These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8287#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1105 fasta sequence [AAAAAAAAAAAAAACCTTACAACCGCGACGGCCGCCGACGCAGGCAGACGGCCGCCATGGCCATGCTACTCCGGCGACCCCTCCGGGCCCTCACCCTCCCGCTCCTCCGCCCCCACCTCTCCACCGCCGCCGCGGCGGAGGTGTCCCCCGCGGATCACCACCCGGACCTCCTGTCGCCGCCGTTCGGCTACCTCCCGGGCCACCCGCGGCCGGACGCGAAGCACGACGAGCTGATCCTCGCCGTGCCGCGGGCCTCCCCGGGACGCCACGTGGCGGCCAAGGAGCGGAAGGCCGGGCGGGTGCCGGCCATCGTGTTCGAGCAGGAGAACGGCCAGGAGGGGGGCAACAAGCGCCTCGTCTCCGTCCAGTCGAAGCAGATCCGCAAGCTCGTCGACCACCTCGGCCGGTCCTTCTTCCTCTCCCGCCTCTTCCGCCTCCAGGTCTGGTCCGAGCACGCCGGGCAGGGGGTGCTCATCGAGAGCGTCCGCGTCCTGCCGCGTAAGGTACACTTACATGCAGGCACTGATGAGCCTCTGAATGTGACATTCATGAGAGCCCCTTCGTCGGCACTGCTCAAAATTGATGTTCCTTTGATGTTCATTGGGGACGATGCGTCACCTGGTCTTAGGAAAGGAGCCTACTTCAATACCATAAAACGAACTGTGAAGTATCTCTGCCCTGCTGACATAGTGCCACCCTACATTGAGGTGGATTTAAGCGAGTTGGACGTGGGCCAAAAACTGTTGATGCGTGATCTAAAAGTCCATCCAGCTCTGAAGTTACTTCAGTCACCAGAACAACCCATCTGTAGTATTATAGGGTCAAGAGCACCTGAACAGAAGAAGTCAAAATAACTTTGTTCGATGTATTAACTGTTTTCACATAATAAGATCCTCGTTTTACATTCATGCTTGGGTTATTTGAGTCTTTATTGTCCTCCAAGAGTGAATACTAGGATGATTTGTAGCCTAGAGACCACTATTTTGCCTGAGGAATGAATTGGAAGCCAGATGCTGCANNTTCAGNGTAACTGTTTGATTGTTTGCCCGCTTGCAATCNAGAGTGTTGGTGGACTNCTGTGCACAAAAAANCAGNAGACCAAAAA] [+] EMBL AK072793 [AAAAAAAAAAAAAACCTTACAACCGCGACGGCCGCCGACGCAGGCAGACGGCCGCCATGGCCATGCTACTCCGGCGACCCCTCCGGGCCCTCACCCTCCCGCTCCTCCGCCCCCACCTCTCCACCGCCGCCGCGGCGGAGGTGTCCCCCGCGGATCACCACCCGGACCTCCTGTCGCCGCCGTTCGGCTACCTCCCGGGCCACCCGCGGCCGGACGCGAAGCACGACGAGCTGATCCTCGCCGTGCCGCGGGCCTCCCCGGGACGCCACGTGGCGGCCAAGGAGCGGAAGGCCGGGCGGGTGCCGGCCATCGTGTTCGAGCAGGAGAACGGCCAGGAGGGGGGCAACAAGCGCCTCGTCTCCGTCCAGTCGAAGCAGATCCGCAAGCTCGTCGACCACCTCGGCCGGTCCTTCTTCCTCTCCCGCCTCTTCCGCCTCCAGGTCTGGTCCGAGCACGCCGGGCAGGGGGTGCTCATCGAGAGCGTCCGCGTCCTGCCGCGTAAGGTACACTTACATGCAGGCACTGATGAGCCTCTGAATGTGACATTCATGAGAGCCCCTTCGTCGGCACTGCTCAAAATTGATGTTCCTTTGATGTTCATTGGGGACGATGCGTCACCTGGTCTTAGGAAAGGAGCCTACTTCAATACCATAAAACGAACTGTGAAGTATCTCTGCCCTGCTGACATAGTGCCACCCTACATTGAGGTGGATTTAAGCGAGTTGGACGTGGGCCAAAAACTGTTGATGCGTGATCTAAAAGTCCATCCAGCTCTGAAGTTACTTCAGTCACCAGAACAACCCATCTGTAGTATTATAGGGTCAAGAGCACCTGAACAGAAGAAGTCAAAATAACTTTGTTCGATGTATTAACTGTTTTCACATAATAAGATCCTCGTTTTACATTCATGCTTGGGTTATTTGAGTCTTTATTGTCCTCCAAGAGTGAATACTAGGATGATTTGTAGCCTAGAGACCACTATTTTGCCTGAGGAATGAATTGGAAGC ] [+] EMBL AU184503 [ GCCGCNGACGCAGGNAGACGGCCGCCATGGNCATGCTANTCNGGNGACCNCTCCGGGCCCTAACCCTCNCGTTCCTCCGCCCCCACCTCTCCACCGNCGCNGGGGCGGAGGTGTCCCCCGCGGATCACCACCCGGACCTCCTGTCGCCGCCGTTCGGCTACCTCCCGGGCCACCCGCGGCCGGACGCGAAGCACGACGAGCTGATCCTCGCCGTGCCGAGGGCCTCCCCGGGACGCCACGTGGCGGCCAAGGAGCGGAAGGCCGGGCGGGTGCCGGCCATCGTGTTCGAGCAGGAGAACGGCCAGGAGGGGGGCAACAAGCGCCTCGTCTCCGTCCAGTCGAAGCAGATCCG AAGCTCGTCGACCACCTCGGCCGGTC ] [+] EMBL AU184504 [ nAAGTCAAAATAACTTTGTTCNATGTATTANCTGTTTTCACATAATAAGATCCTCGTTTTACATTCATGCNTGGGTTATTTGAGTCTTTNTTGTCCTCCAAGAGTGAATNCTAGGATGATTTGTAGCCTAGAGACCACTATTTTGCCTNAGNAATGAATTGGAAGCCAGATGCTGCANNTTCAGNGTAACTGTTTGATTGTTTGCCCGCTTGCAATCNAGAGTGTTGGTGGACTNCTGTGCACAAAAAANCAGNAGACCAAAAA] consensusID : consensus_8287#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 724 fasta sequence [CCCCTACTCCCCACACGCCGCCGGCCGCCATGGCCATGCTGCTCCGGCGACCCCTCCACACCCTTCCCATCCTCCCCCTCCTCGGCCGCCACCTCTCCTCCTCCTCCGCCGCCGCGGAGGCGGTCACCGCGGACCACCACCACCACCACGACGCGGACCTCCTGTCGCCGCCGTTCGACTACCTCCCGGGCCACCCGCGGCCGGACGCGAAGCACGACGAGCTCATCCTCGCCGTGCCGCGCGCCTCCTCGGGGCGGCACGTGGCGGCCAAGGAGCGGAAGGCCGGGCGGGTGCCGGCCATCGTGTTCGAGCAGGAGAACGGGCAGGAGGGCGGCAACAAGCGGCTGGTGTCCGTGCAGTCCAAGCAGATCCGCAAGCTCGTCGACCACCTCGGCCGCTCCTTCTTCCTCTCCCGCCTCTTCCGCCTCCAGGTCTGGTCCGAGCACGCCGGCCAGGGGGAGCTCATCGAGAGCGTCCGCGTCCTTCCCCGCAAGGTACACTTACATGCAGGAACTGATGAGCCTCTGAATGTGACATTCATGAGAGCCCCTTCTTCAGCCCTACTCAAGATAGATGTTCCTTTGATGTTCATCGGAGAGGATGCATCGCCTGGTCTCAGGAAAGGGGCTTACTTCAACACCATAAAACGAACTGTCAAGTATCTGTGCCCTGCTGACATAGATGCCACCATACATNGAGGTGGATNTAAGTGAGTTGGATGTCG] [+] EMBL CB655428 [CCCCTACTCCCCACACGCCGCCGGCCGCCATGGCCATGCTGCTCCGGCGACCCCTCCACACCCTTCCCATCCTCCCCCTCCTCGGCCGCCACCTCTCCTCCTCCTCCGCCGCCGCGGAGGCGGTCACCGCGGACCACCACCACCACCACGACGCGGACCTCCTGTCGCCGCCGTTCGACTACCTCCCGGGCCACCCGCGGCCGGACGCGAAGCACGACGAGCTCATCCTCGCCGTGCCGCGCGCCTCCTCGGGGCGGCACGTGGCGGCCAAGGAGCGGAAGGCCGGGCGGGTGCCGGCCATCGTGTTCGAGCAGGAGAACGGGCAGGAGGGCGGCAACAAGCGGCTGGTGTCCGTGCAGTCCAAGCAGATCCGCAAGCTCGTCGACCACCTCGGCCGCTCCTTCTTCCTCTCCCGCCTCTTCCGCCTCCAGGTCTGGTCCGAGCACGCCGGCCAGGGGGAGCTCATCGAGAGCGTCCGCGTCCTTCCCCGCAAGGTACACTTACATGCAGGAACTGATGAGCCTCTGAATGTGACATTCATGAGAGCCCCTTCTTCAGCCCTACTCAAGATAGATGTTCCTTTGATGTTCATCGGAGAGGATGCATCGCCTGGTCTCAGGAAAGGGGCTTACTTCAACACCATAAAACGAACTGTCAAGTATCTGTG ] [+] EMBL CA753423 [ CAAGCAGATCCGCAAGCTCGTCGACCACCTCGGCCGCTCCTTCTTCCTCTCCCGCCTCTTCCGCCTCCAGGTCTGGTCCGAGCACGCCGGCCAGGGGGAGCTCATCGAGAGCGTCCGCGTCCTTCCCCGCAAGGTACACTTACATGCAGGAACTGATGAGCCTCTGAATGTGACATTCATGAGAGCCCCTTTTTCAGCCCTACTCAAGATAGATGTTCCTTTGATGTTCATCGGAGAGGATGCATCGCCTGGTCTCAGGAAAGGGGCTTACTTCAACACCATAAAACGAACTGTCCAGTATGAGTGCCCTGCTGACATAGATGCCACCATACATNGAGGTGGATNTAAGTGAGTTGGATGTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8287#0 AAAAAAAAAAAAAACCTTACAACCGCGACGGCCGCCGACGCAGGCAGACGGCCGCCATGG 60 consensus_8287#1 -------------------------CCCCTACTCCC--CACACGCCGCCGGCCGCCATGG 33 * * * ** * ** ** * ************ consensus_8287#0 CCATGCTACTCCGGCGACCCCTCCGGGCCCT---CACCCTCCCGCTCCTCCGCCCCCACC 117 consensus_8287#1 CCATGCTGCTCCGGCGACCCCTCCACACCCTTCCCATCCTCCCCCTCCTCGGCCGCCACC 93 ******* **************** **** ** ****** ****** *** ***** consensus_8287#0 TCTCCACCGCC---GCCGCGGCGGAGGTGTCCCCCGCGGATCACCACC------------ 162 consensus_8287#1 TCTCCTCCTCCTCCGCCGCCGCGGAGGCGGTCACCGCGGACCACCACCACCACCACGACG 153 ***** ** ** ***** ******* * * ******* ******* consensus_8287#0 CGGACCTCCTGTCGCCGCCGTTCGGCTACCTCCCGGGCCACCCGCGGCCGGACGCGAAGC 222 consensus_8287#1 CGGACCTCCTGTCGCCGCCGTTCGACTACCTCCCGGGCCACCCGCGGCCGGACGCGAAGC 213 ************************ *********************************** consensus_8287#0 ACGACGAGCTGATCCTCGCCGTGCCGCGGGCCTCCCCGGGACGCCACGTGGCGGCCAAGG 282 consensus_8287#1 ACGACGAGCTCATCCTCGCCGTGCCGCGCGCCTCCTCGGGGCGGCACGTGGCGGCCAAGG 273 ********** ***************** ****** **** ** **************** consensus_8287#0 AGCGGAAGGCCGGGCGGGTGCCGGCCATCGTGTTCGAGCAGGAGAACGGCCAGGAGGGGG 342 consensus_8287#1 AGCGGAAGGCCGGGCGGGTGCCGGCCATCGTGTTCGAGCAGGAGAACGGGCAGGAGGGCG 333 ************************************************* ******** * consensus_8287#0 GCAACAAGCGCCTCGTCTCCGTCCAGTCGAAGCAGATCCGCAAGCTCGTCGACCACCTCG 402 consensus_8287#1 GCAACAAGCGGCTGGTGTCCGTGCAGTCCAAGCAGATCCGCAAGCTCGTCGACCACCTCG 393 ********** ** ** ***** ***** ******************************* consensus_8287#0 GCCGGTCCTTCTTCCTCTCCCGCCTCTTCCGCCTCCAGGTCTGGTCCGAGCACGCCGGGC 462 