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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8288#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1367 fasta sequence
[TGCCTCATTTTGTGAAAATAAGAAATTTCTGTGAGCTGCTTCGCAACTGTCCTACTCAGGGGGCTACACCTGATCTAGCAACTAAGATTATGAACTTTGAGCGGATCTCATAGGATTTGTAAAGAATTCTTTTGTTGGAGTAGTTTTTTTTATTTGAAACAATGAAGGATCATCTAATGGTAAATGTTGATGATCTAATGGCGCCTGAATGCTTTGAGACCACTGGGGCAGCCAAGAATTCATCAGGGGAAGCTGCTGCGCAGGCACCCACTACAGTGCATACCTTTTTGGCAGTTGGAGAAAGCATGGCCCCTGAAGAAGAACCTCTTCTGCAGTTGGTGGAATGTCGCATTTGTCAGGAGGAAGACAGTATAAAAAATCTGGAGAGCCCATGTGCCTGTACTGGCAGTCTAAAGTATGCTCATCGGGCTTGTGTGCAACGATGGTGCAATGAGAAAGGAGATGTAACGTGTGAAATTTGTCATGAGCCATATGAACACGGTTACACTGCACCTACTAGGCCTCATCCTGATGAAACTACCATTGACATCAGTGGTGGCTGGACCATTACTGGTACTGCATTTGACTTGCGTGATCCTAGGATCCTTGCAGTTGCACAGAACCACATTATGGAAGCTGAATACGATGATTACTCTGCCACAAATGCCAGCACTGCTGCTTTTTGTCGCTCTGCTGCTCTAGTTTTAATGGCTCTGTTATTATTGAGACATGCGCTGACTCTAACTGATGAAGATGACGATGATACTTCTGCAATGTTTTCACTTTTTCTATTGCGTGCTGCTGGATTTCTGCTACCATTCTATATAATGGCTTGGGCAGTGAGTATCTTGCAGCGCCGCAGACAGCGACAGGAGGCGGCTGCCTTAGCAGCAACTGAGGTGGCATTCATTCTTCAGTCTGGGCAAGGAACCGGAGTGCATTTCACCATTGCACCGGATTCGCCGACCACA-CCGCAGCACGAGCCACAGCCTTGAAGGAGTGGCTTGGTCGGCTGCAGCCGGGCAGTGCTCGAATCGCCCAAGGCTAGAATTCATCGACGGCTGCTGCTACTGTCAAGTGCAGAAACCACAGATACATTTGTTCGCGCGTGTGTGCGCCAGTGTACTAGTAGT--AGAGTGTAAAGGCGCATTTGGTTTGGTGTCTCTCTCCCAGTTTGCGCTCCGGATTTCGCTTGTGCGTTTTGCTTGTCGGCCCGGGAGTAACGTGGTGTGTATATAAAGCAACAACGCTACTTTGATTAAGTGTTCTGTAATTGTTCCAAGATGGAACGGGCACTCTACAAGTGCAGTTTCTTCTCTGCCCATCTCGTTGTCTACTTGCTCATGTCATCTGATGCTAGTGCAAAA]
[+] EMBL CB631403 [TGCCTCATTTTGTGAAAATAAGAAATTTCTGTGAGCTGCTTCGCAACTGTCCTACTCAGGGGGCTACACCTGATCTAGCAACTAAGATTATGAACTTTGAGCGGATCTCATAGGATTTGTAAAGAATTCTTTTGTTGGAGTAGTTTTTTTTATTTGAAACAATGAAGGATCATCTAATGGTAAATGTTGATGATCTAATGGCGCCTGAATGCTTTGAGACCACTGGGGCAGCCAAGAATTCATCAGGGGAAGCTGCTGCGCAGGCACCCACTACAGTGCATACCTTTTTGGCAGTTGGAGAAAGCATGGCCCCTGAAGAAGAACCTCTTCTGCAGTTGGTGGAATGTCGCATTTGTCAGGAGGAAGACAGTATAAAAAATCTGGAGAGCCCATGTGCCTGTACTGGCAGTCTAAAGTATGCTCATCGGGCTTGTGTGCAACGATGGTGCAATGAGAAAGGAGATGTAACGTGTGAAATTTGTCATGAGCCATATGAACACGGTTACACTGCACCTACTAGGCCTCATCCTGATGAAACTACCATTGACATCAGTGGTGGCTGGACCATTACTGGTACTGCATTTGACTTGCGTGATCCTAGGATCCTTGCAGTTGCACAGAACCACATTATGGAAGCTGAATACGATGATTACTCTGCCACAAATGCCAGCACTGCTGCTTTTTGTCGCTCTGCTGCTCTAGTTTTAATGGCTCTGTTATTATTGAGACATGCGCTGACTCTAACTGATGAAGATGACGATGATACTTCTGCAATGTTTTCACTTTTTCTATTGCGTGCTGCTGGATTTCTGCTACCATTCTATATA ]
