCGGCGGCCCCCGCTCGCGCTCGCCCCTCGCTGCTCGCGAGGATCCCCGGAGAAAGGCGGCGGCAGCGACAAAGGTGACACATCATCCACTGACTGGGACAAAGCTTGGTCTACATTTATTAAGAAAGGGAAGAAGTCCCTATTTTCGGAGTTCTCACCAATC TGTATGTGAGCTGGAACCCACGACGCAGCGAGTATCCATTATCAGAAGAGGTTGATCCAATCAGAAGAACGGAGAGGTCTAACCTAATGTTGTGGACAAGTCCGAAATTTACCTTGGTAATGGCGATTGTCATCGTCTCGACATTGCTAATCTATACAATAGTTGTTCCACCCAAGTAACTGAAGAAGTGACAGGCATGAGTTGAACTGTAAGAGAAACATTCTACTTGCA ] [+] EMBL CB681698 [ AGAGGCCTAACCTAATGTTGTGGACAAGTCCGAAATTTACCTTGGTAATGGCGATTGTCATCGTCTCGACATTGCTAATCTATACAATAGTTGTTCCACCCAAGTAACTGAAGAAGTGACAGGCATGAGTTGAACTGTAAGAGAAACATTCTACTTGCATGTTTGTACTGTACATTTGTTTGTACTAGTA ] consensusID : consensus_8244#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence [GTTGATCCAATCAGAAGAACTGAGAGGTCTAACCTAATGTTGGGACAAGTCCGAAATTTACCTTGGTAATGGCGATTGTAATCGTCTCGACATTGCTAATCTATACAATAGTTGTTCCACCCAAGTAACTGAAGAAGTGACAGGCATGAGTTGAACTGTAAGAGAAACATTCTACTTGCATGTTTGTACTGTACATTTGTTTGTACTAGTATTAGACAACTATAGCGTTTCTATTGGCCTGTTGCTTTAATTGCATGCAGATGTACCATGATAGTGCATCCTTCACTTCTCTTTGTTGGTTTTCTTCACTTTGTGTTTCAATTGGCTCCTCTCTAGAAAATCTTTTTGTTAAGGAACTCCTCACTAGAATTTTATCACAGCCCAGAATTATGGGGAGGGACTAAGTAGAATATTATGTTGATCAGTATTCAGTTAGAATATATAAGCCACGCTACTGATGTGGGTTAGTATCAGAAAAAATCTCAGTTACTGTGTGATCGTTGGATAGTAAGTAGTTGTAAAAATGTTGTATGAATCAATGGTGTGTAGTATTTATTGTTGGGGTTGCTTGGGCAAGTGGGCATGTGCAAAATGTCTAGTGCTGTATGTAATACATACTGATTCAGCCCATAAGGAGCACGTTTTTCATTAAAAAAAAAAAA] [-] EMBL CA762281 [GTTGATCCAATCAGAAGAACTGAGAGGTCTAACCTAATGTTGGGACAAGTCCGAAATTTACCTTGGTAATGGCGATTGTAATCGTCTCGACATTGCTAATCTATACAATAGTTGTTCCACCCAAGTAACTGAAGAAGTGACAGGCATGAGTTGAACTGTAAGAGAAACATTCTACTTGCATGTTTGTACTGTACATTTGTTTGTACTAGTATTAGACAACTATAGCGTTTCTATTGGCCTGTTGCTTTAATTGCATGCAGATGTACCATGATAGTGCATCCTTCACTTCTCTTTGTTGGTTTTCTTCACTTTGTGTTTCAATTGGCTCCTCTCTAGAAAATCTTTTTGTTAAGGAACTCCTCACTAGAATTTTATCACAGCCCAGAATTATGGGGAGGGACTAAGTAGAATATTATGTTGATCAGTATTCAGTTAGAATATATAAGCCACGCTACTGATGTGGGTTAGTATCAGAAAAAATCTCAGTTACTGTGTGATCGTTGGATAGTAAGTAGTTGTAAAAATGTTGTATGAATCAATGGTGTGTAGTATTTATTGTTGGGGTTGCTTGGGCAAGTGGGCATGTGCAAAATGTCTAGTGCTGTATGTAATACATACTGATTCAGCCCATAAGGAGCACGTTTTTCATTAAAAAAAAAAAA] consensusID : consensus_8244#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence [AGACAAGGGGGTTGTAAAAATGTTGTATGAATCAATGGTGTGTAGTATTTATTGTTGGGGTTGCTTGGGCAAGTGGGCATGTGCAAAATGTCTAGTGCTGTATGTAATACATACTGATTCAGCCCATAAGAAGCACGTTTTTCATTACAGCCAATTTGAAGTCAAAAAAGCCAGTTCATTAGCTTCGTATAATAGTAATGCCTAGATAAACAGGAATCTTGCTTAGATGTAAAGCTATTTAATTAACCTTCCCGTCCACTGAATAATTAGCGTCTGTCGCTTATATTGAAGGCATAGAAAAGAGTCTGTCAATATCTTATAGTTAAACGATTCGATGGAATGCGAATCTGGATAAACATGGTCAGGGCATCACATGTAATCTTGAAGACTTGGTCGTGACATCTTTATATTCAGCATCCGGGATTAAATCCGACGATGGATTTGTCATCTTTGTGTATAATAAAAAGGATTTTTTTTCTTTTTTTATAATTGAACAATGCCCAAGTTTTATAGGTTGTGGCACTGTTTGTCCAGTGAATTCATTGTTCAGGGGCTCTGGATGGATTTTGTGTTGTCTGTACTGAACCTTCGGAGAATATTTTGTCCAGCGAATTCATTGTTTACATTTTCAGCAAAAAAA] [-] EMBL