These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8269#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1739 fasta sequence [AAATTTTGTCCCACCGGAGCCTACTAACAGCGCAATAGCTGATAACCTGAAAATAGATCCATTCAATCCTTGTGTGGAATTATCCCTATGCAGGCACCTGTTATCAGAAGGCATGGGAGAAGATGCTGCATGCAAAGCATTCGATGCAGAGAAGGTAACCTTAGAGAAGTTTCGTGCCATGAAGCAGTCGCTGATAAGAAACAACAAGCTTGTTGTTAGGATTGCTGGTCGATACTTTCCGTGGGATGCAGCTGCACCTGTCATACTGGGCATGGTTTCTTTTCAGGAGGAACAATCCTTTGAACCCCAAGGTATGATAAAGGTAGAGCGAGTTGAGCCAAATGCAGCACCAGGTGGCTGGAGAATATGGCCATTTTCTTTCAAAAGGACAAGGTCTGTTAACACTGTCCAGCCAGTTTCTGAAAGCACTGAGGAGGCTTCCTCTTCCGCTCCTGTTAAAGAAGTGGAGAGAGAAAACAACAAACCCAGGGCAAAGAGGATGGAGAGAAAAGTGCGTTCGCTCACTCCAACATCTGAGGAGCTAGCATCTCTTGATCTCAGAGAGGGCAGGAACGTGGTAACATTTACCTTCTCAACTGGAATGCTTGGAAAACAGCAGGTAGATGCTCACATATATTTATGGAAATGGAATGCACGCATTGTCATTTCAGATGTTGATGGAACTATCACCAAGTCTGATGTTCTTGGCCAGTTCATGCCGCTGGTTGGTNGTGATTGGTCTCAAAATGGTGTTGCACATTTATTTTCTGCAATAAAGGAAAATGGATATCAGTTGCTTTTCTTGAGTGCGCGTGCTATTTCACAAGCTCACCTGACAAGGCAGTTTCTTTTCAACCTTAAGCAGGATGGAAAAGCTCTTCCTGATGGCCCTGTTGTGATATCTCCTGATGGGCTATTTCCATCACTTTACAGAGAAGTTATCAGACGAGCTCCTCACGAATTCAAGATCTCATGCCTAGGGGCTATCAAAGCACTATTTCCTCCTGACTCAAATCCATTCTATGCTGGATTTGGAAATAGAGATACAGATGAGCTTAGTTACCTCAAGGTTGGGATTCCTATGGGCAAAATTTTTATTATAAATCCCAAGGGTGAAGTTGCGGTGAATCGTCGAGTAGATACAAAATCATACACATCCCTCCATGCTCTTGTCAATGGGATGTTCCCTCCGATATCAACGTCATCTGAGCAGGAGGACTACAATACTTGGAATTACTGGAAAATGCCGTTACCTGCTGTTGATATTTGAGGTATAGCCGCAGTGCACGCTATGCTGTACAAGGTCTCTGGCACGCAGCAGCGGCCATGAGAAATGGCTTCCATGTTGAACAAAAGCACCCTGAGACCAATCGCTGGTTGGTGTCATGTGGATGCTCCTGACATAAATTCTTGCGAGGCTGACACTGTACATAGGATCATAATAGAAAAACTTACAACCTGTATGACCAATGAGTCGGCAGAAGCAGTGTTAATTAGTTCCTTGTTACTCAATTAGTCAATCTGTTGTTGTCCAACATGAGCTGCAAGCCTGCAACTGAATATGTGTAATATACTGACTTGAGTGACTGAATGGAGGGGAAATCTGTGTAGGATGTTGCCCTGCAACTCACGTCACTTCTCATAAGATTTCAGTTCTCTTTTTTTTTAACTATGTAGTTGTGTTTACATTGTATAATTTGTACAAGTTAGCAGTT-----TAATAATGCATTTGCAAATGTGCC] [+] EMBL CB663393 [AAATTTTGTCCCACCGGAGCCTACTAACAGCGCAATAGCTGATAACCTGAAAATAGATCCATTCAATCCTTGTGTGGAATTATCCCTATGCAGGCACCTGTTATCAGAAGGCATGGGAGAAGATGCTGCATGCAAAGCATTCGATGCAGAGAAGGTAACCTTAGAGAAGTTTCGTGCCATGAAGCAGTCGCTGATAAGAAACAACAAGCTTGTTGTTAGGATTGCTGGTCGATACTTTCCGTGGGATGCAGCTGCACCTGTCATACTGGGCATGGTTTCTTTTCAGGAGGAACAATCCTTTGAACCCCAAGGTATGATAAAGGTAGAGCGAGTTGAGCCAAATGCAGCACCAGGTGGCTGGAGAATATGGCCATTTTCTTTCAAAAGGACAAGGTCTGTTAACACTGTCCAGCCAGTTTCTGAAAGCACTGAGGAGGCTTCCTCTTCCGCTCCTGTTAAAGAAGTGGAGAGAGAAAACAACAAACCCAGGGCAAAGAGGATGGAGAGAAAAGTGCGTTCGCTCACTCCAACATCTGAGGAGCTAGCATCTCTTGATCTCAGAGAGGGCAGGAACGTGGTAACATTTACCTTCTCAACTGGAATGCTTGGAAAACAGCAGGTAGATGCTCACATATATTTATGGAAATGGAATGCACGCATTGTCATTTCAGATGTTGATGGAACTATCACCAAGTCTGATGTTCTTGGCCAGTTCATGCCGCTGGTTGGTNGTGATTGGTCTCAAAATGGTGTTGCACATTTATTTTCTGCAATAAAGGAAAATGGATATCAGTTGCTT ] [+] EMBL AK062893 [ ATATATTTATGGAAATGGAATGCACGCATTGTCATTTCAGATGTTGATGGAACTATCACCAAGTCTGATGTTCTTGGCCAGTTCATGCCGCTGGTTGGTGTTGATTGGTCTCAAAATGGTGTTGCACATTTATTTTCTGCAATAAAGGAAAATGGATATCAGTTGCTTTTCTTGAGTGCGCGTGCTATTTCACAAGCTCACCTGACAAGGCAGTTTCTTTTCAACCTTAAGCAGGATGGAAAAGCTCTTCCTGATGGCCCTGTTGTGATATCTCCTGATGGGCTATTTCCATCACTTTACAGAGAAGTTATCAGACGAGCTCCTCACGAATTCAAGATCTCATGCCTAGGGGCTATCAAAGCACTATTTCCTCCTGACTCAAATCCATTCTATGCTGGATTTGGAAATAGAGATACAGATGAGCTTAGTTACCTCAAGGTTGGGATTCCTATGGGCAAAATTTTTATTATAAATCCCAAGGGTGAAGTTGCGGTGAATCGTCGAGTAGATACAAAATCATACACATCCCTCCATGCTCTTGTCAATGGGATGTTCCCTCCGATATCAACGTCATCTGAGCAGGAGGACTACAATACTTGGAATTACTGGAAAATGCCGTTACCTGCTGTTGATATTTGAGGTATAGCCGCAGTGCACGCTATGCTGTACAAGGTCTCTGGCACGCAGCAGCGGCCATGAGAAATGGCTTCCATGTTGAACAAAAGCACCCTGAGACCAATCGCTGGTTGGTGTCATGTGGATGCTCCTGACATAAATTCTTGCGAGGCTGACACTGTACATAGGATCATAATAGAAAAACTTACAACCTGTATGACCAATGAGTCGGCAGAAGCAGTGTTAATTAGTTCCTTGTTACTCAATTAGTCAATCTGTTGTTGTCCAACATGAGCTGCAAGCCTGCAACTGAATATGTGTAATATACTGACTTGAGTGACTGAATGGAGGGGAAATCTGTGTAGGATGTTGCCCTGCAACTCACGTCACTTCTCATAAGATTTCAGTTCTCTTTTTTTTTAACTATGTAGTTGTGTTTACATTGTATAATTTGTACAAGTTAGCAGTT TAATA ] [-] EMBL CB663394 [ TATCAGACGAGCTCCTCACGAATTCAAGATCTCATGCCTAGGGGCTATCAAAGCACTATTTCCTCCTGACTCAAATCCATTCTATGCTGGATTTGGAAATAGAGATACAGATGAGCTTAGTTACCTCAAGGTTGGGATTCCTATGGGCAAAATTTTTATTATAAATCCCAAGGGTGAAGTTGCGGTGAATCGTCGAGTAGATACAAAATCATACACATCCCTCCATGCTCTTGTCAATGGGATGTTCCCTCCGATATCAACGTCATCTGAGCAGGAGGACTACAATACTTGGAATTACTGGAAAATGCCGTTACCTGCTGTTGATATTTGAGGTATAGCCGCAGTGCACGCTATGCTGTACAAGGTCTCTGGCACGCAGCAGCGGCCATGAGAAATGGCTTCCATGTTGAACAAAAGCACCCTGAGACCAATCGCTGGTTGGTGTCATGTGGATGCTCCTGACATAAATTCTTGCGAGGCTGACACTGTACATAGGATCATAATAGAAAAACTTACAACCTGTATGACCAATGAGTCGGCAGAAGCAGTGTTAATTAGTTCCTTGTTACTCAATTAGTCAATCTGTTGTTGTCCAACATGAGCTGCAAGCCTGCAACTGAATATGTGTAATATACTGACTTGAGTGACTGAATGGAGGGGAAATCTGTGTAGGATGTTGCCCTGCAACTCACGTCACTTCTCATAAGATTTCAGTTCTCTTTTTTTTTAACTATGTAGTTGTGTTTACATTGTATAATTTGTACAAGTTAGCAGTT TAATAATGCATTTGCAAATGTGCC] [-] EMBL CB627435 [ AAAATTTTTATTATAAATCCCAAGGGTGAAGTTGCGGTGAATCGTCGAGTAGATACAAAATCATACACATCCCTCCATGCTCTTGTCAATGGGATGTTCCCTCCGATATCAACGTCATCTGAGCAGGAGGACTACAATACTTGGAATTACTGGAAAATGCCGTTACCTGCTGTTGATATTTGAGGTATGGCCGCAGTGCATGCTATGCTGTACAAGGTCTCTGGCACGCAGCAGCGGCCATGAGAAATGGCTTCCATGTTGAACAAAAGCACCCTGAGACCAATCGCTGGTTGGTGTCATGTGGATGCTCCTGACATAAATTCTTGCGAGGCTGACACTGTACATAGGATCATAATAGAAAAACTTACAACCTGTATGACCAATGAGTCGGCAGAAGCAGTGTTAATTAGTTCCTTGTTACTCAATTAGTCAATCTGTTGTTGTCCAACATGAGCTGCAAGCCTGCAACTGAATATGTGTAATATACTGACTTGAGTGACTGAATGGAGGGGAAATCTGTGTAGGATGTTGCCCTGCAACTCACGTCACTTCGCATAAGATTTCAGTTCTC TTTTTTTTAACTATGTAGTTGTGTTTACATTGTATAATTTGTACAAGTTAGCAGTTTAATATAATAATGCATTTGCA ] consensusID : consensus_8269#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence [TATGGGCAAAATTTTTATTATAAATCCCAAGGGTGAAGTTGCGGTGAATCGTCGAGTAGATACAAAATCATACACATCCCTCCATGCTGTTGTCAATGGGATGTTCCCTCCGATATCAACGTCATCTGAGCAGGAGGGCTACAATACTTGGAATTACTGGAAAATGCCGTTACCTGCTGTTGATATTTGAGGTATGGCCGCAGTGCATGCTATGCTGTACAAGGTGTTTGGCACGCAGCAGCGGCCATGAGAAATGGCTTCCATGTTGAACAAAAGCACCCTGAGACCAATCGCTGGTTGGTGTCATGTGGATGCTCCTGACATAAATTCTGGCGAGGTTGACACTGTACATAGGATCATAATAGAAAAACTTACAACCTGTATGACCAATGAGTCGGCAGAAGCAGTGTTAATTAGTTCCTTGTTACTCAATTAGTCAATCTGTTGTTGTCCAACATGAGCTGCAAGCATGCAACTGAATATGTGTAATATACTGACTGGAGTGACTGAATGGAGGGGAAATCTGTGTAGGATGTTGCCCTGCAACTGAGGTCACTTCGCATAAGATTTCAGTTCTCTTTTTTTTAACTATGTAGTTGTGTTTNCATTGTTACCTCAAGGTGGGAAAT] [-] EMBL CB627434 [TATGGGCAAAATTTTTATTATAAATCCCAAGGGTGAAGTTGCGGTGAATCGTCGAGTAGATACAAAATCATACACATCCCTCCATGCTGTTGTCAATGGGATGTTCCCTCCGATATCAACGTCATCTGAGCAGGAGGGCTACAATACTTGGAATTACTGGAAAATGCCGTTACCTGCTGTTGATATTTGAGGTATGGCCGCAGTGCATGCTATGCTGTACAAGGTGTTTGGCACGCAGCAGCGGCCATGAGAAATGGCTTCCATGTTGAACAAAAGCACCCTGAGACCAATCGCTGGTTGGTGTCATGTGGATGCTCCTGACATAAATTCTGGCGAGGTTGACACTGTACATAGGATCATAATAGAAAAACTTACAACCTGTATGACCAATGAGTCGGCAGAAGCAGTGTTAATTAGTTCCTTGTTACTCAATTAGTCAATCTGTTGTTGTCCAACATGAGCTGCAAGCATGCAACTGAATATGTGTAATATACTGACTGGAGTGACTGAATGGAGGGGAAATCTGTGTAGGATGTTGCCCTGCAACTGAGGTCACTTCGCATAAGATTTCAGTTCTCTTTTTTTTAACTATGTAGTTGTGTTTNCATTGTTACCTCAAGGTGGGAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8269#0 AAATTTTGTCCCACCGGAGCCTACTAACAGCGCAATAGCTGATAACCTGAAAATAGATCC 60 consensus_8269#1 ------------------------------------------------------------ consensus_8269#0 ATTCAATCCTTGTGTGGAATTATCCCTATGCAGGCACCTGTTATCAGAAGGCATGGGAGA 120 consensus_8269#1 ------------------------------------------------------------ consensus_8269#0 AGATGCTGCATGCAAAGCATTCGATGCAGAGAAGGTAACCTTAGAGAAGTTTCGTGCCAT 180 consensus_8269#1 ------------------------------------------------------------ consensus_8269#0 GAAGCAGTCGCTGATAAGAAACAACAAGCTTGTTGTTAGGATTGCTGGTCGATACTTTCC 