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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_829#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2432 fasta sequence
[AAAAACAAATCAAAACCCTAACACATCCCAGCGGCCTCCTCCGCCATGCCATCGCCGCCGCCGCCGCCGCAGCCGTCGCCGCCGGAGCTGCCGATCTCGGAGCACGAGGACGAGATCATGGCTGCGGTGGAGGCGAACCCAGTGGTGGTGGTGATCGGTGAGACCGGCTCGGGGAAGAGCACCCAGCTCTCCCAGATACTCCACCGCCGCGGCTACACCCGCCGTGGTGCCATAGCCGTCACCCAGCCCCGTCGCGTCGCCACCGTCTCGGTTTCCAGGAGAGTAGCACAGGAGCTCAGTGTTCCCCTTGGTGATGAAGTTGGTTATGCCATCCGATTTGAAGATAGAACTTCAGAGAAAACCTGCATAAAGTACCTGACAGATGGTGTTCTTCTGCGCGAAAGCCTTTCAGACCCTGAGTTGAAGCAGTATTCAGTAATTATTCTGGATGAAGCTCACGAGCGCAGTTTAAACACTGATATTCTTCTAGGTTTAATGAAACGATTAATTAAGGATCGAGCTTCAGATTTGAAAGTTCTGATCACTTCTGCTACTCTTGATGGTTTGAAAGTGTCAAAGTTCTTCTCTGGATGTCCTGTGTTGAATATCCCTGGAACCTTATTCCCTGTGGAGAAGTTTTACAGCACAGAACATCCAACGAATTATATAGAATCTTCTCTGAGAACCGCTATAGATATTCATGTTAAGGAATCCCCTGGTGATGTCTTAATATTCATGACAGGAAAGGATGACATTGATAAGATGGTATCAAAATTGGAGGAAAGAATTCAAAATCTAGAGGAAGGTTCTTGTATGGATGCTCTTGTCCTTCCACTTCACGGTTCTTTGCCACCTGAACAACAGGTCCGGGTATTTGCTCCAGCACCTCCAAATTGTCGACGCTTCATTGTTGCAACAAATGTAGCTGAAACATCTCTTACTGTGGATGGTGTTGTGTTTGTGATTGATTGTGGTTATGTAAAGCAACGCCAGTATAACCCATCGTCTGGAATGTATTCACTTGACGTAGTTCAGATTAGCAGAGTGCAGGCTGACCAGCGAGCTGGGCGAGCTGGAAGAACTCGGCCTGGGAAGTGCTATAGGTTATACCCAATTTCCATTTATCAAAAGGAGTTTCTCGAGGCTACAATCCCAGAAATCCAGCGTTCTTCTCTTGCCGGAAGTGTTTTGTATCTAAAATCGTTAGATCTACCTGATATCAACATACTGAAGTTTGATTTCCTTGACCCACCATCTCGTGAATCATTAGAAGATGCTTTGAGGCAATTATACCTCATCGATGCAATTGATGAAAATGGGCAAATAACAGATGTAGGACGAATTATGGCAGAGCTCCCTCTTGAGCCTTCTCTTTCAAGGACTTTGATTGAAGCAAACGAATTGGGATGTCTATCTCAGGCATTGACTGTTGCTGCAGTTCTGTCAGCTGAAATCACATTCCGGTCAACTAGAAGCAAAGACATGGAGGGAAAGAGGAAAAGGCAAGAGCTTCCTGATGGTTCTGGTTGGGGCGACCATATACAGTTGCTTCAGATATTTAAAAGTTGGGATCGAACAGGCTATGATCCAAGATGGTGCTCAGATCATGAGTTGCAGGTGAGAGGCATGAAATTCAGCAAAGATGTGAGAAACCAATTAAGTCAGATTATTCAAAAAATTGCAAAAGGTTCAACAGATGTGCAAGCAAAGAAAGAGCGGAAGAGTGACCCTGATTATAGAAAATTAAGGAGAGCTCTATGTGTTGGATATGGTAACCAGCTCGCTGAGAGGATGCTGCATCACAATGGTTATCATACGGTTGGATACAGGGCACAACTAGTGCAGGTGCATCCATTTTCCGTACTGGAAGGTGATGAATACGGGAAACTGCCGGTATATGTTGTCTACCATGAGTTAATAAATACTACTCGTCCTTTCATGAGAAATGTTAGTGCCGTGGATCAGTCTTGGGTTAAACCTATATTGAAGAAGCTTGAAAGATTGGACATGAACAAATTAAGTGGTGGTTCCAGCGGATCGAAAGATCCAGAACCTCTAGAGGATAAACAAGTAAGCTCCCCAAAGAAAGCAATGGATGTTAAACAATCTGACGTGGACAGTAAAATACAGGCAGCTCGCGAGCGCTACCTGGCTCGAAAAGGCAAGAAATGACAGTATGTGCTTAACCAAGCTATTCTTTGGAGGGTAGGTCCCATACGTAATGAGAGGAACAGGGAGTGATAACATGACAATCTTCAGTATCATATTTCCCTACCTCTTATTACTTACCATAGCAGAAGTACTGTAGGTACAAGCAGAGACATTTATGTGAGTCTAAATTTCATCATATCCATCCATTTGTCAAGCTTGAGAACTTTGTAACCGTTTAAAGGCCTGTTTGGCTGGTGTCTTGGTGCCATATGCCTGAGGAT]