[-] EMBL CB631404 [ GTTGCACAGAACCACATTATGGAAGCTGAATACGATGATTACTCTGCCACAAATGCCAGCACTGCTGCTTTTTGTCGCTCTGCTGCTCTAGTTTTAATGGCTCTGTTATTATTGAGACATGCGCTGACTCTAACTGATGAAGATGACGATGATACTTCTGCAATGTTTTCACTTTTTCTATTGCGTGCTGCTGGATTTCTGCTACCATTCTATATAATGGCTTGGGCAGTGAGTATCTTGCAGCGCCGCAGACAGCGACAGGAGGCGGCTGCCTTAGCAGCAACTGAGGTGGCATTCATTTTTCAGTCTGGGCAAGGAACCGGAGTGCATTTCACCATTGCACCGGATTCGCCGACCACA CCGCAGCACGAGCCACACCCTTGAAGGAGTGGCTTGGTCGGCTGCAGCCGGGCAGTGCTCGAATCGCCCAAGGCTAGAATTCATCGACGGCTGCTGCTACTGTCAAGTGCAGAAACCACAGATACATTTGTTCGCGCGTGTGTGCGCCAGTGTACTAGTAGT AGAGTGTAAAGGCGCATTTGGTTTGGTGTCTCTCTCCCAGTTTGCGCTCCGGATTTCGCTTGTGCGTTTTGCTTGTCGGCCCGGGAGTAACGTGGTGTGTATATAAAGCAACAACGCTACTTTGATTAAGTGTTCTGTAATTGTTCCAAGATGGAAC ]
[+] EMBL AK062467 [ ACTTCTGCAATGTTTTCACTTTTTCTATTGCGTGCTGCTGGATTTCTGCTACCATTCTATATAATGGCTTGGGCAGTGAGTATCTTGCAGCGCCGCAGACAGCGACAGGAGGCGGCTGCCTTAGCAGCAACTGAGGTGGCATTCATTCTTCAGTCTGGGCAAGGAACCGGAGTGCATTTCACCATTGCACCGGATTCGCCGACCACA CCGCAGCACGAGCCACAGCCTTGAAGGAGTGGCTTGGTCGGCTGCAGCCGGGCAGTGCTCGAATCGCCCAAGGCTAGAATTCATCGACGGCTGCTGCTACTGTCAAGTGCAGAAACCACAGATACATTTGTT CGCGTGTGTGTGCCAGTGTACTAGTAGTAGAGAGTGTAAAGGCGCATTTGGTTTGGTGTCTCTCTCCCAGTTTGCGCTCCGGATTTCGCTTGTGCGTTTTGCTTGTCGGCCCGGGAGTAACGTGGTGTGTATATAAAGCAACAACGCTACTTTGATTAAGTGTTCTGTAATTGTTCCAAGATGGAACGGGCACTCTACAAGTGCAGTTTCTTCTCTGCCCATCTCGTTGTCTACTTGCTCATGTCATCTGATGCTAGTGCAAAA]
[+] EMBL BI802699 [ CCGCAGACAGCGACAGGAGGCGGCTGCCTTAGCAGCAACTGAGGTGGCATTCATTCTTCAGTCTGGGCAAGGAACCGGAGTGCATTTCACCATTGCACCGGATTCGCCGACCACACCCGCAGCACGAGCCACAGCCTTGAAGGAGTGGCTTGGTCGGCTGCAGCCGGGCAGTGCTCGAATCGCCCAAGGCTAGAATTCATCGACGGCTGCTGCTACTGTCAAGTGCAGAAACCACAGATACATTTGTTCGCGCGTGTGTGCGCCAGTGTACTAGTAGT AGAGTGTAAAGGCGCATTTGGTTTGGTGTCTCTCTCCCAGTTTGCGCTCCGGATTTCGCTTGTGCGTTTTGCTTGTCGGCCCGGGAGTAACGTGGTGTGTATATAAAGCAACAACGCTACTTTGATTAAGTGTTCTGTAATTGTTCCAAGATGGAACGGGCACTCTACAAGTGCAGTTTCTTCTCTGCCCAaaaaaaaaa ]
consensusID : consensus_8288#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 718 fasta sequence
[CGTCTCCGCTCCATGCGCCAGCGCTGATCTCCATCTCGCGAGGAGGGCAGAGCAGGGCGCCGATCCTCAATCTCGCGACCGGAGCAGGGGAGGGGTTCCTGCATCCTGAAAGGTGGAGCTCAAATCATTAGTGCCCCATTTATCTCGTACCAAGGACTTTGGTGCCTCATTTTGTGAAAATAAGAAATTTCTGTGAGCTGCTTCGCAACTGTCCTACTCAGGGGGCTACACCTGATCTAGCAACTAAGATTATGAACTTTGAGCGGATCTCATAGGATTTGTAAAGAATTCTTTTGTTGGAGTAGTTTTTTTTATTTGAAACAATGAAGGATCATCTAATGGTAAATGTTGATGATCTAATGGCGCCTGAATGCTTTGAGACCACTGGGGCAGCCAAGAATTCATCAGGGGAAGCCGCTGCGCAGGCACCCACTACAGTGCATACCTTTTTGGCAGTTGGAGAAAGCATGGCCCCTGAAGAAGAACCTCTTCTGCAGTTGGTGGAATGTCGCATTTGTCAGGAGGAAGACAGTATAAAAAATCTGGAGAGCCCATGTGCCTGTACTGGCAGTCTAAAGGAGCAATCCTGAATTTGACCTGTTGGAATGACATTACTGCAGCCATATGAACACGGTTACACTGCACCTACTANGCCTCATCCTGATGAAACTACCATTGACATCAGTGGTGGCTGGACCATTACTGGTACTGCATTTGA]