240 consensus_8269#1 ------------------------------------------------------------ consensus_8269#0 GTGGGATGCAGCTGCACCTGTCATACTGGGCATGGTTTCTTTTCAGGAGGAACAATCCTT 300 consensus_8269#1 ------------------------------------------------------------ consensus_8269#0 TGAACCCCAAGGTATGATAAAGGTAGAGCGAGTTGAGCCAAATGCAGCACCAGGTGGCTG 360 consensus_8269#1 ------------------------------------------------------------ consensus_8269#0 GAGAATATGGCCATTTTCTTTCAAAAGGACAAGGTCTGTTAACACTGTCCAGCCAGTTTC 420 consensus_8269#1 ------------------------------------------------------------ consensus_8269#0 TGAAAGCACTGAGGAGGCTTCCTCTTCCGCTCCTGTTAAAGAAGTGGAGAGAGAAAACAA 480 consensus_8269#1 ------------------------------------------------------------ consensus_8269#0 CAAACCCAGGGCAAAGAGGATGGAGAGAAAAGTGCGTTCGCTCACTCCAACATCTGAGGA 540 consensus_8269#1 ------------------------------------------------------------ consensus_8269#0 GCTAGCATCTCTTGATCTCAGAGAGGGCAGGAACGTGGTAACATTTACCTTCTCAACTGG 600 consensus_8269#1 ------------------------------------------------------------ consensus_8269#0 AATGCTTGGAAAACAGCAGGTAGATGCTCACATATATTTATGGAAATGGAATGCACGCAT 660 consensus_8269#1 ------------------------------------------------------------ consensus_8269#0 TGTCATTTCAGATGTTGATGGAACTATCACCAAGTCTGATGTTCTTGGCCAGTTCATGCC 720 consensus_8269#1 ------------------------------------------------------------ consensus_8269#0 GCTGGTTGGTNGTGATTGGTCTCAAAATGGTGTTGCACATTTATTTTCTGCAATAAAGGA 780 consensus_8269#1 ------------------------------------------------------------ consensus_8269#0 AAATGGATATCAGTTGCTTTTCTTGAGTGCGCGTGCTATTTCACAAGCTCACCTGACAAG 840 consensus_8269#1 ------------------------------------------------------------ consensus_8269#0 GCAGTTTCTTTTCAACCTTAAGCAGGATGGAAAAGCTCTTCCTGATGGCCCTGTTGTGAT 900 consensus_8269#1 ------------------------------------------------------------ consensus_8269#0 ATCTCCTGATGGGCTATTTCCATCACTTTACAGAGAAGTTATCAGACGAGCTCCTCACGA 960 consensus_8269#1 ------------------------------------------------------------ consensus_8269#0 ATTCAAGATCTCATGCCTAGGGGCTATCAAAGCACTATTTCCTCCTGACTCAAATCCATT 1020 consensus_8269#1 ------------------------------------------------------------ consensus_8269#0 CTATGCTGGATTTGGAAATAGAGATACAGATGAGCTTAGTTACCTCAAGGTTGGGATTCC 1080 consensus_8269#1 ------------------------------------------------------------ consensus_8269#0 TATGGGCAAAATTTTTATTATAAATCCCAAGGGTGAAGTTGCGGTGAATCGTCGAGTAGA 1140 