[+] EMBL AK101122 [AAAAACAAATCAAAACCCTAACACATCCCAGCGGCCTCCTCCGCCATGCCATCGCCGCCGCCGCCGCCGCAGCCGTCGCCGCCGGAGCTGCCGATCTCGGAGCACGAGGACGAGATCATGGCTGCGGTGGAGGCGAACCCAGTGGTGGTGGTGATCGGTGAGACCGGCTCGGGGAAGAGCACCCAGCTCTCCCAGATACTCCACCGCCGCGGCTACACCCGCCGTGGTGCCATAGCCGTCACCCAGCCCCGTCGCGTCGCCACCGTCTCGGTTTCCAGGAGAGTAGCACAGGAGCTCAGTGTTCCCCTTGGTGATGAAGTTGGTTATGCCATCCGATTTGAAGATAGAACTTCAGAGAAAACCTGCATAAAGTACCTGACAGATGGTGTTCTTCTGCGCGAAAGCCTTTCAGACCCTGAGTTGAAGCAGTATTCAGTAATTATTCTGGATGAAGCTCACGAGCGCAGTTTAAACACTGATATTCTTCTAGGTTTAATGAAACGATTAATTAAGGATCGAGCTTCAGATTTGAAAGTTCTGATCACTTCTGCTACTCTTGATGGTTTGAAAGTGTCAAAGTTCTTCTCTGGATGTCCTGTGTTGAATATCCCTGGAACCTTATTCCCTGTGGAGAAGTTTTACAGCACAGAACATCCAACGAATTATATAGAATCTTCTCTGAGAACCGCTATAGATATTCATGTTAAGGAATCCCCTGGTGATGTCTTAATATTCATGACAGGAAAGGATGACATTGATAAGATGGTATCAAAATTGGAGGAAAGAATTCAAAATCTAGAGGAAGGTTCTTGTATGGATGCTCTTGTCCTTCCACTTCACGGTTCTTTGCCACCTGAACAACAGGTCCGGGTATTTGCTCCAGCACCTCCAAATTGTCGACGCTTCATTGTTGCAACAAATGTAGCTGAAACATCTCTTACTGTGGATGGTGTTGTGTTTGTGATTGATTGTGGTTATGTAAAGCAACGCCAGTATAACCCATCGTCTGGAATGTATTCACTTGACGTAGTTCAGATTAGCAGAGTGCAGGCTGACCAGCGAGCTGGGCGAGCTGGAAGAACTCGGCCTGGGAAGTGCTATAGGTTATACCCAATTTCCATTTATCAAAAGGAGTTTCTCGAGGCTACAATCCCAGAAATCCAGCGTTCTTCTCTTGCCGGAAGTGTTTTGTATCTAAAATCGTTAGATCTACCTGATATCAACATACTGAAGTTTGATTTCCTTGACCCACCATCTCGTGAATCATTAGAAGATGCTTTGAGGCAATTATACCTCATCGATGCAATTGATGAAAATGGGCAAATAACAGATGTAGGACGAATTATGGCAGAGCTCCCTCTTGAGCCTTCTCTTTCAAGGACTTTGATTGAAGCAAACGAATTGGGATGTCTATCTCAGGCATTGACTGTTGCTGCAGTTCTGTCAGCTGAAATCACATTCCGGTCAACTAGAAGCAAAGACATGGAGGGAAAGAGGAAAAGGCAAGAGCTTCCTGATGGTTCTGGTTGGGGCGACCATATACAGTTGCTTCAGATATTTAAAAGTTGGGATCGAACAGGCTATGATCCAAGATGGTGCTCAGATCATGAGTTGCAGGTGAGAGGCATGAAATTCAGCAAAGATGTGAGAAACCAATTAAGTCAGATTATTCAAAAAATTGCAAAAGGTTCAACAGATGTGCAAGCAAAGAAAGAGCGGAAGAGTGACCCTGATTATAGAAAATTAAGGAGAGCTCTATGTGTTGGATATGGTAACCAGCTCGCTGAGAGGATGCTGCATCACAATGGTTATCATACGGTTGGATACAGGGCACAACTAGTGCAGGTGCATCCATTTTCCGTACTGGAAGGTGATGAATACGGGAAACTGCCGGTATATGTTGTCTACCATGAGTTAATAAATACTACTCGTCCTTTCATGAGAAATGTTAGTGCCGTGGATCAGTCTTGGGTTAAACCTATATTGAAGAAGCTTGAAAGATTGGACATGAACAAATTAAGTGGTGGTTCCAGCGGATCGAAAGATCCAGAACCTCTAGAGGATAAACAAGTAAGCTCCCCAAAGAAAGCAATGGATGTTAAACAATCTGACGTGGACAGTAAAATACAGGCAGCTCGCGAGCGCTACCTGGCTCGAAAAGGCAAGAAATGACAGTATGTGCTTAACCAAGCTATTCTTTGGAGGGTAGGTCCCATACGTAATGAGAGGAACAGGGAGTGATAACATGACAATCTTCAGTATCATATTTCCCTACCTCTTATTACTTACCATAGCAGAAGTACTGTAGGTACAAGCAGAGACATTTATGTGAGTCTAAATTTCATCATATCCATCCATTTGTCAAGCTTGAGAACTTTGTAACCGTTTAAAGGCCTGTTTGGCTGGTGTCTTGGTGCCATATGCCTGAGGAT]
consensusID : consensus_829#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence
[TTTCAACGGGCCCACTTACGTGCAGCGGCATCCCCTTTCCCGTACTGAGAAGGTGAATCAACCCGGGAACCTCGCCGGTATTATCTGTTTACCCGTCAGGTAATAAATACTACTACTCCTCTCCTTAGAAAATGTTTGTCCCGTGGATCATTCCTGGGGTTACGCCTATATTGAAGAAGCCTGAAAGATTGGCCATGAACCAATTAAGTGGTGGTTCCAGCGGATCGAAAGATCCAGAACCTCTAGAGGATAAACAAGTAAGCCCCCAAAGAAAGCAATGGATGTTAAACAATCTGACGTGGACAGTAAAATACAGGCAGCTCGCGAGCGCTACCTGGCTCGAAAAGGCAAGAAATGCCAGTATGTGCTTAACCCAGCTATTCTTTGGAGGGTAGGTCCCATACGTAATGAGAGGAACAGGGAGTGATAACATGACAATCTTCAGTATCATATTTCCCTACCTCTTATTACTTACCATAGCAGAAGTACTGTAGGTACAAGCAGAGACATTTATGTGAGTCTAAATTTCATCATATCCATCCATTTGTCAAGCTTGAGAACTTTGTAACCGTTTAAAGGCCTGTTTGGCTGGTGTCTTGGTGCCATATGCCTGAGGATTTTGCATGCCAGAGAGCCACCCGAGATGATGAATTTTGCCTAGTCAGGCAGCCTGTCAAAAAAA]
[-] EMBL CA759083 [TTTCAACGGGCCCACTTACGTGCAGCGGCATCCCCTTTCCCGTACTGAGAAGGTGAATCAACCCGGGAACCTCGCCGGTATTATCTGTTTACCCGTCAGGTAATAAATACTACTACTCCTCTCCTTAGAAAATGTTTGTCCCGTGGATCATTCCTGGGGTTACGCCTATATTGAAGAAGCCTGAAAGATTGGCCATGAACCAATTAAGTGGTGGTTCCAGCGGATCGAAAGATCCAGAACCTCTAGAGGATAAACAAGTAAGCCCCCAAAGAAAGCAATGGATGTTAAACAATCTGACGTGGACAGTAAAATACAGGCAGCTCGCGAGCGCTACCTGGCTCGAAAAGGCAAGAAATGCCAGTATGTGCTTAACCCAGCTATTCTTTGGAGGGTAGGTCCCATACGTAATGAGAGGAACAGGGAGTGATAACATGACAATCTTCAGTATCATATTTCCCTACCTCTTATTACTTACCATAGCAGAAGTACTGTAGGTACAAGCAGAGACATTTATGTGAGTCTAAATTTCATCATATCCATCCATTTGTCAAGCTTGAGAACTTTGTAACCGTTTAAAGGCCTGTTTGGCTGGTGTCTTGGTGCCATATGCCTGAGGATTTTGCATGCCAGAGAGCCACCCGAGATGATGAATTTTGCCTAGTCAGGCAGCCTGTCAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_829#0 AAAAACAAATCAAAACCCTAACACATCCCAGCGGCCTCCTCCGCCATGCCATCGCCGCCG 60
consensus_829#1 ------------------------------------------------------------
consensus_829#0 CCGCCGCCGCAGCCGTCGCCGCCGGAGCTGCCGATCTCGGAGCACGAGGACGAGATCATG 120
consensus_829#1 ------------------------------------------------------------
consensus_829#0 GCTGCGGTGGAGGCGAACCCAGTGGTGGTGGTGATCGGTGAGACCGGCTCGGGGAAGAGC 180