CA761785 [AGACAAGGGGGTTGTAAAAATGTTGTATGAATCAATGGTGTGTAGTATTTATTGTTGGGGTTGCTTGGGCAAGTGGGCATGTGCAAAATGTCTAGTGCTGTATGTAATACATACTGATTCAGCCCATAAGAAGCACGTTTTTCATTACAGCCAATTTGAAGTCAAAAAAGCCAGTTCATTAGCTTCGTATAATAGTAATGCCTAGATAAACAGGAATCTTGCTTAGATGTAAAGCTATTTAATTAACCTTCCCGTCCACTGAATAATTAGCGTCTGTCGCTTATATTGAAGGCATAGAAAAGAGTCTGTCAATATCTTATAGTTAAACGATTCGATGGAATGCGAATCTGGATAAACATGGTCAGGGCATCACATGTAATCTTGAAGACTTGGTCGTGACATCTTTATATTCAGCATCCGGGATTAAATCCGACGATGGATTTGTCATCTTTGTGTATAATAAAAAGGATTTTTTTTCTTTTTTTATAATTGAACAATGCCCAAGTTTTATAGGTTGTGGCACTGTTTGTCCAGTGAATTCATTGTTCAGGGGCTCTGGATGGATTTTGTGTTGTCTGTACTGAACCTTCGGAGAATATTTTGTCCAGCGAATTCATTGTTTACATTTTCAGCAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8244#0 CTGCCTCTCCCCAGCCACTACCCCTCCCCTCCCCTCTCCTCTCTTCCCCACGCAACCGGG 60 consensus_8244#1 ------------------------------------------------------------ consensus_8244#2 ------------------------------------------------------------ consensus_8244#0 GATAAAAAAAGGGGAGCTTGAACGGGACGAGGCATTCAGGCATGGATACTCTGCTGGGCT 120 consensus_8244#1 ------------------------------------------------------------ consensus_8244#2 ------------------------------------------------------------ consensus_8244#0 CCGGGAGATTCTTGGCGCGGCGGCCCCCGCTCGCGCTCGCCCCTCGCTGCTCGCGAGGAT 180 consensus_8244#1 ------------------------------------------------------------ consensus_8244#2 ------------------------------------------------------------ consensus_8244#0 CCCCGGAGAAAGGCGGCGGCAGCGACAAAGGTGACACATCATCCACTGACTGGGACAAAG 240 consensus_8244#1 ------------------------------------------------------------ consensus_8244#2 ------------------------------------------------------------ consensus_8244#0 CTTGGTCTACATTTAAGAAGAAAGGGAAGAAGACCCTATTTTCGGAGTTCTCACCAAACA 300 consensus_8244#1 ------------------------------------------------------------ consensus_8244#2 ------------------------------------------------------------ consensus_8244#0 AGTATGTGAGCTGGAACCCACGACGCAGCGAGTATCCATTATCAGAAGAGGTTGATCCAA 360 consensus_8244#1 --------------------------------------------------GTTGATCCAA 10 consensus_8244#2 -------------------------------------------------AGACAAGGGGG 11 * * consensus_8244#0 TCAGAAGAACGGAGAGGTCTAACCTAATGTTGTGGACAAGTCCGAAATTTACCTTGGTAA 