These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8257#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1326 fasta sequence [GCCACCGGAGCCCGCATCCGCATCCACCACCTCCGCTCGCAATCACTCTACAACAGATCGGAAACCTCGCGGGCGGCGGCGGCGGCGGCGCGGGTAAGCGAGCGGACACCGGCGACGAGCGCGAGGAGGAGGAGGAGGAGGAAGGAGAAGATGGCGGCGACGCTGTCGCAGCTCGACGACGGGATCGTCCGCGGGATGGCCATCGGCGCGGTATTCACCGACTACGCTGGGAAGATAAACTGCCTCGACTTCCACCGCAAGGAGGATCTCCTCGTCACCTCCAGCGAGGACGACTCCATACGCCTCTACAACATCACCAGCGCCACGTTGTTGAAGACTACATATCATAGGAAACATGGTGCTGACCGTGTCTG-TTTCACTCACCATCCGAGTTCTATCTTATGTTCATCAAGATACAA-TCTAGAGTCAGCA-GAGTCACTTC-GTTATTTATCACTGTATGACAACCGTTGCTTAAGATATTTTAAAGGACACAAAGACAGGGTTGTTTCACTATGTATGTCACCTGTCAACGATAGTTTTATGTCAGGATCACTTGATCACAGTGTCAGGATATGGGATCTTCGTGTAAATGCTTGTCAGCATTAGGGTATACTACGTTTGCGTGGTAGGCCTTCTGTTGCATATGATCAGCAGGGACTTGTTTTTGCCGTGGCAATGGAAGGAGGTGCTATTAAGCTATTTGATTCCCGGTCATATGACAAAGGTCCCTTTGACACTTTCTTGGTTGGTGGAGATACAGCTGAAGTTTCTGACATCAAATTTAGCAATGATGGCAAGTCCATGCTTTTGACAACAACCAACAACCATATATATGTTCTGGATGCATATGGAGGGGATAAGAGGTGTGGCTTTAGTCTGGAGTCATCTCCCAATGTAGCAACTGAAGCTGCTTTTACTCCAGATGGCCAATATGTAATTTCAGGATCTGGTGATGGTACCTTGCATGCTTGGAACATCAATACAATACAAGAGATTGCTTGTTGGAACAGTCACATCGGTCCTATCACTGCTTTGAAGTGGGCTCCCCGTCGAGCAATGTTTGCAACTGCGTCAACTGCCCTAACTTTCTGGATTCCCAACAATTCCAGTTCGAATTAGGTGCCTAGCAAAAAGGATGGAACGTGTGATATGCTGATTCAACAAACACTTGTATCCTGTTCTTTCCTGCACAAGATGGGTATCGTGTATGAAGTATCAATCTCTTTATTACCATCTGTGGCAAAAAATGATGATGTACACCTTCCCATTGTATTCTCTTATGGCTATTGTTAATACACATAAAATTTTCTGCAAAAAAAAAAAAGA] [+] EMBL OSS14572A [GCCACCGGAGCCCGCATCCGCATCCACCACCTCCGCTCGCAATCACTCTACAACAGATCGGAAACCTCGCGGGCGGCGGCGGCGGCGGCGCGGGTAAGCGAGCGGACACCGGCGACGAGCGCGAGGAGGAGGAGGAGGAGGAAGGAGAAGATGGCGGCGACGCTGTCGCAGCTCGACGACGGGATCGTCCGCGGGATGGCCATCGGCGCGGTATTCACCGACTACGCTGGGAAGATAAACTGCCTCGACTTCCACCGCAAGGAGGATCTCCTCGTCACCTCCAGCGAGGACGACTCCATACGGCTCTACAACATCACCAGCGCCACGTTGTTGAAGACTACATATCATAGGGAACATGGTGCTGACCGTGTCTGTTTTCACTCANCATNCGAGTTCTATCTTATGTTCATCAAGGTACAATTTTAGAGTCAGCAGGAGTCACTTCGGTAATTTATCACTGTATGACAACCGT ] [+] EMBL AK103378 [ ACAGATCGGAAACCTCGCGGGCGGCGGCGGCGGCGGCGCGGGTAAGCGAGCGGACACCGGCGACGAGCGCGAGGAGGAGGAGGAGGAGGAAGGAGAAGATGGCGGCGACGCTGTCGCAGCTCGACGACGGGATCGTCCGCGGGATGGCCATCGGCGCGGTATTCACCGACTACGCTGGGAAGATAAACTGCCTCGACTTCCACCGCAAGGAGGATCTCCTCGTCACCTCCAGCGAGGACGACTCCATACGCCTCTACAACATCACCAGCGCCACGTTGTTGAAGACTACATATCATAGGAAACATGGTGCTGACCGTGTCTG TTTCACTCACCATCCGAGTTCTATCTTATGTTCATCAAGATACAA TCTAGAGTCAGCA GAGTCACTTC