consensus_829#1 ------------------------------------------------------------
consensus_829#0 ACCCAGCTCTCCCAGATACTCCACCGCCGCGGCTACACCCGCCGTGGTGCCATAGCCGTC 240
consensus_829#1 ------------------------------------------------------------
consensus_829#0 ACCCAGCCCCGTCGCGTCGCCACCGTCTCGGTTTCCAGGAGAGTAGCACAGGAGCTCAGT 300
consensus_829#1 ------------------------------------------------------------
consensus_829#0 GTTCCCCTTGGTGATGAAGTTGGTTATGCCATCCGATTTGAAGATAGAACTTCAGAGAAA 360
consensus_829#1 ------------------------------------------------------------
consensus_829#0 ACCTGCATAAAGTACCTGACAGATGGTGTTCTTCTGCGCGAAAGCCTTTCAGACCCTGAG 420
consensus_829#1 ------------------------------------------------------------
consensus_829#0 TTGAAGCAGTATTCAGTAATTATTCTGGATGAAGCTCACGAGCGCAGTTTAAACACTGAT 480
consensus_829#1 ------------------------------------------------------------
consensus_829#0 ATTCTTCTAGGTTTAATGAAACGATTAATTAAGGATCGAGCTTCAGATTTGAAAGTTCTG 540
consensus_829#1 ------------------------------------------------------------
consensus_829#0 ATCACTTCTGCTACTCTTGATGGTTTGAAAGTGTCAAAGTTCTTCTCTGGATGTCCTGTG 600
consensus_829#1 ------------------------------------------------------------
consensus_829#0 TTGAATATCCCTGGAACCTTATTCCCTGTGGAGAAGTTTTACAGCACAGAACATCCAACG 660
consensus_829#1 ------------------------------------------------------------
consensus_829#0 AATTATATAGAATCTTCTCTGAGAACCGCTATAGATATTCATGTTAAGGAATCCCCTGGT 720
consensus_829#1 ------------------------------------------------------------
consensus_829#0 GATGTCTTAATATTCATGACAGGAAAGGATGACATTGATAAGATGGTATCAAAATTGGAG 780
consensus_829#1 ------------------------------------------------------------
consensus_829#0 GAAAGAATTCAAAATCTAGAGGAAGGTTCTTGTATGGATGCTCTTGTCCTTCCACTTCAC 840
consensus_829#1 ------------------------------------------------------------
consensus_829#0 GGTTCTTTGCCACCTGAACAACAGGTCCGGGTATTTGCTCCAGCACCTCCAAATTGTCGA 900
consensus_829#1 ------------------------------------------------------------
consensus_829#0 CGCTTCATTGTTGCAACAAATGTAGCTGAAACATCTCTTACTGTGGATGGTGTTGTGTTT 960
consensus_829#1 ------------------------------------------------------------
consensus_829#0 GTGATTGATTGTGGTTATGTAAAGCAACGCCAGTATAACCCATCGTCTGGAATGTATTCA 1020
consensus_829#1 ------------------------------------------------------------
