cluster # 8250

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Oryza sativa
cluster # 8250 cluster # 8250 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8250#0 length = 899 sequences # 4

consensus_8250#1 length = 636 sequences # 1

consensusID : consensus_8250#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 899
fasta sequence

                              [AATNAGGAAGGAGGAGCATATTGAGAAGACACTCAATGAGGAGGCCAACATTGAGGATGTTGATACAGATGATGAGTTGAATGAAGCAGAGGAGTACGAGTCATGGAAGAATCGAGAAATAGCTAGAATCAAGAGGGACAGGGAAGAAAGAGATGCAAGGTTGAAGGAGAAGGAGGAGATTGAGAAGGTGCGGAATATGACCGAGGAGGAGCGGCGAGAATGGGAGCGAAAGAATCCTAAGCCACTTCGTGAGAACAAGCAGAAGTGGAAGTTTATGCAGAAGTATTACCACAAGGGTGCCTTCTTCCAGGAAGGTGCTGATGATGTTATCCAATCAGCTGGTAAAGATGATATTTACGCTCGTGATTTCTCTGCACCAACTGGTGAAGATAAGATGGACAAGAGCATCTTGCCCAAGGTTATGCAAGTTAAGCACTTCGGACGGAGTGGCAGAACGAAGTGGACACATCTTGTTAATGAGGATACTACAGATTGGAATGCACCGTGGGCTACAAATGGGCCCTTGCGAGCAAAGTACAATGCAAAAATGGCAGGCATGAATGCTCCTATTGCCAAACCAAAGGGAAGTAAGAAGATGAAAGACTGGGATACAAAACAGGATGATTAAATGAATACTAGATGAAGTCTGGTACTGCTCTCTTACTTTCATAGGGACAGACTAATGGTAGCTGCAAAACATGTTTATGCAGATAGTTTGTTTCTCTTCTTTTTGCTGCATAAGACATGATTCTACCGTGCCATCAACTGTCTTACAGTTTACATCTGCTACCAAAATTTCTGCAAAGTATGTAAACGATCGATTGGTAGCCGCTTGTCATGTACTGTCCTGTTATGCTTAATTAGAGAAGAATTGTGTAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CA766741             [AATNAGGAAGGAGGAGCATATTGAGAAGACACTCAATGAGGAGGCCAACATTGAGGATGTTGATACAGATGATGAGTTGAATGAAGCAGAGGAGTACGAGTCATGGAAGAATCGAGAAATAGCTAGAATCAAGAGGGACAGGGAAGAAAGAGATGCAAGGTTGAAGGAGAAGGAGGAGATTGAGAAGGTGCGGAACATGACCGAGGAGGAGCGGCGAGAATGGGAGCGAAAGAATCCTAAGCCACTTCGTGAGAACAAGCAGAAGTGGAAGCTTATGCAGAAGTATTACCACAAGGGTGCCTTCTTCCAGGAAGGTGCTGATGATGTTATCCAATCAGCTGGTAAAGATGATATTTACGCTCGTGATTTCTCTGCACCAACTGGTGAAGATAAGATGGACAAGAGCATCTTGCCCAAGGTTATGCAAGTTAAGCACTTCGGACGGAGTGGCAGAACGAAGTGGACACATCTTGTTAATGAGGATACTACAGATTGGAATGCACCGTGGGCTACAAATGGGCCCTTGCGAGCAAAGTACAATGCAAAAATGGCAGGCATGAATGCTCCTATTGCCAAACCAAAGGGAAGTAAGAAGATGAAAGACTGGGATACAAAACAGGATGATTAAATGAATACTAGATGAAGTCTGGTACTGCTCTCTTACTTTCATAGGGACAGACTAATGGTAGCTGCAAAACATGTTTATGCAGATAGGTTGGTTCTCTTCTTTTTGCTGCATAANGCATGATTCTACCGTGCCATCAACTGTCTTA                                                                                                                              ]
[+] EMBL C72967               [                       AGAAGACACTCAATGAGGAGGCCAACATTGAGGATGTTGATACAGATGATGAGTTGAATGAAGCAGAGGAGTATGAGTCATGGAAGAATCGAGAAATAGCTAGAATCAAGAGGGACAGGGAAGAAAGAGATGCAAGGTTGAAGGAGAAGGAGGAGATTGAGAANGTGCGGAATATGACCGANGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU101209             [                                                                                                                                                                                               GGAATATGACCGAGGAGGACCGCCGAGATTGGGNNCGAAAGAATCCTAAGCC CTNCGTGAGAACAANCAGAAGTGGAAGTTTATGCAGAAGTATTACCACAAGGGTCCCTTCTTCCGGGAAGGTGCTGATGATGTTATCCAATCAGCTGGTAAAGATGATATTTATGCTCGTGATTTCTCTGCACCAACTGGTGAAGATAAGATGGACAAAAGCATCTTGCCCAAGGTTATGCAAGTTAAGCACTTCGGACGGAGTGGCAGAACGAAGTGGACACATCTTGTTAATGAGGATACTACAGATTGGAATGCACCGTGGGCTACAAATGGGCCCTTGCGAGCAAAGTACAATGCAAAAATGGCAGGCATGAATGCTCCTATTGCCAAACCAAAGGGAAGTAAGAAGATGAAAGACTGGGACACAAAACAGGATGATTAAATGAATACTAGATGAAGTCTGGTACTGCTCTCTTACTTTCATAGGGACAGACTAATGGTAGCTGCAAAACATGTTTATGCAGATAGTTTGTTTCTCTTCTTTTTGCTGCATAAGACATGCTTCTACCGTGCCATCAACTGTCTTACAGTTTACATCTGCTACCAAAATTTCTGCAAAGTATGTAAACGATCGATTGGTAGCCGCTTGTCATGTACTGTCCTGTTATGCTTAATTAGAGAAGAATTGTGTAAAAA                 ]
[-] EMBL CA762377             [                                                                                                                                                                                                             GAGGAGCGGCGAGAATGGGAGCGAAAGAATCTTAAGCCACTTCGTGAGANCAAGCAGAAGTGGAAGTTTATGCAGAAGTATTACCACAAGGGTGCCTTCTTCCAGGAAGGTGCTGATGATGTTATCCAATCAGCTGGTAAAGATGATATTTACGCTCGTGATTTCTCTGCACCAACTGGTGAAGATAAGATGGACAAGAGCATCTTGCCCAAGGTTATGCAAGTTAAGCACTTCGGACGGAGTGGCAGAACGAAGTGGACACATCTTGTTAATGAGGATACTACAGATTGGAATGCCCCGTGGGCTACAAATGGGCCCTTGCGAGCAAAGTTCAATGCAAAAATGGCAGGCATGAATGCTCCTATTGCCAAACCAAAGGGAAGTAAGAAGATGAAAGACTGGGATTCAAAACAGGATGATTAAATGAATACTAGATGAAGTCTGGTACTGCTCTCTTACTTTCATAGGGACAGACTAATGGTAGCTGCAAAACATGTTTATGCAGATAGTTTGTTTCTCTTCTTTTTGCTGCATAAGACATGATTTTACCGTGCCATCAACTGTCTTACAGTTTACATTTGCTACCAAAATTTTTGCAAAGTATGTAAACGATCGATTGGTAGCCGCTTGTCATGTACTGTCCTGTTATGCTTAATTAGAGAAGAATTGTGTAAAAAAAAAAAAAAAAAAAAAA]




