These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8285#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1799 fasta sequence [TCTAATCCTCATTTGGGTTTTCCGCATCCCTTAGGGCGTCCACTATCTAGAGGCACTTCAGGAGAAACAATGAGTTTGTCTCGTCATAATAGTGATGATACTGTAGTTGTAAGGTTTGTAGGCTCTGCATTGGTTGGGAAATCAGAAACTGAAGATGCATGCCATCATGGCCTTGTTGAACCCACTATAAACACTAAAGAGGCAATGGATGCTATCAGTAGCATGTTTTTGGAGCCATTGGAACCAGAAACTAAGCTCAAGAGGCGCTCAAATCGTGATAAACCAAGTTTTAATCAGGAAGCAAGTGCATTTGAGATCTTTGTCGATGAAGATAACCTAACAAGAGTGGACCCAGCAAACTCCAGGACAAAAACATGAAGCAGGATAATCCAAAGTTAAGTCAGCAGGCAAGCGCATTTGAGATCTTTGTAGATGAAGATGATCCTTACTGCAACAACCAAAATATGGTGCAGCATAGGCACTTTAATAAGGAGAACACACAGGTAAATCAGAATGCAAGTGGATTTGAAATCTTTGTTGATGAAAATGAGGCTCATGGCAATGGTCGTAATGCCATGAGCCATAAGAGTAGTGGATGTCCTCCAAAGCCATCGCGTGATTCAAAGCAGCAAGCCAATTTTGACTTCCAGAAACCATTCGTGGGAGGGTTTGCAATACTGCCTGATGATGAAGATGAACAGCTTGAGAAAAATGATAATGGTGTTAAGATCAATTCTGGAACTGTGCAACTAACTGATGATAAGGACACTTCACTCTGTTCGAGACAAACTGATTCAAAAATAAGATGTGATGACTTACGTCCTGCAATATCTGGACTTCGAGAAGACACTGTCTTTCATAGATTTGTTGGATCAGCTGTTGTTGGAGAGCCTAAAGTGGAAAATGCTTGCCACCATGGGTTGGTCGAACCAACTGTCAATTTAAAGGAGGCTATGGATGATATAAATAACATGTTTGGGATACCACTGAACTTCAAAGGTGATAAACCTAAAAACAAGAAAACCACTGCATTGTCAGAGAGAAAAGCGGCACTGCTCAGTGGTTTCTCCATATTAGCTGATGATGAACCAGGCGAAAATCCAGCAGCCCAAGTTAAACCAAGCAATGCTTCCAAATTTGAATGTCAGAGTGGTCTCTTTGAGCCCACTATTACTACCCGCGATGTGATGGCTGAGATCAATGACATGTTCGGAATGCCACTGGACTTCTAAGACTAGTGCTTAAATGGAACAGAATAACTCTTTTGACAGAAGAGTTTTCCTTTACCCTCTCACTCACTCCTTGAGAGTGAGGTAAGGTTCCCAAGATGTCAGAATATGAAATGAAGTGCTATGTAGTATATTGGTGCATTCTTGATGATAAGAAGAGCTTGGTTTTTTTTTGTTGAATCCTTTGATGCACAGCTGTTGTGTCTAGTGAATATTTACATGAGTTATTGAAATTACAATTCTCAAAGCTTTATCTGATTCATATTTCCCTGATAAAATTTGAAGTGTAGCAAATGGGCATTAGTTTGCTGATTTATACTCTTGGTAAATGAGCACTATCTCCTTGAATTGCAAATGTATCTTACTTTTGATGCCCTGAGTTGTTTTGCTGTATCACTTAAATGAGAATTCCTTTTTCCCNCTGTTGATGTAGTTGTTGCGGATGTAATTGATCTNTAGAATTTCCTCCAGAGTGTATTTTGGATAGCATCATCCAATNTGAATGCGGGTATTGGGTTAACTGCTGCTTAAATATGATTATATTTTCCTAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK102502 [TCTAATCCTCATTTGGGTTTTCCGCATCCCTTAGGGCGTCCACTATCTAGAGGCACTTCAGGAGAAACAATGAGTTTGTCTCGTCATAATAGTGATGATACTGTAGTTGTAAGGTTTGTAGGCTCTGCATTGGTTGGGAAATCAGAAACTGAAGATGCATGCCATCATGGCCTTGTTGAACCCACTATAAACACTAAAGAGGCAATGGATGCTATCAGTAGCATGTTTTTGGAGCCATTGGAACCAGAAACTAAGCTCAAGAGGCGCTCAAATCGTGATAAACCAAGTTTTAATCAGGAAGCAAGTGCATTTGAGATCTTTGTCGATGAAGATAACCTAACAAGAGTGGACCCAGCAAACTCCAGGACAAAAACATGAAGCAGGATAATCCAAAGTTAAGTCAGCAGGCAAGCGCATTTGAGATCTTTGTAGATGAAGATGATCCTTACTGCAACAACCAAAATATGGTGCAGCATAGGCACTTTAATAAGGAGAACACACAGGTAAATCAGAATGCAAGTGGATTTGAAATCTTTGTTGATGAAAATGAGGCTCATGGCAATGGTCGTAATGCCATGAGCCATAAGAGTAGTGGATGTCCTCCAAAGCCATCGCGTGATTCAAAGCAGCAAGCCAATTTTGACTTCCAGAAACCATTCGTGGGAGGGTTTGCAATACTGCCTGATGATGAAGATGAACAGCTTGAGAAAAATGATAATGGTGTTAAGATCAATTCTGGAACTGTGCAACTAACTGATGATAAGGACACTTCACTCTGTTCGAGACAAACTGATTCAAAAATAAGATGTGATGACTTACGTCCTGCAATATCTGGACTTCGAGAAGACACTGTCTTTCATAGATTTGTTGGATCAGCTGTTGTTGGAGAGCCTAAAGTGGAAAATGCTTGCCACCATGGGTTGGTCGAACCAACTGTCAATTTAAAGGAGGCTATGGATGATATAAATAACATGTTTGGGATACCACTGAACTTCAAAGGTGATAAACCTAAAAACAAGAAAACCACTGCATTGTCAGAGAGAAAAGCGGCACTGCTCAGTGGTTTCTCCATATTAGCTGATGATGAACCAGGCGAAAATCCAGCAGCCCAAGTTAAACCAAGCAATGCTTCCAAATTTGAATGTCAGAGTGGTCTCTTTGAGCCCACTATTACTACCCGCGATGTGATGGCTGAGATCAATGACATGTTCGGAATGCCACTGGACTTCTAAGACTAGTGCTTAAATGGAACAGAATAACTCTTTTGACAGAAGAGTTTTCCTTTACCCTCTCACTCACTCCTTGAGAGTGAGGTAAGGTTCCCAAGATGTCAGAATATGAAATGAAGTGCTATGTAGTATATTGGTGCATTCTTGATGATAAGAAGAGCTTGGTTTTTTTTTGTTGAATCCTTTGATGCACAGCTGTTGTGTCTAGTGAATATTTACATGAGTTATTGAAATTACAATTCTCAAAGCTTTATCTGATTCATATTTCCCTGATAAAATTTGAAGTGTAGCAAATGGGCATTAGTTTGCTGATTTATACTCTTGGTAAATGAGCACTATCTCCTTGAATTGCAAATGTATCTTACTTTTGATGCCCTGAGTTGTTTTGCTGTATCACTTAAATGAGAATTCCT ] [+] EMBL CA762346 [ AGACAAACTGATTCAAAAATAAGATGTGATGACTTACATCCAGCAATATCTGGACTTCGAGAAGACACGGTCTTTCATAGATTTGTTGGATCAGCTGTTGTTGGAGAGCCTAAAGTGGAAAATGCTTGCCACCATGGGTTGGTCGAACCAACTGTCAATTTAAAGGAGGCTATGGATGATATAAATAACATGTTTGGGATACCACTGAACTTCAAAGGTGAGAAACCTAAAAACAA ] [+] EMBL AU172368 [ taCTGATTCATATTTCCCTGATAAAATTTGAAGTGTAACAAATGGGCATTAGTTTGCTGATTTATACTCTTGGTAAATGAGCNCTATNTCCTTGAATTGCAAATGTATCTTACTTTTAATGCCCTGAGTTGTTTTGCTGTATCNCTTAAATGAGAATTCCTTTTTCCCNCTGTTGATGTAGTTGTTGCGGATGTAATTGATCTNTAGAATTTCCTCCAGAGTGTATTTTGGATAGCATCATCCAATNTGAATGCGGGTATTGGGTTAACTGCTGCTTAAATATGATTATATTTTCCTAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_8285#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 402 fasta sequence [TCTAATCCTCATTTGGGTTTTCCGCATCCGTTAGGGCGTCCACTATATAGAGGCACTTCAGGAGATACAAAGAGTTTGTCTCGTCATAATAGTGATGATACTGTAGTTGTAAGGTTTGTAGGCTCTGCATTGGTTGGGAAATCAGAAACTGAAGATGCATGCCATCATGGCCTTGTTGAACCCACTATAAACACTAAAGAGGCAATGGATGCTATCAGTAGCATGTTTTTGGAGCCATTGGAACCAGAAACTAAGCTCAAGAGGCGCTCAAATCGTGATAAACCAAGTTTTAATCAGGAAGCAAGTGCATTTGAGATATTTGTCGATGAAGATGAACCTAACAAGAGTGGACCCAGCAAACTCCAGGACAAGAACAAACTCCAGGACAAGAACATGAAGCAG] [+] EMBL AU172367 [TCTAATCCTCATTTGGGTTTTCCGCATCCGTTAGGGCGTCCACTATATAGAGGCACTTCAGGAGATACAAAGAGTTTGTCTCGTCATAATAGTGATGATACTGTAGTTGTAAGGTTTGTAGGCTCTGCATTGGTTGGGAAATCAGAAACTGAAGATGCATGCCATCATGGCCTTGTTGAACCCACTATAAACACTAAAGAGGCAATGGATGCTATCAGTAGCATGTTTTTGGAGCCATTGGAACCAGAAACTAAGCTCAAGAGGCGCTCAAATCGTGATAAACCAAGTTTTAATCAGGAAGCAAGTGCATTTGAGATATTTGTCGATGAAGATGAACCTAACAAGAGTGGACCCAGCAAACTCCAGGACAAGAACAAACTCCAGGACAAGAACATGAAGCAG] consensusID : consensus_8285#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 216 fasta sequence [TTTTTTTTTTTTGAATCCTTTGATGCACAGCTGTTGTGTCTAGTGAATATTTACATGAGTTATTGAAATTACANTTCTCAGTGCTTTACTGATTCANATTNCCCTGATAAAATTTGAAGTGTAACAAATGGGCATTAGTTTGCTGATTTANACTCTTGGTAAATGAGCACTATCTCCTTGANTTGCAAAAAAAAAAAAAAAAAAAAAANANAAAAA] [-] EMBL AU068266 [TTTTTTTTTTTTGAATCCTTTGATGCACAGCTGTTGTGTCTAGTGAATATTTACATGAGTTATTGAAATTACANTTCTCAGTGCTTTACTGATTCANATTNCCCTGATAAAATTTGAAGTGTAACAAATGGGCATTAGTTTGCTGATTTANACTCTTGGTAAATGAGCACTATCTCCTTGANTTGCAAAAAAAAAAAAAAAAAAAAAANANAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8285#0 TCTAATCCTCATTTGGGTTTTCCGCATCCCTTAGGGCGTCCACTATCTAGAGGCACTTCA 60 consensus_8285#1 TCTAATCCTCATTTGGGTTTTCCGCATCCGTTAGGGCGTCCACTATATAGAGGCACTTCA 60 consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 GGAGAAACAATGAGTTTGTCTCGTCATAATAGTGATGATACTGTAGTTGTAAGGTTTGTA 120 consensus_8285#1 GGAGATACAAAGAGTTTGTCTCGTCATAATAGTGATGATACTGTAGTTGTAAGGTTTGTA 120 consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 GGCTCTGCATTGGTTGGGAAATCAGAAACTGAAGATGCATGCCATCATGGCCTTGTTGAA 180 consensus_8285#1 GGCTCTGCATTGGTTGGGAAATCAGAAACTGAAGATGCATGCCATCATGGCCTTGTTGAA 180 consensus_8285#2 -------------------------------------------------------TTTTT 5 ** consensus_8285#0 CCCACTATAAACACTAAAGAGGCAATGGATGCTATCAGTAGCATGTTTTTG-GAGCCATT 239 consensus_8285#1 CCCACTATAAACACTAAAGAGGCAATGGATGCTATCAGTAGCATGTTTTTG-GAGCCATT 239 consensus_8285#2 TTTTTTTGAATCCTTTGATGCACAGCTGTTGTGTCTAGTGA-ATATTTACATGAGTTATT 64 * ** * * * ** * ** *** ** *** *** *** consensus_8285#0 GGAACCAGAAA-CTAAGCTCAAGAGGCGCTCAAATCGTGATAAACCAAGTTTTAATCAGG 298 consensus_8285#1 GGAACCAGAAA-CTAAGCTCAAGAGGCGCTCAAATCGTGATAAACCAAGTTTTAATCAGG 298 consensus_8285#2 GAAATTACANTTCTCAGTGCTTTACTGATTCANATTNCCCTGA-TAAAATTTGAAGTGTA 123 * ** * * ** ** * * *** ** * * ** *** ** consensus_8285#0 AAGCAAGTGCATTTGAGATCTTTGTCGATGAAGAT-AACCTAACAAGAGTGGACCCAGCA 357 consensus_8285#1 AAGCAAGTGCATTTGAGATATTTGTCGATGAAGATGAACCTAACAAGAGTGGACCCAGCA 358 consensus_8285#2 ACAAATGGGCATTAG-----TTTGCTGATTTANAC--TCTTGGTAAATGAGCACT----- 171 * * * ***** * **** *** * * * * ** * * ** consensus_8285#0 AACTCCAGGACAAAAACATGAAGCAGGATAATCCAAAGTTAAGTCAGCAGGCAAGCGCAT 417 consensus_8285#1 