consensus_829#0 CTTGACGTAGTTCAGATTAGCAGAGTGCAGGCTGACCAGCGAGCTGGGCGAGCTGGAAGA 1080
consensus_829#1 ------------------------------------------------------------
consensus_829#0 ACTCGGCCTGGGAAGTGCTATAGGTTATACCCAATTTCCATTTATCAAAAGGAGTTTCTC 1140
consensus_829#1 ------------------------------------------------------------
consensus_829#0 GAGGCTACAATCCCAGAAATCCAGCGTTCTTCTCTTGCCGGAAGTGTTTTGTATCTAAAA 1200
consensus_829#1 ------------------------------------------------------------
consensus_829#0 TCGTTAGATCTACCTGATATCAACATACTGAAGTTTGATTTCCTTGACCCACCATCTCGT 1260
consensus_829#1 ------------------------------------------------------------
consensus_829#0 GAATCATTAGAAGATGCTTTGAGGCAATTATACCTCATCGATGCAATTGATGAAAATGGG 1320
consensus_829#1 ------------------------------------------------------------
consensus_829#0 CAAATAACAGATGTAGGACGAATTATGGCAGAGCTCCCTCTTGAGCCTTCTCTTTCAAGG 1380
consensus_829#1 ------------------------------------------------------------
consensus_829#0 ACTTTGATTGAAGCAAACGAATTGGGATGTCTATCTCAGGCATTGACTGTTGCTGCAGTT 1440
consensus_829#1 ------------------------------------------------------------
consensus_829#0 CTGTCAGCTGAAATCACATTCCGGTCAACTAGAAGCAAAGACATGGAGGGAAAGAGGAAA 1500
consensus_829#1 ------------------------------------------------------------
consensus_829#0 AGGCAAGAGCTTCCTGATGGTTCTGGTTGGGGCGACCATATACAGTTGCTTCAGATATTT 1560
consensus_829#1 ------------------------------------------------------------
consensus_829#0 AAAAGTTGGGATCGAACAGGCTATGATCCAAGATGGTGCTCAGATCATGAGTTGCAGGTG 1620
consensus_829#1 ------------------------------------------------------------
consensus_829#0 AGAGGCATGAAATTCAGCAAAGATGTGAGAAACCAATTAAGTCAGATTATTCAAAAAATT 1680
consensus_829#1 ------------------------------------------------------------
consensus_829#0 GCAAAAGGTTCAACAGATGTGCAAGCAAAGAAAGAGCGGAAGAGTGACCCTGATTATAGA 1740
consensus_829#1 ------------------------------------------------------------
consensus_829#0 AAATTAAGGAGAGCTCTATGTGTTGGATATGGTAACCAGCTCGCTGAGAGGATGCTGCAT 1800
consensus_829#1 ------------------------------------------------------------
consensus_829#0 CACAATGGTTATCATACGGTTGGATACAGGGCACAACTA-GTGCAGGTGCATCCATTTTC 1859
consensus_829#1 ---------------------TTTCAACGGGCCCACTTACGTGCAGCGGCATCCCCTTTC 39
* **** ** ** ****** ****** ****
consensus_829#0 C-GTACTG-GAAGGTGA-TGAATACGGGAAACT-GCCGGTATATGTTGTCTACC-ATGAG 1914
