These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8274#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1731 fasta sequence [CCCATTCCCCACCGCCGAACTCGGCCCGTTCTCTCAAAAAAAAAAAAAAAACTCGGCTGGGTTCTTCTCAGTTCTCTCCTCTCCTCTCGTCTCGTCCTCCGCCTCTAGCGAGAACTGAGACGGTGAAGGGGTGGATACTGGAGACTGGAAAATCCATGAATCCATCCAGAGTCGGATTGGTTTCTCGCTCTTTCCCTCCCTCCTGATCTTATTTCAAACCATTCAGTTTTTGTTGCGATTTTGCTGCTTGGGTGGTGGTGGAGCAATGGAAGGGTTTCTGCATCGCCGGAAACCAACCACGACGATGACGACGACGAGGAGGAGGAGGAAGATGCCGTTGCTTCCGGCGAGTCTCCCGAGCAGCGGCGGCCGCCTCGGATCTCCGCCATCCCCCCCGCCGAGCTGCGCCTCGCCGGCGTTGGCACGGAGGCCACCGCTTCGGCAGCCGCAGATGCCGCGGGCGCATGCGGCGGCGGGGGATGGGGGACCCCGTGCGTCGGCTTCCTGCTCGGGGGCTTGGCCCGGGCAACGAAATCTGACCGCCATTGATGGTTTTCCCCCACCATTTGGTCGCCATTTTACTGTACATTGCCTGCGCCGATCTCCATCCATCCCGCGAGCATCCTCGCTCGCTGGCCAGTATCTGTACTTTGTCTGGAATTTGCTTGCGTTAACCCTAGCTTCTCTTCTAGATCTGGAAACTGCCTTTTGTCACATTTTATTTCCCCCAAAATGTGGGGGTTCAAGTTCAGCTGAACCCCATGCTCAGCGAGTCGCGAGGCGATTGCAACATCGGCCATTTCATCTCCGCTAGCGGTGGCTGATGATGGCATTCGCTCCAAAAAACCGCGGCTCGTTTGAAGAGTTGCAAATAGTTTACACCCCTGGATCTAAACACACCCTGAATTCCCCGCGGCGATGAGGAATGAGGCCGGTTTAGCTCCGGCGCCTCTCCTGATCGGTGGCGGCCGCCTCGGATTTCCGCTTTTCGGGGGCCAATCCCCAGCCGCGTCGCGCACGCCGTGCGGCATTGGTCTGGAGGCCACTGCTTTGGCAGCTGCCGATGTCGCGGCGCCTGCGGCGGTGGAGGATGGGGACCGTGCGTGGCGGTATCCGCGTTGGCTTCCTGCCCAGGGTTGGCCGAGCAACGCAAAATCTGAGCCGCAATTGTTGGATTTTTCACTAGCCCGTGCGTTGCAATGGAAAAAAAAAACAAATTGAGTTTCTAGCTTATTTAGTATAAGCACAGCAATACTTCTATGATGATTTTCCTTATTGAACAAGTAGGTGATTTCGAAATTCAAAAGAACCAACGGTGAAATGGAAAGGGCTCTTTGGAGGGTGGCGTGATAATATTGTGGGTAAACATTTTAAGTAGGATTGATTTAGTCGCCATTTTGTTGCACATTGCTACCCCTCTTTCTCCTCCCTCTCTTTCTCCGCGTGCTTGCGTGAGAGAGAAAGCTGGTACTACTTACTCTGCTTAGAGCAAGTTTAATAGTATAGCTAACTACTACTCCCTCCGTTTCACAATGCAAGTCATTTTAGTATTTCCCACATTCATATTGATGTTGATGAATCTAGACATATATATCTATCTAGATTCATTAACATCAATATGCATGTGGGAAATACTAGAATGACTTACATTGTGAAACGGAGGAAGTACTATCTTCATGGGTGTGTGTTTTGAGCTCGAGCTGAGCTTTGACTGCCCTACTTCCAAGTTCC] [+] EMBL AK106303 [CCCATTCCCCACCGCCGAACTCGGCCCGTTCTCTCAAAAAAAAAAAAAAAACTCGGCTGGGTTCTTCTCAGTTCTCTCCTCTCCTCTCGTCTCGTCCTCCGCCTCTAGCGAGAACTGAGACGGTGAAGGGGTGGATACTGGAGACTGGAAAATCCATGAATCCATCCAGAGTCGGATTGGTTTCTCGCTCTTTCCCTCCCTCCTGATCTTATTTCAAACCATTCAGTTTTTGTTGCGATTTTGCTGCTTGGGTGGTGGTGGAGCAATGGAAGGGTTTCTGCATCGCCGGAAACCAACCACGACGATGACGACGACGAGGAGGAGGAGGAAGATGCCGTTGCTTCCGGCGAGTCTCCCGAGCAGCGGCGGCCGCCTCGGATCTCCGCCATCCCCCCCGCCGAGCTGCGCCTCGCCGGCGTTGGCACGGAGGCCACCGCTTCGGCAGCCGCAGATGCCGCGGGCGCATGCGGCGGCGGGGGATGGGGGACCCCGTGCGTCGGCTTCCTGCTCGGGGGCTTGGCCCGGGCAACGAAATCTGACCGCCATTGATGGTTTTCCCCCACCATTTGGTCGCCATTTTACTGTACATTGCCTGCGCCGATCTCCATCCATCCCGCGAGCATCCTCGCTCGCTGGCCAGTATCTGTACTTTGTCTGGAATTTGCTTGCGTTAACCCTAGCTTCTCTTCTAGATCTGGAAACTGCCTTTTGTCACATTTTATTTCCCCCAAAATGTGGGGGTTCAAGTTCAGCTGAACCCCATGCTCAGCGAGTCGCGAGGCGATTGCAACATCGGCCATTTCATCTCCGCTAGCGGTGGCTGATGATGGCATTCGCTCCAAAAAACCGCGGCTCGTTTGAAGAGTTGCAAATAGTTTACACCCCTGGATCTAAACACACCCTGAATTCCCCGCGGCGATGAGGAATGAGGCCGGTTTAGCTCCGGCGCCTCTCCTGATCGGTGGCGGCCGCCTCGGATTTCCGCTTTTCGGGGGCCAATCCCCAGCCGCGTCGCGCACGCCGTGCGGCATTGGTCTGGAGGCCACTGCTTTGGCAGCTGCCGATGTCGCGGCGCCTGCGGCGGTGGAGGATGGGGACCGTGCGTGGCGGTATCCGCGTTGGCTTCCTGCCCAGGGTTGGCCGAGCAACGCAAAATCTGAGCCGCAATTGTTGGATTTTTCACTAGCCCGTGCGTTGCAATGGAAAAAAAAAACAAATTGAGTTTCTAGCTTATTTAGTATAAGCACAGCAATACTTCTATGATGATTTTCCTTATTGAACAAGTAGGTGATTTCGAAATTCAAAAGAACCAACGGTGAAATGGAAAGGGCTCTTTGGAGGGTGGCGTGATAATATTGTGGGTAAACATTTTAAGTAGGATTGATTTAGTCGCCATTTTGTTGCACATTGCTACCCCTCTTTCTCCTCCCTCTCTTTCTCCGCGTGCTTGCGTGAGAGAGAAAGCTGGTACTACTTACTCTGCTTAGAGCAAGTTTAATAGTATAGCTAACTACTACTCCCTCCGTTTCACAATGCAAGTCATTTTAGTATTTCCCACATTCATATTGATGTTGATGAATCTAGACATATATATCTATCTAGATTCATTAACATCAATATGCATGTGGGAAATACTAGAATGACTTACATTGTGAAACGGAGGAAGTACTATCTTCATGGGTGTGTGTTTTGAGCTCGAGCTGAGCTTTGACTGCCCTACTTCCAAGTTCC] [+] EMBL AA752361 [ CACCGCCGAACTCGGCCCGTTCTCTCAAAAAAAAAAAAAAAACTCGGCTGGGTTCTTCTCAGTTCTCTCCTCTCCTCTCGTCTCGTCCTCCGCCTCTAGCGAGAACTGAGACGGTGAAGGGGTGGATACTGGAGACTGGAAAATCCATGAATCCATCCAAAGTCGGATTGGTTTCTCGCTCTTTCCCTCCCTCCTGATCTTATTTC ] [+] EMBL BI796121 [ AAACTCGGTTGGGTTCTTCTCAGTTCTCTCCTCTCCTCTCCTCTCGTCCTCCGCCTCTAGCGAGAACTGAGACGGTGAAGGGGTGGATACTGGAGACTGGAAAATCCATGAATCCATCCAGAGTCGGATTGGTTTCTCGCTCTTTCCCTCTCTCCTGATCTTATTTCAAACCATTCAGTTTTTGTTGCGATTTTGCTGCTTGGGTGGTGGTGGAGCAATGGAAGGGTTTCTGCATCGCCGGAAACCAACCACGACGATGACGACGACGAGGAGGAGGAGGAAGATGCCGTTGCTTCCGGCGAGTCT ] [+] EMBL AK063675 [ GCTGCTTGGGTGGTGGTGGAGCAATGGAAGGGTTTCTGCATCGCCGGAAACCAACCACGACGATGACGACGACGAGGAGGAGGAGGAAGATGCCGTTGCTTCCGGCGAGTCTCCCGAGCAGCGGCGGCCGCCTCGGATCTCCGCCATCCCCCCCGCCGAGCTGCGCCTCGCCGGCGTTGGCACGGAGGCCACCGCTTCGGCAGCCGCAGATGCCGCGGGCGCATGCGGCGGCGGGGGATGGGGGACCCCGTGCGTCGGCTTCCTGCTCGGGGGCTTGGCCCGGGCAACGAAATCTGACCGCCATTGATGGTTTTCCCCCACCATTTGGTCGCCATTTTACTGTACATTGCCTGCGCCGATCTCCATCCATCCCGCGAGCATCCTCGCTCGCTGGCCAGTATCTGTACTTTGTCTGGAATTTGCTTGCGTTAACCCTAGCTTCTCTTCTAGATCTGGAAACTGCCTTTTGTCACATTTTATTTCCCCCAAAATGTGGGGGTTCAAGTTCAGCTGAACCCCATGCTCAGCGAGTCGCGAGGCGATTGCAACATCGGCCATTTCATCTCCGCTAGCGGTGGCTGATGATGGCATTCGCTCCAAAAAACCGCGGCTCGTTTGAAGAGTTGCAAATAGTTTACACCCCTGGATCTAAACACACCCTGAATTCCCCGCGGCGATGAGGAATGAGGCCGGTTTAGCTCCGGCGCCTCTCCTGATCGGTGGCGGCCGCCTCGGATTTCCGCTTTTCGGGGGCCAATCCCCAGCCGCGTCGCGCACGCCGTGCGGCATTGGTCTGGAGGCCACTGCTTTGGCAGCTGCCGATGTCGCGGCGCCTGCGGCGGTGGAGGATGGGGACCGTGCGTGGCGGTATCCGCGTTGGCTTCCTGCCCAGGGTTGGCCGAGCAACGCAAAATCTGAGCCGCAATTGTTGGATTTTTCACTAGCC ] consensusID : consensus_8274#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence [TGGAATTTGCTTGCGTTAACCCTAGCTTCTCTTCTAGATCTGGAAACTGCCTTTTGTCACATTTTATTTCCCCCAAAATGTGGGGGTTCAAGTTCAGCTGAACCCCATGCTCAGCGAGTCGCGAGGCGATTGCAACATCGGCCATTTCATCTCCGCTAGCGGTGGCTGATGATGGCATTCGCTCCAAAAAACCGCGGCTCGTTTGAAGAGTTGCAAATAGTTTACACCCCTGGATCTAAACACACCCTGAATTCCCCGCGGCGATGAGGAATGAGGCCGGTTTAGCTCCGGCGCCTCTCCTGATCGGTGGCGGCCGCCTCGGATTTCCGCTTTTCGGGGGCCAATCCCCAGCCGCGTCGCGCACGCCGTGCGGCATTGGTCTGGAGGCCACTGCTTTGGCAGCTGCCGATGTCGCGGCGCCTGCGGCGGTGGAGGATGGGGACCGTGCGTGGCGGTATCCGCGTTGGCTTCCTGCCCAGGGTTGGCCGAGCAACGCAAAATCTGAGCCGCAATTGTTGGACTATTTATACATTTTCA] [+] EMBL AK063001 [TGGAATTTGCTTGCGTTAACCCTAGCTTCTCTTCTAGATCTGGAAACTGCCTTTTGTCACATTTTATTTCCCCCAAAATGTGGGGGTTCAAGTTCAGCTGAACCCCATGCTCAGCGAGTCGCGAGGCGATTGCAACATCGGCCATTTCATCTCCGCTAGCGGTGGCTGATGATGGCATTCGCTCCAAAAAACCGCGGCTCGTTTGAAGAGTTGCAAATAGTTTACACCCCTGGATCTAAACACACCCTGAATTCCCCGCGGCGATGAGGAATGAGGCCGGTTTAGCTCCGGCGCCTCTCCTGATCGGTGGCGGCCGCCTCGGATTTCCGCTTTTCGGGGGCCAATCCCCAGCCGCGTCGCGCACGCCGTGCGGCATTGGTCTGGAGGCCACTGCTTTGGCAGCTGCCGATGTCGCGGCGCCTGCGGCGGTGGAGGATGGGGACCGTGCGTGGCGGTATCCGCGTTGGCTTCCTGCCCAGGGTTGGCCGAGCAACGCAAAATCTGAGCCGCAATTGTTGGACTATTTATACATTTTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8274#0 CCCATTCCCCACCGCCGAACTCGGCCCGTTCTCTCAAAAAAAAAAAAAAAACTCGGCTGG 60 consensus_8274#1 ------------------------------------------------------------ consensus_8274#0 GTTCTTCTCAGTTCTCTCCTCTCCTCTCGTCTCGTCCTCCGCCTCTAGCGAGAACTGAGA 120 consensus_8274#1 ------------------------------------------------------------ consensus_8274#0 CGGTGAAGGGGTGGATACTGGAGACTGGAAAATCCATGAATCCATCCAGAGTCGGATTGG 180 consensus_8274#1 ------------------------------------------------------------ consensus_8274#0 TTTCTCGCTCTTTCCCTCCCTCCTGATCTTATTTCAAACCATTCAGTTTTTGTTGCGATT 240 consensus_8274#1 ------------------------------------------------------------ consensus_8274#0 TTGCTGCTTGGGTGGTGGTGGAGCAATGGAAGGGTTTCTGCATCGCCGGAAACCAACCAC 300 consensus_8274#1 ------------------------------------------------------------ consensus_8274#0 GACGATGACGACGACGAGGAGGAGGAGGAAGATGCCGTTGCTTCCGGCGAGTCTCCCGAG 360 consensus_8274#1 ------------------------------------------------------------ consensus_8274#0 CAGCGGCGGCCGCCTCGGATCTCCGCCATCCCCCCCGCCGAGCTGCGCCTCGCCGGCGTT 420 consensus_8274#1 ------------------------------------------------------------ consensus_8274#0 GGCACGGAGGCCACCGCTTCGGCAGCCGCAGATGCCGCGGGCGCATGCGGCGGCGGGGGA 480 consensus_8274#1 ------------------------------------------------------------ consensus_8274#0 TGGGGGACCCCGTGCGTCGGCTTCCTGCTCGGGGGCTTGGCCCGGGCAACGAAATCTGAC 540 consensus_8274#1 ------------------------------------------------------------ consensus_8274#0 CGCCATTGATGGTTTTCCCCCACCATTTGGTCGCCATTTTACTGTACATTGCCTGCGCCG 600 consensus_8274#1 ------------------------------------------------------------ consensus_8274#0 ATCTCCATCCATCCCGCGAGCATCCTCGCTCGCTGGCCAGTATCTGTACTTTGTCTGGAA 660 consensus_8274#1 -------------------------------------------------------TGGAA 5 ***** consensus_8274#0 TTTGCTTGCGTTAACCCTAGCTTCTCTTCTAGATCTGGAAACTGCCTTTTGTCACATTTT 720 consensus_8274#1 TTTGCTTGCGTTAACCCTAGCTTCTCTTCTAGATCTGGAAACTGCCTTTTGTCACATTTT 65 ************************************************************ consensus_8274#0 ATTTCCCCCAAAATGTGGGGGTTCAAGTTCAGCTGAACCCCATGCTCAGCGAGTCGCGAG 780 consensus_8274#1 ATTTCCCCCAAAATGTGGGGGTTCAAGTTCAGCTGAACCCCATGCTCAGCGAGTCGCGAG 125 ************************************************************ consensus_8274#0 GCGATTGCAACATCGGCCATTTCATCTCCGCTAGCGGTGGCTGATGATGGCATTCGCTCC 840 consensus_8274#1 GCGATTGCAACATCGGCCATTTCATCTCCGCTAGCGGTGGCTGATGATGGCATTCGCTCC 185 ************************************************************ consensus_8274#0 AAAAAACCGCGGCTCGTTTGAAGAGTTGCAAATAGTTTACACCCCTGGATCTAAACACAC 900 consensus_8274#1 AAAAAACCGCGGCTCGTTTGAAGAGTTGCAAATAGTTTACACCCCTGGATCTAAACACAC 245 ************************************************************ consensus_8274#0 CCTGAATTCCCCGCGGCGATGAGGAATGAGGCCGGTTTAGCTCCGGCGCCTCTCCTGATC 960 consensus_8274#1 CCTGAATTCCCCGCGGCGATGAGGAATGAGGCCGGTTTAGCTCCGGCGCCTCTCCTGATC 305 ************************************************************ consensus_8274#0 GGTGGCGGCCGCCTCGGATTTCCGCTTTTCGGGGGCCAATCCCCAGCCGCGTCGCGCACG 1020 consensus_8274#1 GGTGGCGGCCGCCTCGGATTTCCGCTTTTCGGGGGCCAATCCCCAGCCGCGTCGCGCACG 365 ************************************************************ consensus_8274#0 CCGTGCGGCATTGGTCTGGAGGCCACTGCTTTGGCAGCTGCCGATGTCGCGGCGCCTGCG 1080 consensus_8274#1 CCGTGCGGCATTGGTCTGGAGGCCACTGCTTTGGCAGCTGCCGATGTCGCGGCGCCTGCG 425 ************************************************************ consensus_8274#0 GCGGTGGAGGATGGGGACCGTGCGTGGCGGTATCCGCGTTGGCTTCCTGCCCAGGGTTGG 1140 consensus_8274#1 GCGGTGGAGGATGGGGACCGTGCGTGGCGGTATCCGCGTTGGCTTCCTGCCCAGGGTTGG 485 ************************************************************ consensus_8274#0 CCGAGCAACGCAAAATCTGAGCCGCAATTGTTGGATTTTTCACTAGCCCGTGCGTTGCAA 1200 consensus_8274#1 CCGAGCAACGCAAAATCTGAGCCGCAATTGTTGGACTATTTATACATTTTCA-------- 537 *********************************** * ** * consensus_8274#0 TGGAAAAAAAAAACAAATTGAGTTTCTAGCTTATTTAGTATAAGCACAGCAATACTTCTA 1260 consensus_8274#1 ------------------------------------------------------------ consensus_8274#0 TGATGATTTTCCTTATTGAACAAGTAGGTGATTTCGAAATTCAAAAGAACCAACGGTGAA 1320 consensus_8274#1 ------------------------------------------------------------ consensus_8274#0 ATGGAAAGGGCTCTTTGGAGGGTGGCGTGATAATATTGTGGGTAAACATTTTAAGTAGGA 1380 consensus_8274#1 ------------------------------------------------------------ consensus_8274#0 TTGATTTAGTCGCCATTTTGTTGCACATTGCTACCCCTCTTTCTCCTCCCTCTCTTTCTC 1440 consensus_8274#1 ------------------------------------------------------------ consensus_8274#0 CGCGTGCTTGCGTGAGAGAGAAAGCTGGTACTACTTACTCTGCTTAGAGCAAGTTTAATA 1500 consensus_8274#1 ------------------------------------------------------------ consensus_8274#0 GTATAGCTAACTACTACTCCCTCCGTTTCACAATGCAAGTCATTTTAGTATTTCCCACAT 1560 consensus_8274#1 ------------------------------------------------------------ consensus_8274#0 TCATATTGATGTTGATGAATCTAGACATATATATCTATCTAGATTCATTAACATCAATAT 1620 consensus_8274#1 ------------------------------------------------------------ consensus_8274#0 GCATGTGGGAAATACTAGAATGACTTACATTGTGAAACGGAGGAAGTACTATCTTCATGG 1680 consensus_8274#1 ------------------------------------------------------------ consensus_8274#0 GTGTGTGTTTTGAGCTCGAGCTGAGCTTTGACTGCCCTACTTCCAAGTTCC 1731 consensus_8274#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||