420 consensus_8244#1 TCAGAAGAACTGAGAGGTCTAACCTAATGTTG-GGACAAGTCCGAAATTTACCTTGGTAA 69 consensus_8244#2 TTGTAAAAAT---GTTGTATGAATCAATGGTGTGTA-GTATTTATTGTTGGGGTTGCTTG 67 * ** ** * ** * * **** ** * * * ** *** * consensus_8244#0 TGGCGATTGTCATCGTCTCGACAT-TGCTAATCTATACAATAGTTGTTCCACCCAAGTAA 479 consensus_8244#1 TGGCGATTGTAATCGTCTCGACAT-TGCTAATCTATACAATAGTTGTTCCACCCAAGTAA 128 consensus_8244#2 GGCAAGTGGGCATGTGCAAAATGTCTAGTGCTGTATGTAATACATACTG-ATTCAGCCCA 126 * * * ** * * * * * * *** **** * * * ** * consensus_8244#0 CTGAAGAAGTGACAGGCATGA-GTTGAACTGTAAGAGAAACATTCTACTTGCATGTTTGT 538 consensus_8244#1 CTGAAGAAGTGACAGGCATGA-GTTGAACTGTAAGAGAAACATTCTACTTGCATGTTTGT 187 consensus_8244#2 TAAGAAGCACGTTTTTCATTACAGCCAATTTGAAGTCAAAAAAGCCAGTT---CATTAGC 183 * * *** * ** * *** *** * * * ** ** * consensus_8244#0 ACTGTACATTTGTTTGTACTAGTATTAGACAACTATAGCGTTTCTATTGGCCTGTTGCTT 598 consensus_8244#1 ACTGTACATTTGTTTGTACTAGTATTAGACAACTATAGCGTTTCTATTGGCCTGTTGCTT 247 consensus_8244#2 TTCGTATAATAGTAATGCCTAG--ATAAACAGGAATCTTGCTTAGAT-GTAAAGCTATTT 240 *** * * ** **** ** *** ** * ** ** * * * ** consensus_8244#0 TAATTGCATGCAGATGGACCATGATAGT--GCATCCTTCACTTCTCTTTGTTGGTTTTCT 656 consensus_8244#1 TAATTGCATGCAGATGTACCATGATAGT--GCATCCTTCACTTCTCTTTGTTGGTTTTCT 305 consensus_8244#2 AATTAACCTTCCCGTCCACTG-AATAATTAGCGTCTGTCGCTTATATT-GAAGGCATAGA 298 * * * * * * ** *** * ** ** ** *** * ** * ** * consensus_8244#0 TCACTTTGTGTTTCAATTGGCTCCTCTCTAGAAAATCTTTTTGTTAAGGAACTCCTCACT 716 consensus_8244#1 TCACTTTGTGTTTCAATTGGCTCCTCTCTAGAAAATCTTTTTGTTAAGGAACTCCTCACT 365 consensus_8244#2 AAAGAGTCTGTC---AATATCTTATAGTTAAACGAT-TCGATGGAATGCGAATCTGGATA 354 * * *** * * ** * ** * ** * ** * * * ** * consensus_8244#0 AGAATT-TTATCACAGCCCAGAATTATGGGGAGGGACTAAGTAGAATATTATGTTGATCA 775 consensus_8244#1 AGAATT-TTATCACAGCCCAGAATTATGGGGAGGGACTAAGTAGAATATTATGTTGATCA 424 consensus_8244#2 AACATGGTCAGGGCATCACATG-TAATCTTGAAGACTTGGTCGTGACATCTTTATATTCA 413 * ** * * ** * ** * ** ** * * * ** * * *** consensus_8244#0 GTATTCAGTTAGAATATATAAGCCACGCTACTGATGTGTGTTAGTATCAGAAAAAATCTC 835 consensus_8244#1 GTATTCAGTTAGAATATATAAGCCACGCTACTGATGTGGGTTAGTATCAGAAAAAATCTC 484 consensus_8244#2 GCATCCGGGATTAAATCCGACGATGGATTTGTCATCTTTGTGTATAATAAAAAGGATTTT 473 * ** * * ** * * * * ** * ** ** * *** ** * consensus_8244#0 AGTTACTGTGTGATCGTTGGATAGTAAGTAGTTGTAAAAATGTTGTATGAATCAATGGTG 895 consensus_8244#1 AGTTACTGTGTGATCGTTGGATAGTAAGTAGTTGTAAAAATGTTGTATGAATCAATGGTG 544 consensus_8244#2 TTTTCTTTTTTTATAATTGAACAATGCCCAAGTTTTATAG-GTTGTG-GCACTGTTTGTC 531 ** * * * ** *** * * * * * * * * ***** * * * ** consensus_8244#0 TGTAGTATTTATTGTTGGGGTTGCTTGGGCAAGTGGGCATGTGCAAAATGTCTAGTGCTG 955 consensus_8244#1 TGTAGTATTTATTGTTGGGGTTGCTTGGGCAAGTGGGCATGTGCAAAATGTCTAGTGCTG 604 consensus_8244#2 CAGTGAATTCATTGTTCAGGGGCTCTGGATGGAT---TTTGTGTTGTCTGTACTGAACC- 587 * *** ****** ** *** * **** *** * * consensus_8244#0 TATGTAATACATACTGATTCAGCCCATAAGAAGCACGT-TTTTCATTACAGCCAATTTGA 1014 consensus_8244#1 TATGTAATACATACTGATTCAGCCCATAAGGAGCACGT-TTTTCATTAAAAAAAAAAAA- 662 consensus_8244#2 TTCGGAGAATATTTTG-TCCAGCGAATTCATTGTTTACATTTTCAGCAAAAAAA------ 640 * * * * ** ** * **** ** * ****** * * * consensus_8244#0 AGTCAAAAAAGCCAGTTCATTAGCTTCGTATAATAGTAATGCCTAGATAAACAGGAATCT 1074 consensus_8244#1 ------------------------------------------------------------ consensus_8244#2 ------------------------------------------------------------ consensus_8244#0 TGCTTAGATGTAAAGCTATTTAATTAACCTTCCCGTCCACTGAATAATTAGCGTCTGTCG 1134 consensus_8244#1 ------------------------------------------------------------ consensus_8244#2 ------------------------------------------------------------ consensus_8244#0 CTTATATTGGAGGCATAGAAAATAGTCTGTCAATATCTTATAGTTAAACGATTCGATGGA 1194 consensus_8244#1 ------------------------------------------------------------ consensus_8244#2 ------------------------------------------------------------ consensus_8244#0 ATGCGAATCTGAATAAACATGGTCAGGGCATCACATGTAATCTTGAAGACTTGGTCGTGA 1254 consensus_8244#1 ------------------------------------------------------------ consensus_8244#2 ------------------------------------------------------------ consensus_8244#0 CATCTTTATATTCAGCATCCGGGATTAAATCCGACGATGGATTTGTCATCTTTGTGTATA 1314 consensus_8244#1 ------------------------------------------------------------ consensus_8244#2 ------------------------------------------------------------ consensus_8244#0 ATAAAAAGGATTTTTTTTTCTTTTTTTATAATTGAACAATGCCCAAGTTTTATAGGTTGT 1374 consensus_8244#1 ------------------------------------------------------------ consensus_8244#2 ------------------------------------------------------------ consensus_8244#0 GGCACTGTTTGTCCAGTGAATTCATTGTTCAGGGGCTCTGGATGGATTTTGTGTTGTCTG 1434 consensus_8244#1 ------------------------------------------------------------ consensus_8244#2 ------------------------------------------------------------ consensus_8244#0 TACTGAACCTTCGGAGAATATTTTGTCCAGCGAATTCATTGTTTA 1479 consensus_8244#1 --------------------------------------------- consensus_8244#2 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||