[+] EMBL CB663828 [CGTCTCCGCTCCATGCGCCAGCGCTGATCTCCATCTCGCGAGGAGGGCAGAGCAGGGCGCCGATCCTCAATCTCGCGACCGGAGCAGGGGAGGGGTTCCTGCATCCTGAAAGGTGGAGCTCAAATCATTAGTGCCCCATTTATCTCGTACCAAGGACTTTGGTGCCTCATTTTGTGAAAATAAGAAATTTCTGTGAGCTGCTTCGCAACTGTCCTACTCAGGGGGCTACACCTGATCTAGCAACTAAGATTATGAACTTTGAGCGGATCTCATAGGATTTGTAAAGAATTCTTTTGTTGGAGTAGTTTTTTTTATTTGAAACAATGAAGGATCATCTAATGGTAAATGTTGATGATCTAATGGCGCCTGAATGCTTTGAGACCACTGGGGCAGCCAAGAATTCATCAGGGGAAGCCGCTGCGCAGGCACCCACTACAGTGCATACCTTTTTGGCAGTTGGAGAAAGCATGGCCCCTGAAGAAGAACCTCTTCTGCAGTTGGTGGAATGTCGCATTTGTCAGGAGGAAGACAGTATAAAAAATCTGGAGAGCCCATGTGCCTGTACTGGCAGTCTAAAGGAGCAATCCTGAATTTGACCTGTTGGAATGACATTACTGCAGCCATATGAACACGGTTACACTGCACCTACTANGCCTCATCCTGATGAAACTACCATTGACATCAGTGGTGGCTGGACCATTACTGGTACTGCATTTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8288#0 ------------------------------------------------------------
consensus_8288#1 CGTCTCCGCTCCATGCGCCAGCGCTGATCTCCATCTCGCGAGGAGGGCAGAGCAGGGCGC 60
consensus_8288#0 ------------------------------------------------------------
consensus_8288#1 CGATCCTCAATCTCGCGACCGGAGCAGGGGAGGGGTTCCTGCATCCTGAAAGGTGGAGCT 120
consensus_8288#0 ------------------------------------------TGCCTCATTTTGTGAAAA 18
consensus_8288#1 CAAATCATTAGTGCCCCATTTATCTCGTACCAAGGACTTTGGTGCCTCATTTTGTGAAAA 180
******************
consensus_8288#0 TAAGAAATTTCTGTGAGCTGCTTCGCAACTGTCCTACTCAGGGGGCTACACCTGATCTAG 78
consensus_8288#1 TAAGAAATTTCTGTGAGCTGCTTCGCAACTGTCCTACTCAGGGGGCTACACCTGATCTAG 240
************************************************************
consensus_8288#0 CAACTAAGATTATGAACTTTGAGCGGATCTCATAGGATTTGTAAAGAATTCTTTTGTTGG 138
consensus_8288#1 CAACTAAGATTATGAACTTTGAGCGGATCTCATAGGATTTGTAAAGAATTCTTTTGTTGG 300
************************************************************
consensus_8288#0 AGTAGTTTTTTTTATTTGAAACAATGAAGGATCATCTAATGGTAAATGTTGATGATCTAA 198
consensus_8288#1 AGTAGTTTTTTTTATTTGAAACAATGAAGGATCATCTAATGGTAAATGTTGATGATCTAA 360
************************************************************
consensus_8288#0 TGGCGCCTGAATGCTTTGAGACCACTGGGGCAGCCAAGAATTCATCAGGGGAAGCTGCTG 258
consensus_8288#1 TGGCGCCTGAATGCTTTGAGACCACTGGGGCAGCCAAGAATTCATCAGGGGAAGCCGCTG 420
******************************************************* ****
consensus_8288#0 CGCAGGCACCCACTACAGTGCATACCTTTTTGGCAGTTGGAGAAAGCATGGCCCCTGAAG 318
consensus_8288#1 CGCAGGCACCCACTACAGTGCATACCTTTTTGGCAGTTGGAGAAAGCATGGCCCCTGAAG 480
************************************************************
consensus_8288#0 AAGAACCTCTTCTGCAGTTGGTGGAATGTCGCATTTGTCAGGAGGAAGACAGTATAAAAA 378
consensus_8288#1 AAGAACCTCTTCTGCAGTTGGTGGAATGTCGCATTTGTCAGGAGGAAGACAGTATAAAAA 540
************************************************************
consensus_8288#0 ATCTGGAGAGCCCATGTGCCTGTACTGGCAGTCTAAAGTATGCTCATCGGGCTTGTGTGC 438
consensus_8288#1 ATCTGGAGAGCCCATGTGCCTGTACTGGCAGTCTAAAGGAG------CAATCCTGAATTT 594
************************************** * * * ** *
consensus_8288#0 AACGATGGTGCAATGAGAAAGGAGATGTAACGTGTGAAATTTGTCATGAGCCATATGAAC 498