consensus_8287#1 GCCGCTCCTTCTTCCTCTCCCGCCTCTTCCGCCTCCAGGTCTGGTCCGAGCACGCCGGCC 453 **** ***************************************************** * consensus_8287#0 AGGGGGTGCTCATCGAGAGCGTCCGCGTCCTGCCGCGTAAGGTACACTTACATGCAGGCA 522 consensus_8287#1 AGGGGGAGCTCATCGAGAGCGTCCGCGTCCTTCCCCGCAAGGTACACTTACATGCAGGAA 513 ****** ************************ ** ** ******************** * consensus_8287#0 CTGATGAGCCTCTGAATGTGACATTCATGAGAGCCCCTTCGTCGGCACTGCTCAAAATTG 582 consensus_8287#1 CTGATGAGCCTCTGAATGTGACATTCATGAGAGCCCCTTCTTCAGCCCTACTCAAGATAG 573 **************************************** ** ** ** ***** ** * consensus_8287#0 ATGTTCCTTTGATGTTCATTGGGGACGATGCGTCACCTGGTCTTAGGAAAGGAGCCTACT 642 consensus_8287#1 ATGTTCCTTTGATGTTCATCGGAGAGGATGCATCGCCTGGTCTCAGGAAAGGGGCTTACT 633 ******************* ** ** ***** ** ******** ******** ** **** consensus_8287#0 TCAATACCATAAAACGAACTGTGAAGTATCTCTGCCCTGCTGACATAG-TGCCACCCTAC 701 consensus_8287#1 TCAACACCATAAAACGAACTGTCAAGTATCTGTGCCCTGCTGACATAGATGCCACCATAC 693 **** ***************** ******** **************** ******* *** consensus_8287#0 ATTGAGGTGGATTTAAGCGAGTTGGACGTGGGCCAAAAACTGTTGATGCGTGATCTAAAA 761 consensus_8287#1 ATNGAGGTGGATNTAAGTGAGTTGGATGTCG----------------------------- 724 ** ********* **** ******** ** * consensus_8287#0 GTCCATCCAGCTCTGAAGTTACTTCAGTCACCAGAACAACCCATCTGTAGTATTATAGGG 821 consensus_8287#1 ------------------------------------------------------------ consensus_8287#0 TCAAGAGCACCTGAACAGAAGAAGTCAAAATAACTTTGTTCGATGTATTAACTGTTTTCA 881 consensus_8287#1 ------------------------------------------------------------ consensus_8287#0 CATAATAAGATCCTCGTTTTACATTCATGCTTGGGTTATTTGAGTCTTTATTGTCCTCCA 941 consensus_8287#1 ------------------------------------------------------------ consensus_8287#0 AGAGTGAATACTAGGATGATTTGTAGCCTAGAGACCACTATTTTGCCTGAGGAATGAATT 1001 consensus_8287#1 ------------------------------------------------------------ consensus_8287#0 GGAAGCCAGATGCTGCANNTTCAGNGTAACTGTTTGATTGTTTGCCCGCTTGCAATCNAG 1061 consensus_8287#1 ------------------------------------------------------------ consensus_8287#0 AGTGTTGGTGGACTNCTGTGCACAAAAAANCAGNAGACCAAAAA 1105 consensus_8287#1 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||