These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8281#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 579 fasta sequence [ATCTCTCTCTTCGCCGCCCTCCCCTCAGCGCCCCCGAGCGGAGGCGGCGACGGCGCCCCTCCTCCCGCGAGCGGCAGGCAGGCAGGCAGGCGGAGCCCTCCCCCACCACCGACGGCAGGTGGCAGGCGACGGCTCTAGCGGGAGGGGCCCCCATCACCGGCGACGGATCTAGCGGGAGGAGAGGCGCCCCGCGAGCGGCGGCGGCGGAGCCCTCCCCCACCACCAGCGGCGGATCTAGCAGAAGGGGAGGCGGCGGCGGCGCTCTCCCCTCCGCCAGCGCCCTCCGCCGGCGGCGGCGGCGGCGGATCTAGCGGGAGGTGAGGCGGCGGCGGCCTG-TCGGCGTCCCAGTGGCGGN-GGCAC---TCTCCCCTCCACCAGATCCAGCAGGAGGGGAGCCGCCGGCGGCCAGCCATCCCTGCGGCGGCGACGGCGGTGGTTCGGCGACGACGGCGGTGGCGGCGACCCCCTTCGATCTAATTTTTTGTTTTTATTTGGATATATATGTGTACTATGCATCATGCTTTCTTCGATTTTGTTGTGTGATTGAACTCCGATTGGGATTTTTTTGGGGTTTACTAAAAA] [+] EMBL AU172915 [ATCTCTCTCTTCGCCGCCCTCCCCTCAGCGCCCCCGAGCGGAGGCGGCGACGGCGCCCCTCCTCCCGCGAGCGGCAGGCAGGCAGGCAGGCGGAGCCCTCCCCCACCACCGACGGCAGGTGGCAGGCGACGGCTCTAGCGGGAGGGGCCCCCATCACCGGCGACGGATCTAGCGGGAGGAGAGGCGCCCCGCGAGCGGCGGCGGCGGAGCCCTCCCCCACCACCAGCGGCGGATCTAGCAGAAGGGGAGGCGGCGGCGGCGCTCTCCCCTCCGCCAGCGCCCTCCGCCGGCGGCGGCGGCGGCGGATCTAGCGGGAGGTGAGGCGGCGGCGGCCTGTTCGGCGTCCCAGTGGCGGN GGCAC TCTCCCCTTCACCAGATCCAGCAGGAGGGGAGCCGNCGGCGGCCAGCCATCCCTGCGG ] [+] EMBL AU182512 [ ACCACCAGCGGCGGATCTAGCAGAAGGGGAGGCGGCGGCGGCGCTCTCCCCTCCGCCAGCGCCCTCCGCCGGCGGCGGCGGCGGCGGATCTAGCGGGAGGTGAGGCGGCGGCGGCCTG TCGGCGTCCCAGTGGCGGC GGCAC TCTCCCCTCCACCAGATCCAGCAGGAGGGGAGCCGCCGGCGGCCAGCCATCCCTGCGGCGGCGACGGCGGTGGTTCGGCGACGACGGCGGTGGCGGCGACCCCCTTCGATCTAATTTTTTGTTTTTATTTGGATATATATGTGTACTATGCATCATGCTTTCTTCGATTTTGTTGTGTGATTGAACTCCGATTGGGATTTTTTTGGGGTTTACTAAAAA] [+] EMBL AU172916 [ GCCCTCCGCCGGCGGCGGCGGCGGCGGATCTAGCGGGAGGTGAGGCGGCGGCGGCCTG TCGGCGTCCCAGTGGCGGNGGGCACTTNTCCCCCCTCCA CAGATCCAGCAGGAGGGGAGCCGCCGGCGGCCAGCCATCCCTGCGGCGGCGACGGCGGTGGTTCGGCGACGACGGCGGTGGCGGCGACCCCCTTCGATCTAATTTTTTGTTTTTATTTGGATATATATGTGTAC ATGCATCATGCTTTCTTCGATTTTGTTGTGTGATTGAACTCCGATTGGGATTTTTTTGGGGTTTACTAAAAA] consensusID : consensus_8281#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 435 fasta sequence [CCCTACCACCGACGGCGGCGTCGGCGGCGCCGGCGGAGGATCTANCGGGAGGGGAGGCGGCGGCGGCGGCGCTCTCCCCTCCGCCAGCGCCCTCCATCGCCGCCGCCGGCGGATCTAGCGGGAGTCCNCCGGATCCAGCAGGAGAGGAGCCGCCGGCTGCCAGCCGTCCCTGCGGCGGCGACGGCGACGGCGGTGCTTCGGAGATGATGGGGCGGCGGCGACTTCCTTCGATCTAATTTTTGGTTTTTATTTGGATATATATGTGATGCTTTCTTCGATTTTATTTGTGTGATTGAACTCCGATTGGGATTTTTTTCGGGGGTTTGAAAAAAAAAATATTAAAAAAGAGAGAAGAAAATAGATAAAAAGGAAGAGAAGAAGAAAAGGAAAATAGAAAATAAGAAAAGAAAAAGAGAGAGAAAAGAAGAATAAAAA] [+] EMBL AU166421 [CCCTACCACCGACGGCGGCGTCGGCGGCGCCGGCGGAGGATCTANCGGGAGGGGAGGCGGCGGCGGCGGCGCTCTCCCCTCCGCCAGCGCCCTCCATCGCCGCCGCCGGCGGATCTAGCGGGAGTCCNCCGGATCCAGCAGGAGAGGAGCCGCCGGCTGCCAGCCGTCCCTGCGGCGGCGACGGCGACGGCGGTGCTTCGGAGATGATGGGGCGGCGGCGACTTCCTTCGATCTAATTTTTGGTTTTTATTTGGATATATATGTGATGCTTTCTTCGATTTTATTTGTGTGATTGAACTCCGATTGGGATTTTTTTCGGGGGTTTGAAAAAAAAAATATTAAAAAAGAGAGAAGAAAATAGATAAAAAGGAAGAGAAGAAGAAAAGGAAAATAGAAAATAAGAAAAGAAAAAGAGAGAGAAAAGAAGAATAAAAA] consensusID : consensus_8281#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 249 fasta sequence [ATCTTTNTCTTCGCCGCCCTCCCCTCANCGCCCCCAAGCGGCGGCGGCGACGGCGCCCCTCCTCCCGCAAGCGGCGGCGGCGGCGGCGGACCTCCCCCACCACCGACGGCGGTGGCGGCNACGGCTCTAGCGGGAGGGGCCCCCATNACCGGCNACGGATCTAGCGGGAGGAGAGGCGCCCCGAAGCGGCGGCGGCGGACCTCCCCCACCACCAGCGGCGGATCTAGCAGAAGGNGAGGCNGCGGCGGC] [+] EMBL AU101231 [ATCTTTNTCTTCGCCGCCCTCCCCTCANCGCCCCCAAGCGGCGGCGGCGACGGCGCCCCTCCTCCCGCAAGCGGCGGCGGCGGCGGCGGACCTCCCCCACCACCGACGGCGGTGGCGGCNACGGCTCTAGCGGGAGGGGCCCCCATNACCGGCNACGGATCTAGCGGGAGGAGAGGCGCCCCGAAGCGGCGGCGGCGGACCTCCCCCACCACCAGCGGCGGATCTAGCAGAAGGNGAGGCNGCGGCGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8281#0 ATCTCTCTCTTCGCCGCCCTCCCCTCAGCGCCCCCGAGCGGAGGCGGCGACGGCGCCCCT 60 consensus_8281#2 ATCTTTNTCTTCGCCGCCCTCCCCTCANCGCCCCCAAGCGGCGGCGGCGACGGCGCCCCT 60 consensus_8281#1 ----------------CCCTACCACCGACGGC----GGCGTCGGCGGCGCCGGCGGAGGA 40 **** ** * ** * *** ******* ***** consensus_8281#0 CCTCCCGCGAGCGGCAGGCAGGCAGGCAGGCGGAGCCCTCCCC--CACCACCGACGGCAG 118 consensus_8281#2 CCTCCCGCAAGCGGCGGC--GGCGG--CGGCGGA--CCTCCCC--CACCACCGACGGC-G 111 consensus_8281#1 TCTANCGGGAGGGGAGGC--GGCGG--CGGCGGCGCTCTCCCCTCCGCCAGCGCCCTCCA 96 ** ** ** ** * *** * ***** ****** * *** ** * * consensus_8281#0 GTG--GCAGGCGACGGCTCTAGCGGGAGGGGCCCCCATCACCGGCGACGGATCTAGCGGG 176 consensus_8281#2 GTG--GC-GGCNACGGCTCTAGCGGGAGGGGCCCCCATNACCGGCNACGGATCTAGCGGG 168 consensus_8281#1 TCGCCGCCGCCGGCGGATCTAGCGGGAG---TCCNC-----------CGGATCCAGCAGG 142 * ** * * *** *********** ** * ****** *** ** consensus_8281#0 AGGAGAGGCGCC--CCGCGAGCGGCGGCGGCGGAGCCCTCCCCCACCACCAGCGGCGGAT 234 consensus_8281#2 AGGAGAGGCGCC--CCG-AAGCGGCGGCGGCGGA--CCTCCCCCACCACCAGCGGCGGAT 223 consensus_8281#1 AGAGGAGCCGCCGGCTGCCAGCCGTCCCTGCGG----CGGCGACGGCGACGGCGGTG--C 196 ** *** **** * * *** * * **** * * * * * **** * consensus_8281#0 CTAGCAGAAGGGGAGGCGGCGGCGGCGCTCTCCCCTCCGCCAGCGCCCTCCGCCGGCGGC 294 consensus_8281#2 CTAGCAGAAGGNGAGGCNGCGGCGGC---------------------------------- 249 consensus_8281#1 TTCGGAGATGATGGGGCGGCGGCGACTTCCTTCGATCTAATTTTTGGTTTTTATTTGGAT 256 * * *** * * *** ****** * consensus_8281#0 GGCGGCGGCGGATCTAGCGGGAGGTGAGGCGGCGGCGGCCTGTCGGCGTCCCAGTGGCGG 354 consensus_8281#2 ------------------------------------------------------------ consensus_8281#1 ATATATGTGATGCTTTCTTCGATTTTATTTGTGTGATTGAACTCCGATTGGGATTTTTTT 316 consensus_8281#0 NGGCACTCTCCCCTCCACCAGATCCAGCAGGAGGGGAGCCGCCGGCGGCCAGCCATCCCT 414 consensus_8281#2 ------------------------------------------------------------ consensus_8281#1 CGGGGGTTTGAAAAAAAAAATATTAAAAAAGAGAGAAGAAAATAGATAAAAAGGAAGAGA 376 consensus_8281#0 GCGGCGGCGACGGCGGTGGTTCGGCGACGACGGCGGTGGCGGCGACCCCCTTCGATCTAA 474 consensus_8281#2 ------------------------------------------------------------ consensus_8281#1 AGAAGAAAAGGAAAATAGAAAATAAGAAAAGAAAAAGAGAGAGAAAAGAAGAATAAAAA- 435 consensus_8281#0 TTTTTTGTTTTTATTTGGATATATATGTGTACTATGCATCATGCTTTCTTCGATTTTGTT 534 consensus_8281#2 ------------------------------------------------------------ consensus_8281#1 ------------------------------------------------------------ consensus_8281#0 GTGTGATTGAACTCCGATTGGGATTTTTTTGGGGTTTACTAAAAA 579 consensus_8281#2 --------------------------------------------- consensus_8281#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||