consensus_8288#1 GACC-TGTTGGAATGACA----------------------TTACTGC-AGCCATATGAAC 630
** ** ** ***** * ** ************
consensus_8288#0 ACGGTTACACTGCACCTACTAGGCCTCATCCTGATGAAACTACCATTGACATCAGTGGTG 558
consensus_8288#1 ACGGTTACACTGCACCTACTANGCCTCATCCTGATGAAACTACCATTGACATCAGTGGTG 690
********************* **************************************
consensus_8288#0 GCTGGACCATTACTGGTACTGCATTTGACTTGCGTGATCCTAGGATCCTTGCAGTTGCAC 618
consensus_8288#1 GCTGGACCATTACTGGTACTGCATTTGA-------------------------------- 718
****************************
consensus_8288#0 AGAACCACATTATGGAAGCTGAATACGATGATTACTCTGCCACAAATGCCAGCACTGCTG 678
consensus_8288#1 ------------------------------------------------------------
consensus_8288#0 CTTTTTGTCGCTCTGCTGCTCTAGTTTTAATGGCTCTGTTATTATTGAGACATGCGCTGA 738
consensus_8288#1 ------------------------------------------------------------
consensus_8288#0 CTCTAACTGATGAAGATGACGATGATACTTCTGCAATGTTTTCACTTTTTCTATTGCGTG 798
consensus_8288#1 ------------------------------------------------------------
consensus_8288#0 CTGCTGGATTTCTGCTACCATTCTATATAATGGCTTGGGCAGTGAGTATCTTGCAGCGCC 858
consensus_8288#1 ------------------------------------------------------------
consensus_8288#0 GCAGACAGCGACAGGAGGCGGCTGCCTTAGCAGCAACTGAGGTGGCATTCATTCTTCAGT 918
consensus_8288#1 ------------------------------------------------------------
consensus_8288#0 CTGGGCAAGGAACCGGAGTGCATTTCACCATTGCACCGGATTCGCCGACCACACCGCAGC 978
consensus_8288#1 ------------------------------------------------------------
consensus_8288#0 ACGAGCCACAGCCTTGAAGGAGTGGCTTGGTCGGCTGCAGCCGGGCAGTGCTCGAATCGC 1038
consensus_8288#1 ------------------------------------------------------------
consensus_8288#0 CCAAGGCTAGAATTCATCGACGGCTGCTGCTACTGTCAAGTGCAGAAACCACAGATACAT 1098
consensus_8288#1 ------------------------------------------------------------
consensus_8288#0 TTGTTCGCGCGTGTGTGCGCCAGTGTACTAGTAGTAGAGTGTAAAGGCGCATTTGGTTTG 1158
consensus_8288#1 ------------------------------------------------------------
consensus_8288#0 GTGTCTCTCTCCCAGTTTGCGCTCCGGATTTCGCTTGTGCGTTTTGCTTGTCGGCCCGGG 1218
consensus_8288#1 ------------------------------------------------------------
consensus_8288#0 AGTAACGTGGTGTGTATATAAAGCAACAACGCTACTTTGATTAAGTGTTCTGTAATTGTT 1278
consensus_8288#1 ------------------------------------------------------------
consensus_8288#0 CCAAGATGGAACGGGCACTCTACAAGTGCAGTTTCTTCTCTGCCCATCTCGTTGTCTACT 1338
consensus_8288#1 ------------------------------------------------------------
consensus_8288#0 TGCTCATGTCATCTGATGCTAGTGCAAAA 1367
consensus_8288#1 -----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||