AACTCCAGGACAAGAACAAACTCCAGGACAA---GAACATGAAGCAG------------- 402 consensus_8285#2 ATCTCCTTGANTTGCAAAAAAAAAAAAAAAAAAAAAANANAAAAA--------------- 216 * **** ** * * * * ** ** * consensus_8285#0 TTGAGATCTTTGTAGATGAAGATGATCCTTACTGCAACAACCAAAATATGGTGCAGCATA 477 consensus_8285#1 ------------------------------------------------------------ consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 GGCACTTTAATAAGGAGAACACACAGGTAAATCAGAATGCAAGTGGATTTGAAATCTTTG 537 consensus_8285#1 ------------------------------------------------------------ consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 TTGATGAAAATGAGGCTCATGGCAATGGTCGTAATGCCATGAGCCATAAGAGTAGTGGAT 597 consensus_8285#1 ------------------------------------------------------------ consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 GTCCTCCAAAGCCATCGCGTGATTCAAAGCAGCAAGCCAATTTTGACTTCCAGAAACCAT 657 consensus_8285#1 ------------------------------------------------------------ consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 TCGTGGGAGGGTTTGCAATACTGCCTGATGATGAAGATGAACAGCTTGAGAAAAATGATA 717 consensus_8285#1 ------------------------------------------------------------ consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 ATGGTGTTAAGATCAATTCTGGAACTGTGCAACTAACTGATGATAAGGACACTTCACTCT 777 consensus_8285#1 ------------------------------------------------------------ consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 GTTCGAGACAAACTGATTCAAAAATAAGATGTGATGACTTACGTCCTGCAATATCTGGAC 837 consensus_8285#1 ------------------------------------------------------------ consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 TTCGAGAAGACACTGTCTTTCATAGATTTGTTGGATCAGCTGTTGTTGGAGAGCCTAAAG 897 consensus_8285#1 ------------------------------------------------------------ consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 TGGAAAATGCTTGCCACCATGGGTTGGTCGAACCAACTGTCAATTTAAAGGAGGCTATGG 957 consensus_8285#1 ------------------------------------------------------------ consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 ATGATATAAATAACATGTTTGGGATACCACTGAACTTCAAAGGTGATAAACCTAAAAACA 1017 consensus_8285#1 ------------------------------------------------------------ consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 AGAAAACCACTGCATTGTCAGAGAGAAAAGCGGCACTGCTCAGTGGTTTCTCCATATTAG 1077 consensus_8285#1 ------------------------------------------------------------ consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 CTGATGATGAACCAGGCGAAAATCCAGCAGCCCAAGTTAAACCAAGCAATGCTTCCAAAT 1137 