>consensus_8250#0
AATNAGGAAGGAGGAGCATATTGAGAAGACACTCAATGAGGAGGCCAACATTGAGGATGT
TGATACAGATGATGAGTTGAATGAAGCAGAGGAGTACGAGTCATGGAAGAATCGAGAAAT
AGCTAGAATCAAGAGGGACAGGGAAGAAAGAGATGCAAGGTTGAAGGAGAAGGAGGAGAT
TGAGAAGGTGCGGAATATGACCGAGGAGGAGCGGCGAGAATGGGAGCGAAAGAATCCTAA
GCCACTTCGTGAGAACAAGCAGAAGTGGAAGTTTATGCAGAAGTATTACCACAAGGGTGC
CTTCTTCCAGGAAGGTGCTGATGATGTTATCCAATCAGCTGGTAAAGATGATATTTACGC
TCGTGATTTCTCTGCACCAACTGGTGAAGATAAGATGGACAAGAGCATCTTGCCCAAGGT
TATGCAAGTTAAGCACTTCGGACGGAGTGGCAGAACGAAGTGGACACATCTTGTTAATGA
GGATACTACAGATTGGAATGCACCGTGGGCTACAAATGGGCCCTTGCGAGCAAAGTACAA
TGCAAAAATGGCAGGCATGAATGCTCCTATTGCCAAACCAAAGGGAAGTAAGAAGATGAA
AGACTGGGATACAAAACAGGATGATTAAATGAATACTAGATGAAGTCTGGTACTGCTCTC
TTACTTTCATAGGGACAGACTAATGGTAGCTGCAAAACATGTTTATGCAGATAGTTTGTT
TCTCTTCTTTTTGCTGCATAAGACATGATTCTACCGTGCCATCAACTGTCTTACAGTTTA
CATCTGCTACCAAAATTTCTGCAAAGTATGTAAACGATCGATTGGTAGCCGCTTGTCATG
TACTGTCCTGTTATGCTTAATTAGAGAAGAATTGTGTAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_8250#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 636
fasta sequence