consensus_8269#1 TATGGGCAAAATTTTTATTATAAATCCCAAGGGTGAAGTTGCGGTGAATCGTCGAGTAGA 60 ************************************************************ consensus_8269#0 TACAAAATCATACACATCCCTCCATGCTCTTGTCAATGGGATGTTCCCTCCGATATCAAC 1200 consensus_8269#1 TACAAAATCATACACATCCCTCCATGCTGTTGTCAATGGGATGTTCCCTCCGATATCAAC 120 **************************** ******************************* consensus_8269#0 GTCATCTGAGCAGGAGGACTACAATACTTGGAATTACTGGAAAATGCCGTTACCTGCTGT 1260 consensus_8269#1 GTCATCTGAGCAGGAGGGCTACAATACTTGGAATTACTGGAAAATGCCGTTACCTGCTGT 180 ***************** ****************************************** consensus_8269#0 TGATATTTGAGGTATAGCCGCAGTGCACGCTATGCTGTACAAGGTCTCTGGCACGCAGCA 1320 consensus_8269#1 TGATATTTGAGGTATGGCCGCAGTGCATGCTATGCTGTACAAGGTGTTTGGCACGCAGCA 240 *************** *********** ***************** * ************ consensus_8269#0 GCGGCCATGAGAAATGGCTTCCATGTTGAACAAAAGCACCCTGAGACCAATCGCTGGTTG 1380 consensus_8269#1 GCGGCCATGAGAAATGGCTTCCATGTTGAACAAAAGCACCCTGAGACCAATCGCTGGTTG 300 ************************************************************ consensus_8269#0 GTGTCATGTGGATGCTCCTGACATAAATTCTTGCGAGGCTGACACTGTACATAGGATCAT 1440 consensus_8269#1 GTGTCATGTGGATGCTCCTGACATAAATTCTGGCGAGGTTGACACTGTACATAGGATCAT 360 ******************************* ****** ********************* consensus_8269#0 AATAGAAAAACTTACAACCTGTATGACCAATGAGTCGGCAGAAGCAGTGTTAATTAGTTC 1500 consensus_8269#1 AATAGAAAAACTTACAACCTGTATGACCAATGAGTCGGCAGAAGCAGTGTTAATTAGTTC 420 ************************************************************ consensus_8269#0 CTTGTTACTCAATTAGTCAATCTGTTGTTGTCCAACATGAGCTGCAAGCCTGCAACTGAA 1560 consensus_8269#1 CTTGTTACTCAATTAGTCAATCTGTTGTTGTCCAACATGAGCTGCAAGCATGCAACTGAA 480 ************************************************* ********** consensus_8269#0 TATGTGTAATATACTGACTTGAGTGACTGAATGGAGGGGAAATCTGTGTAGGATGTTGCC 1620 consensus_8269#1 TATGTGTAATATACTGACTGGAGTGACTGAATGGAGGGGAAATCTGTGTAGGATGTTGCC 540 ******************* **************************************** consensus_8269#0 CTGCAACTCACGTCACTTCTCATAAGATTTCAGTTCTCTTTTTTTTTAACTATGTAGTTG 1680 consensus_8269#1 CTGCAACTGAGGTCACTTCGCATAAGATTTCAGTTCTCTTTTTTTT-AACTATGTAGTTG 599 ******** * ******** ************************** ************* consensus_8269#0 TGTTTACATTGTATAATTTGTACAAGTTAGCAGTTTAATAATGCATTTGCAAATGTGCC 1739 consensus_8269#1 TGTTTNCATTGT-TACCT----CAAGGTGGGAAAT------------------------ 629 ***** ****** ** * **** * * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||