consensus_8285#1 ------------------------------------------------------------ consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 TTGAATGTCAGAGTGGTCTCTTTGAGCCCACTATTACTACCCGCGATGTGATGGCTGAGA 1197 consensus_8285#1 ------------------------------------------------------------ consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 TCAATGACATGTTCGGAATGCCACTGGACTTCTAAGACTAGTGCTTAAATGGAACAGAAT 1257 consensus_8285#1 ------------------------------------------------------------ consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 AACTCTTTTGACAGAAGAGTTTTCCTTTACCCTCTCACTCACTCCTTGAGAGTGAGGTAA 1317 consensus_8285#1 ------------------------------------------------------------ consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 GGTTCCCAAGATGTCAGAATATGAAATGAAGTGCTATGTAGTATATTGGTGCATTCTTGA 1377 consensus_8285#1 ------------------------------------------------------------ consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 TGATAAGAAGAGCTTGGTTTTTTTTTGTTGAATCCTTTGATGCACAGCTGTTGTGTCTAG 1437 consensus_8285#1 ------------------------------------------------------------ consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 TGAATATTTACATGAGTTATTGAAATTACAATTCTCAAAGCTTTATCTGATTCATATTTC 1497 consensus_8285#1 ------------------------------------------------------------ consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 CCTGATAAAATTTGAAGTGTAGCAAATGGGCATTAGTTTGCTGATTTATACTCTTGGTAA 1557 consensus_8285#1 ------------------------------------------------------------ consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 ATGAGCACTATCTCCTTGAATTGCAAATGTATCTTACTTTTGATGCCCTGAGTTGTTTTG 1617 consensus_8285#1 ------------------------------------------------------------ consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 CTGTATCACTTAAATGAGAATTCCTTTTTCCCNCTGTTGATGTAGTTGTTGCGGATGTAA 1677 consensus_8285#1 ------------------------------------------------------------ consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 TTGATCTNTAGAATTTCCTCCAGAGTGTATTTTGGATAGCATCATCCAATNTGAATGCGG 1737 consensus_8285#1 ------------------------------------------------------------ consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 GTATTGGGTTAACTGCTGCTTAAATATGATTATATTTTCCTAAAAAAAAAAAAAAAAAAA 1797 consensus_8285#1 ------------------------------------------------------------ consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 AA 1799 consensus_8285#1 -- consensus_8285#2 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||