                              [TACTTTCATAGGGACAGACTAATGGTAGCTGCAAAACATGTTTATGCAGATAGTTTGTTTCTCTTCTTTTTGCTGCATAAGACATGCTTCTACCGTGCCATCAACTGTCTTACAGTTTACATCTGCTACCAAAATTTCTGCAAAGTATGTAAACGATCGATTGGTAGCCGCTTGTCATGTACTGTCCTGTTATGCTTAATTAGAGAAGAATTGTGTATATGTTTGTTTCTGTACTTTTGACATATTGCTATGCTTAGAACCTGTCACTGCTTCAGCTTCTGGAGATCTGCACTACAAGTGTTTATGACACTCATTTTACCTTATAGTGCCAACCCACCCTTATCGATCATCATTACACTGATGGGCATTTCATTATGTTGAGATGCCAACACTCAGTGATGTATGATTGTTGGGTGGTCAGTGCGTAGCCATGTTTCCTTGTGAGCATGTGTTTACATGCATGCGTTTTTTGAGTTAGCAAGGTAGTTTGCAAGTGGGCTTTTAACTCAAGGAAAATGCTCGGGTGATTTTATATCATGGAATGCAGTAATGCACATCTTATTTTATTTAATCTCATTTTTCTAGTGATCAGATTGTTTGCATATACAGTTATGCAAGGTAATACAATTTTAATGT]

[+] EMBL AK060301             [TACTTTCATAGGGACAGACTAATGGTAGCTGCAAAACATGTTTATGCAGATAGTTTGTTTCTCTTCTTTTTGCTGCATAAGACATGCTTCTACCGTGCCATCAACTGTCTTACAGTTTACATCTGCTACCAAAATTTCTGCAAAGTATGTAAACGATCGATTGGTAGCCGCTTGTCATGTACTGTCCTGTTATGCTTAATTAGAGAAGAATTGTGTATATGTTTGTTTCTGTACTTTTGACATATTGCTATGCTTAGAACCTGTCACTGCTTCAGCTTCTGGAGATCTGCACTACAAGTGTTTATGACACTCATTTTACCTTATAGTGCCAACCCACCCTTATCGATCATCATTACACTGATGGGCATTTCATTATGTTGAGATGCCAACACTCAGTGATGTATGATTGTTGGGTGGTCAGTGCGTAGCCATGTTTCCTTGTGAGCATGTGTTTACATGCATGCGTTTTTTGAGTTAGCAAGGTAGTTTGCAAGTGGGCTTTTAACTCAAGGAAAATGCTCGGGTGATTTTATATCATGGAATGCAGTAATGCACATCTTATTTTATTTAATCTCATTTTTCTAGTGATCAGATTGTTTGCATATACAGTTATGCAAGGTAATACAATTTTAATGT]




>consensus_8250#1
TACTTTCATAGGGACAGACTAATGGTAGCTGCAAAACATGTTTATGCAGATAGTTTGTTT
CTCTTCTTTTTGCTGCATAAGACATGCTTCTACCGTGCCATCAACTGTCTTACAGTTTAC
ATCTGCTACCAAAATTTCTGCAAAGTATGTAAACGATCGATTGGTAGCCGCTTGTCATGT
ACTGTCCTGTTATGCTTAATTAGAGAAGAATTGTGTATATGTTTGTTTCTGTACTTTTGA
CATATTGCTATGCTTAGAACCTGTCACTGCTTCAGCTTCTGGAGATCTGCACTACAAGTG
TTTATGACACTCATTTTACCTTATAGTGCCAACCCACCCTTATCGATCATCATTACACTG
ATGGGCATTTCATTATGTTGAGATGCCAACACTCAGTGATGTATGATTGTTGGGTGGTCA
GTGCGTAGCCATGTTTCCTTGTGAGCATGTGTTTACATGCATGCGTTTTTTGAGTTAGCA
AGGTAGTTTGCAAGTGGGCTTTTAACTCAAGGAAAATGCTCGGGTGATTTTATATCATGG
AATGCAGTAATGCACATCTTATTTTATTTAATCTCATTTTTCTAGTGATCAGATTGTTTG
CATATACAGTTATGCAAGGTAATACAATTTTAATGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8250#0      AATNAGGAAGGAGGAGCATATTGAGAAGACACTCAATGAGGAGGCCAACATTGAGGATGT 60
consensus_8250#1      ------------------------------------------------------------
                                                                                  

consensus_8250#0      TGATACAGATGATGAGTTGAATGAAGCAGAGGAGTACGAGTCATGGAAGAATCGAGAAAT 120
consensus_8250#1      ------------------------------------------------------------
                                                                                  

consensus_8250#0      AGCTAGAATCAAGAGGGACAGGGAAGAAAGAGATGCAAGGTTGAAGGAGAAGGAGGAGAT 180
consensus_8250#1      ------------------------------------------------------------
                                                                                  