GTTATTTATCACTGTATGACAACCGTTGCTTAAGATATTTTAAAGGACACAAAGACAGGGTTGTTTCACTATGTATGTCACCTGTCAACGATAGTTTTATGTCAGGATCACTTGATCACAGTGTCAGGATATGGGATCTTCGTGTAAATGCTTGTC AGGGTATACTACGTTTGCGTGGTAGGCCTTCTGTTGCATATGATCAGCAGGGACTTGTTTTTGCCGTGGCAATGGAAGGAGGTGCTATTAAGCTATTTGATTCCCGGTCATATGACAAAGGTCCCTTTGACACTTTCTTGGTTGGTGGAGATACAGCTGAAGTTTCTGACATCAAATTTAGCAATGATGGCAAGTCCATGCTTTTGACAACAACCAACAACCATATATATGTTCTGGATGCATATGGAGGGGATAAGAGGTGTGGCTTTAGTCTGGAGTCATCTCCCAATGTAGCAACTGAAGCTGCTTTTACTCCAGATGGCCAATATGTAATTTCAGGATCTGGTGATGGTACCTTGCATGCTTGGAACATCAATACAATACAAGAGATTGCTTGTTGGAACAGTCACATCGGTCCTATCACTGCTTTGAAGTGGGCTCCCCGTCGAGCAATGTTTGCAACTGCGTCAACTGCCCTAACTTTCTGGATTCCCAACAATTCCAGTTCGAATTAGGTGCCTAGCAAAAAGGATGGAACGTGTGATATGCTGATTCAACAAACACTTGTATCCTGTTCTTTCCTGCACAAGATGGGTATCGTGTATGAAGTATCAATCTCTTTATTACCATCTGTGGCAAAAAATGATGATGTACACCTTCCCATTGTATTCTCTTATGGCTATTGTTAATACACATAAAATTTTC ] [+] EMBL CB665455 [ GCGGCGCGGGTAAGCGAGCGGACACCGGCGACGAGCGCGAGGAGGAGGAGGAGGAGGAAGGAGAAGATGGCGGCGACGCTGTCGCAGCTCGACGACGGGATCGTCCGCGGGATGGCCATCGGCGCGGTATTCACCGACTACGCTGGGAAGATAAACTGCCTCGACTTCCACCGCAAGGAGGATCTCCTCGTCACCTCCAGCGAGGACGACTCCATACGCCTCTACAACATCACCAGCGCCACGTTGTTGAAGACTACATATCATAGGAAACATGGTGCTGACCGTGTCTG TTTCACTCACCATCCGAGTTCTATCTTATGTTCATCAAGATACAA TCTAGAGTCAGCA GAGTCACTTC GTTATTTATCACTGTATGACAACCGTTGCTTAAGATATTTTAAAGGACACAAAGACAGGGTTGTTTCACTATGTATGTCACCTGTCAACGATAGTTTTATGTCAGGATCACTTGATCACAGTGTCAGGATATGGGATCTTCGTGTAAATGCTTGTCAGCATTAGGGTATACTACGTTTGCGTGGTAGGCCTTCTGTTGCATATGATCAGCAGGGACTTGTTTTTGCCGTGGCAATGGAAGGAGGTGCTATTAAGCTATTTGATTCCCGGTCATATGACAAAGGTCCCTTTGACACTTTCTTGGTTGGTGGAGATACAGCTGAAGTTTCTGACATCAAATTTAGCAATGATGGCAAGTCCATGCTTTTGACAACAACCAACAACCATATATATGTTCTGGATGCATATGGAGGGGANTAGAGGTGTGGCTTTAGTCTGGAGTCATCT ] [-] EMBL CB665456 [ TCAGGATCACTTGATCACAGTGTCAGGATATGGGATCTTCGTGTAAATGCTTGTCAGCATTAGGGTATACTACGTTTGCGTGGTAGGCCTTCTGTTGCATATGATCAGCAGGGACTTGTTTTTGCCGTGGCAATGGAAGGAGGTGCTATTAAGCTATTTGATTCCCGGTCATATGACAAAGGTCCCTTTGACACTTTCTTGGTTGGTGGAGATACAGCTGAAGTTTCTGACATCAAATTTAGCAATGATGGCAAGTCCATGCTTTTGACAACAACCAACAACCATATATATGTTCTGGATGCATATGGAGGGGATAAGAGGTGTGGCTTTAGTCTGGAGTCATCTCCCAATGTAGCAACTGAAGCTGCTTTTACTCCAGATGGCCAATATGTAATTTCAGGATCTGGTGATGGTACCTTGCATGCTTGGAACATCAATACAATACAAGAGATTGCTTGTTGGAACAGTCACATCGGTCCTATCACTGCTTTGAAGTGGGCTCCCCGTCGAGCAATGTTTGCAACTGCGTCAACTGCCCTAACTTTCTGGATTCCCAACAATTCCAGTTCGAATTAGGTGCCTAGCAAAAAGGATGGAACGTGTGATATGCTGATTCAACAAACACTTGTATCCTGTTCTTTCCTGCACAAGATGGGTATCGTGTATGAAGTATCAATCTCTTTATTACCATCTGTGGCAAAAAATGATGATGTACACCTTCCCATTGTATTCTCTTATGGCTATTGTTAATCCACATAAAATTTTCTGCAAAAAAAAAAAAGA] consensusID : consensus_8257#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence [GATACAATCTAGAGTCAGCAGAGTCACTTCGTTATTTATCACTGTATGACAACCGTTGCTTAAGATATTTTAAAGGACACAAAGACAGGGTTGTTTCACTATGTATGTCACCTGTCAACGATAGTTTTATGTCAGGATCACTTGATCACAGTGTCAGGATATGGGATCTTCGTGTAAATGCTTGTCAGGGTATACTACGTTTGCGTGGTAGGCCTTCTGTTGCATATGATCAGCAGGGACTTGTTTTTGCCGTGGCAATGTCTTGTCTCCACCGTCAATGATCCGCTTGTACCTAGATTACTCTTTCCATTGTCATCGGCTAACATTGTGATAATATCAGTTTGCGTATGTTAGATTAAATTGTTTCTAA] [+] EMBL CF196081 [GATACAATCTAGAGTCAGCAGAGTCACTTCGTTATTTATCACTGTATGACAACCGTTGCTTAAGATATTTTAAAGGACACAAAGACAGGGTTGTTTCACTATGTATGTCACCTGTCAACGATAGTTTTATGTCAGGATCACTTGATCACAGTGTCAGGATATGGGATCTTCGTGTAAATGCTTGTCAGGGTATACTACGTTTGCGTGGTAGGCCTTCTGTTGCATATGATCAGCAGGGACTTGTTTTTGCCGTGGCAATGTCTTGTCTCCACCGTCAATGATCCGCTTGTACCTAGATTACTCTTTCCATTGTCATCGGCTAACATTGTGATAATATCAGTTTGCGTATGTTAGATTAAATTGTTTCTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8257#0 GCCACCGGAGCCCGCATCCGCATCCACCACCTCCGCTCGCAATCACTCTACAACAGATCG 60 consensus_8257#1 ------------------------------------------------------------ consensus_8257#0 GAAACCTCGCGGGCGGCGGCGGCGGCGGCGCGGGTAAGCGAGCGGACACCGGCGACGAGC 120 consensus_8257#1 ------------------------------------------------------------ consensus_8257#0 GCGAGGAGGAGGAGGAGGAGGAAGGAGAAGATGGCGGCGACGCTGTCGCAGCTCGACGAC 180 consensus_8257#1 ------------------------------------------------------------ consensus_8257#0 GGGATCGTCCGCGGGATGGCCATCGGCGCGGTATTCACCGACTACGCTGGGAAGATAAAC 240 consensus_8257#1 ------------------------------------------------------------ consensus_8257#0 TGCCTCGACTTCCACCGCAAGGAGGATCTCCTCGTCACCTCCAGCGAGGACGACTCCATA 300 consensus_8257#1 ------------------------------------------------------------ consensus_8257#0 CGCCTCTACAACATCACCAGCGCCACGTTGTTGAAGACTACATATCATAGGAAACATGGT 360 consensus_8257#1 ------------------------------------------------------------ consensus_8257#0 GCTGACCGTGTCTGTTTCACTCACCATCCGAGTTCTATCTTATGTTCATCAAGATACAAT 420 consensus_8257#1 ----------------------------------------------------GATACAAT 8 ******** consensus_8257#0 CTAGAGTCAGCAGAGTCACTTCGTTATTTATCACTGTATGACAACCGTTGCTTAAGATAT 480 consensus_8257#1 CTAGAGTCAGCAGAGTCACTTCGTTATTTATCACTGTATGACAACCGTTGCTTAAGATAT 68 ************************************************************ consensus_8257#0 TTTAAAGGACACAAAGACAGGGTTGTTTCACTATGTATGTCACCTGTCAACGATAGTTTT 540 consensus_8257#1 TTTAAAGGACACAAAGACAGGGTTGTTTCACTATGTATGTCACCTGTCAACGATAGTTTT 128 ************************************************************ consensus_8257#0 ATGTCAGGATCACTTGATCACAGTGTCAGGATATGGGATCTTCGTGTAAATGCTTGTCAG 600 consensus_8257#1 ATGTCAGGATCACTTGATCACAGTGTCAGGATATGGGATCTTCGTGTAAATGCTTGTCAG 188 ************************************************************ consensus_8257#0 CATTAGGGTATACTACGTTTGCGTGGTAGGCCTTCTGTTGCATATGATCAGCAGGGACTT 660 consensus_8257#1 ------GGTATACTACGTTTGCGTGGTAGGCCTTCTGTTGCATATGATCAGCAGGGACTT 242 ****************************************************** consensus_8257#0 GTTTTTGCCGTGGCAATGGAAGGAGGTGCTATTAAGCTATTTGATTCCCGGTCATATGAC 720 consensus_8257#1 GTTTTTGCCGTGGCAATGTCTTGTCTCCACCGTCAATGATCCGCTT---GTACCTAGATT 299 ****************** * * * ** * ** * * ** consensus_8257#0 AAAGGTCCCTTTGACACTTTCTTGGTTGGTGGAGATA-CAGCTGAAGTTTCTGACATCAA 779 consensus_8257#1 ACTCTTTCCATTGTCATCGGCTAACATTGTGATAATATCAGTTTGCGTATGTTAGATTAA 359 * * ** *** ** ** * *** *** *** * ** * * * ** ** consensus_8257#0 ATTTAGCAATGATGGCAAGTCCATGCTTTTGACAACAACCAACAACCATATATATGTTCT 839 consensus_8257#1 ATT-GTTTCTAA------------------------------------------------ 370 *** * * consensus_8257#0 GGATGCATATGGAGGGGATAAGAGGTGTGGCTTTAGTCTGGAGTCATCTCCCAATGTAGC 899 consensus_8257#1 ------------------------------------------------------------ consensus_8257#0 AACTGAAGCTGCTTTTACTCCAGATGGCCAATATGTAATTTCAGGATCTGGTGATGGTAC 959 consensus_8257#1 ------------------------------------------------------------ consensus_8257#0 CTTGCATGCTTGGAACATCAATACAATACAAGAGATTGCTTGTTGGAACAGTCACATCGG 1019 consensus_8257#1 ------------------------------------------------------------ consensus_8257#0 TCCTATCACTGCTTTGAAGTGGGCTCCCCGTCGAGCAATGTTTGCAACTGCGTCAACTGC 1079 consensus_8257#1 ------------------------------------------------------------ consensus_8257#0 CCTAACTTTCTGGATTCCCAACAATTCCAGTTCGAATTAGGTGCCTAGCAAAAAGGATGG 1139 consensus_8257#1 ------------------------------------------------------------ consensus_8257#0 AACGTGTGATATGCTGATTCAACAAACACTTGTATCCTGTTCTTTCCTGCACAAGATGGG 1199 consensus_8257#1 ------------------------------------------------------------ consensus_8257#0 TATCGTGTATGAAGTATCAATCTCTTTATTACCATCTGTGGCAAAAAATGATGATGTACA 1259 consensus_8257#1 ------------------------------------------------------------ consensus_8257#0 CCTTCCCATTGTATTCTCTTATGGCTATTGTTAATACACATAAAATTTTCTGCAAAAAAA 1319 consensus_8257#1 ------------------------------------------------------------ consensus_8257#0 AAAAAGA 1326 consensus_8257#1 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||