consensus_829#1 CCGTACTGAGAAGGTGAATCAACCCGGGAACCTCGCCGGTATTATCTGTTTACCCGTCAG 99
* ****** ******** * ** ****** ** ******** *** **** * **
consensus_829#0 TTAATAAATACTACTCGTCCTTTCATGAGAAA-TGTTAGTGCCGTGGATCAGTCTTGGG- 1972
consensus_829#1 GTAATAAATACTACTACTCCTCTCCTTAGAAAATGTTTGTCCCGTGGATCATTCCTGGGG 159
************** **** ** * ***** **** ** ********** ** ****
consensus_829#0 TTAAACCTATATTGAAGAAGCTTGAAAGATTGGACATGAACAAATTAAGTGGTGGTTCCA 2032
consensus_829#1 TTACGCCTATATTGAAGAAGCCTGAAAGATTGGCCATGAACCAATTAAGTGGTGGTTCCA 219
*** **************** *********** ******* ******************
consensus_829#0 GCGGATCGAAAGATCCAGAACCTCTAGAGGATAAACAAGTAAGCTCCCCAAAGAAAGCAA 2092
consensus_829#1 GCGGATCGAAAGATCCAGAACCTCTAGAGGATAAACAAGTAAGC-CCCCAAAGAAAGCAA 278
******************************************** ***************
consensus_829#0 TGGATGTTAAACAATCTGACGTGGACAGTAAAATACAGGCAGCTCGCGAGCGCTACCTGG 2152
consensus_829#1 TGGATGTTAAACAATCTGACGTGGACAGTAAAATACAGGCAGCTCGCGAGCGCTACCTGG 338
************************************************************
consensus_829#0 CTCGAAAAGGCAAGAAATGACAGTATGTGCTTAACCAAGCTATTCTTTGGAGGGTAGGTC 2212
consensus_829#1 CTCGAAAAGGCAAGAAATGCCAGTATGTGCTTAACCCAGCTATTCTTTGGAGGGTAGGTC 398
******************* **************** ***********************
consensus_829#0 CCATACGTAATGAGAGGAACAGGGAGTGATAACATGACAATCTTCAGTATCATATTTCCC 2272
consensus_829#1 CCATACGTAATGAGAGGAACAGGGAGTGATAACATGACAATCTTCAGTATCATATTTCCC 458
************************************************************
consensus_829#0 TACCTCTTATTACTTACCATAGCAGAAGTACTGTAGGTACAAGCAGAGACATTTATGTGA 2332
consensus_829#1 TACCTCTTATTACTTACCATAGCAGAAGTACTGTAGGTACAAGCAGAGACATTTATGTGA 518
************************************************************
consensus_829#0 GTCTAAATTTCATCATATCCATCCATTTGTCAAGCTTGAGAACTTTGTAACCGTTTAAAG 2392
consensus_829#1 GTCTAAATTTCATCATATCCATCCATTTGTCAAGCTTGAGAACTTTGTAACCGTTTAAAG 578
************************************************************
consensus_829#0 GCCTGTTTGGCTGGTGTCTTGGTGCCATATGCCTGAGGAT-------------------- 2432
consensus_829#1 GCCTGTTTGGCTGGTGTCTTGGTGCCATATGCCTGAGGATTTTGCATGCCAGAGAGCCAC 638
****************************************
consensus_829#0 --------------------------------------------
consensus_829#1 CCGAGATGATGAATTTTGCCTAGTCAGGCAGCCTGTCAAAAAAA 682
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||