consensus_8250#0      TGAGAAGGTGCGGAATATGACCGAGGAGGAGCGGCGAGAATGGGAGCGAAAGAATCCTAA 240
consensus_8250#1      --------------------------------------------------TACTTTCATA 10
                                                                            * *  *

consensus_8250#0      GCCACTTCGTGAGAACAAGCAGAAGTGGAAGTTTATGCAGAAGTATTACCACAAGGGTGC 300
consensus_8250#1      GGGACAGACTAATGGTA-GCTGCAAAACATGTTTATGCAGATAGTTTGTTTCTC---TTC 66
                      *  **    * *    * ** * *    * ***********    **    *     * *

consensus_8250#0      CTTCTTCCAGGAAGGTGCTGATGATGTTATCCAATCAGCTGGTAAAGATGATATTTACGC 360
consensus_8250#1      TTTTTGCTGCATAAGACATGCTTCTACCGTGCCATCAACTGTCTTACAGTTTACATCTGC 126
                       ** * *     * *   ** *  *    * * **** ***    * *   **  *  **

consensus_8250#0      TCGTGATTTCTCTGCACCAACTGGTGAAGATAAGATGGACAAGAGCATCTTGCCCAAGGT 420
consensus_8250#1      TACCAAAATTTCTGCAAAGTATGTAAACGATC-GATTGGTAGCCGCTTGTCATGTACTGT 185
                      *    *  * ******     **   * ***  *** *  *   ** * *     *  **

consensus_8250#0      TATGCAAGTTAAGCACTTCGGACGGAGTGGCAGAACGAAGTGGACACATCTTGTTAATGA 480
consensus_8250#1      CCTGTTA--TGCTTAATTAGAGAAGAATTGTGTATATGTTTGTTTCTGTACTTTTGAC-A 242
                        **  *  *    * ** *    ** * *   *      **      *  * ** *  *

consensus_8250#0      GGATACTACAGATTGGAATGCACCGTGGGCTACAAATGGGCCCTTGCGAGCAA-AGTACA 539
consensus_8250#1      TATTGCTAT-GCTTAGAACCTGTCACTGCTT-----CAGCTTCTGGAGATCTGCACTACA 296
                         * ***  * ** ***     *   *  *       *   ** * ** *   * ****

consensus_8250#0      ATGCAAAAATGGCAGGCATGAATGCTCCTATTGCCAAACCAAAGGGAAGTAAGAAGATGA 599
consensus_8250#1      A-GTGTTTATGACACTCATTTTACCTTATAGTGCCAACCCACCCTTATCGATCATCATTA 355
                      * *     *** **  ***     **  ** ****** ***     *   *  *  ** *

consensus_8250#0      AAGACTGGGATACAAAACAGGATGATTAAATG--AATACTAGATGAAGTCTGGTACTGCT 657
consensus_8250#1      CA--CTGATGGGCATTTCATTATGTTGAGATGCCAACACTCAGTGATGTATGAT------ 407
                       *  ***     **   **  *** * * ***  ** ***   *** ** ** *      

consensus_8250#0      CTCTTACTTTCATAGGGACAGACTAATGGTAGCTGCAAAACATGTTTATGCAGATAGTTT 717
consensus_8250#1      -TGTTGGGTGGTCAGTG-CGTAGCCATGTTTCCTTGTGAGCATGTGTTTACA-------T 458
                       * **   *    ** * *  *   *** *  **    * ***** * * **       *

consensus_8250#0      GTTTCTCTTCTTTTTGCTGCATAAGACATGATTCTACCGTGCCATCAACTGTCTTACAGT 777
consensus_8250#1      GCATGCGTTTTTTGAGTTA-GCAAGGTAGTTTGCAAGTGGGCTTTTAACTCAAGGAAAAT 517
                      *  *   ** ***  * *    ***  *   * * *  * **  * ****     * * *

consensus_8250#0      TTACATCTGCTACCAAAATTTCTGCAAAGTATGTAAACG-ATCGATTGGTAGCCGCTTGT 836
consensus_8250#1      GCTCGGGTGATTTTATA--TCATGGAATGCAGTAATGCACATCTTATTTTATTTAATC-T 574
                         *   ** *   * *  *  ** ** * *   *  *  ***   *  **     *  *

consensus_8250#0      CATGTACTGTCCTGTTATGCTTAATTAGAGA-AGAATTGTGTAAAAAAAAAAAAAAAAAA 895
consensus_8250#1      CAT-TTTTCTAGTGATCAGATTGTTTGCATATACAGTTATGCAAGGTAATACAATTTTAA 633
                      *** *  * *  ** *  * **  **  * * * * ** ** **   ** * **    **

consensus_8250#0      AAAA 899
consensus_8250#1      TGT- 636