These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8298#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1054 fasta sequence [GCGGGATCGCGGCGG-ACCTGAACCGGGGGTTTCCGGCGATCTTTCAGGGGGTGGGGGTGGAGGAGACGGCGGTGGAAGGGGATGGAGGAGCCCAGCCGGCGGCCGGGCTGCAGGAGTTCCAGTTCTTCGGCCACGACGACCACGACAGCGTCGCGTGGCTCTTCAACGACCCGGCGCCGCCCGGCGGGACGGACCACCAGCTTCACCGCCAAACCGCGCCCATGGCGGTCGGCAACGGCGCGGCGGCGGCGCAGCAGCGGCAGGCGTTCGACGCGTACGCGCAGTACCAGCCGGGGCACGGGCTCACGTTCGACGTGCCGCTCACCCGAGGCGAGGCCGCCGCCGCGGTGCTCGAGGCCAGCCTCGGCCTCGGCGGCGCCGGCGCCGGCGGCAGGAACCCGGCGACGTCGAGCAGCACAATCATGTCCTTCTGTGGGAGCACGTTCACTGACGCCGTGAGCTCCATCCCGAAAGATCACGCGGCGGCGGCGGCGGTCGTTGCCAACGGCGGCCTGAGCGGCGGCGGCGGCGACCCGGCGATGGACCGGGAGGCGAAGGTGATGCGGTACAAGGAGAAGAGGAAGCGGAGGCGATACGAGAAGCAGATCCGGTACGCCTCGCGCAAGGCCTACGCCGAGATGCGGCCGCGCGTGAAGGGCCGCTTCGCCAAGGTGCCCGACGGCGAGCTGGACGGCGCGACACCGCCGCCGCCGTCCTCCGCCGCCGGCGGCGGCTACGAGCCCGGCCGGCTCGACCTCGGATGGTTCCGTTCGTAGCTAGCAGCCTAGCACTATAATAGCAGATCATTATTTCTCTCTTTGTATACGTACTCTACGTACATAGGCCAAGCATGCATTGACTAGCTAGGCTATTGGTTGAAAAGTTTAAGGTTTAATTAAGGTAGATATATATGGCAACAAGTATATATATGTGATTTACTTGTCTTACTGAAGAACTAGCATGGTGACCCGCGCAGATTGCTCGGCTAGCATCATTATATTTTCTCTCATATAATAGCATATATGTTTTCTCAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK109732 [GCGGGATCGCGGCGG ACCTGAACCGGGGGTTTCCGGCGATCTTTCAGGGGGTGGGGGTGGAGGAGACGGCGGTGGAAGGGGATGGAGGAGCCCAGCCGGCGGCCGGGCTGCAGGAGTTCCAGTTCTTCGGCCACGACGACCACGACAGCGTCGCGTGGCTCTTCAACGACCCGGCGCCGCCCGGCGGGACGGACCACCAGCTTCACCGCCAAACCGCGCCCATGGCGGTCGGCAACGGCGCGGCGGCGGCGCAGCAGCGGCAGGCGTTCGACGCGTACGCGCAGTACCAGCCGGGGCACGGGCTCACGTTCGACGTGCCGCTCACCCGAGGCGAGGCCGCCGCCGCGGTGCTCGAGGCCAGCCTCGGCCTCGGCGGCGCCGGCGCCGGCGGCAGGAACCCGGCGACGTCGAGCAGCACAATCATGTCCTTCTGTGGGAGCACGTTCACTGACGCCGTGAGCTCCATCCCGAAAGATCACGCGGCGGCGGCGGCGGTCGTTGCCAACGGCGGCCTGAGCGGCGGCGGCGGCGACCCGGCGATGGACCGGGAGGCGAAGGTGATGCGGTACAAGGAGAAGAGGAAGCGGAGGCGATACGAGAAGCAGATCCGGTACGCCTCGCGCAAGGCCTACGCCGAGATGCGGCCGCGCGTGAAGGGCCGCTTCGCCAAGGTGCCCGACGGCGAGCTGGACGGCGCGACACCGCCGCCGCCGTCCTCCGCCGCCGGCGGCGGCTACGAGCCCGGCCGGCTCGACCTCGGATGGTTCCGTTCGTAGCTAGCAGCCTAGCACTATAATAGCAGATCATTATTTCTCTCTTTGTATACGTACTCTACGTACATAGGCCAAGCATGCATTGACTAGCTAGGCTATTGGTTGAAAAGTTTAAGGTT ] [+] EMBL AU173953 [ GCGGCGGCACCTGAACCGGGGGTTTCCGGCGATCTTTCAGGGGGTGGGGGTGGAGGAGACGGCGGTGGAAGGGGATGGAGGAGCCCAGCCGGCGGCCGGGCTGCAGGAGTTCCAGTTCTTCGGCCACGACGACCACGACAGCGTCGCGTGGCTCTTCAACGACCCGGCGCCGCCCGGCGGGACGGACCACCAGCTTCACCGCCAAACCGCGCCCATGGCGGTCGGCAACGGCGCGGCGGCGGCGCAGCAGCGGCAGGCGTTCGACGCGTACGCGCAGTACCAGCCGGGGCACGGGCTCACGTTCGACGTGCCGNTCACCCGAGGCGAGGCCGCCGCCGCGGTGCTCG ] [+] EMBL AU075686 [ GCCGCTTCGCCAAGGTGCCCGACGGCGAGCTGGACGGCGCGACACCGCCGCCGCCGTCCTCCGCCGCCGGCGGCGGCTACGAGCCCGGCCGGCTCGACCTCGGATGGTTCCGTTCGTAGCTAGCAGCCTAGCACTATAATAGCAGATCATTATTTCTCTCTTTGTATACGTACTCTACGTACATAGGCCAAGCATGCATTGACTAGCTAGGCTATTGGTTGAAAAGTTTAAGGTTTAATTAAGGTAGATATATATGGCAACAAGTATATATATGTGATTTACTTGTCTTACTGAAGAACTAGCATGGTGACCCGCGCAGATTGCTCGGCTAGCATCATTATATTTTCTCTCATATAATAGCATATATGTTTTCTCAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C99401 [ GGCCAAGCATGCATTNACTAGCTAGGCTATTGGNTNAAAAGTTTAAGGTTTAATTNAGGTAGATATATATGGNAACAAGTATATATATGTGATTTACTTGTCTTACTNAAGAACTAGCATGGTNACCCNCGCAGATTNCTCGGCTAGCATCATTATATTTTCTCTCATATAATAGCATATATGTTTTCTNAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_8298#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence [GACCCCACCGCGCCGGCTCCAGGAGTTCCAGTTCGTTCGCCACGACGACCACGACAGCGTCGCGTGGCTCTTTCAACGACCCGGCGCCGCCCGGCGGGACGGACCACCAGCTTCACCAGCCAAACCGCGCCCATGCAGGTCGGCAACGGCGCGGCGGCGGCAGCAGCAGCGGCAGGCGTTCGACGCGTACGCCAGTACCACGCCGGGGCACGGGCTCACGTTCGACAGTGCCGCATCACCACGAGGCGAGCCGCCCCGCGGTGCTCGAGGCCACGCCTCGGCCTCGGCGGCGCCGGCCCGGCGGCAGGAACCCGGCGACGTCGACAGCACAATCATGTCCTTCTGTGGGAGCACGTTCACTGACCCGTGAGCTCCATCCCGAAAGATCACGCGGCGCGCGCGTCGTTNCCAACGCGCCTGAGCGCGGCGCGGCGACCCGGCGATGGACCGGGAGGCGAAGGTGATCCGGTACAAGGAGAAGAGGAACCGAGCNATACGAGAACCAGATCCGTACCCTCGCCCAAGCTACCCGAGATCGCCCTTAGAGATCCAGCTACTACGCGCATCAC] [-] EMBL BM422138 [GACCCCACCGCGCCGGCTCCAGGAGTTCCAGTTCGTTCGCCACGACGACCACGACAGCGTCGCGTGGCTCTTTCAACGACCCGGCGCCGCCCGGCGGGACGGACCACCAGCTTCACCAGCCAAACCGCGCCCATGCAGGTCGGCAACGGCGCGGCGGCGGCAGCAGCAGCGGCAGGCGTTCGACGCGTACGCCAGTACCACGCCGGGGCACGGGCTCACGTTCGACAGTGCCGCATCACCACGAGGCGAGCCGCCCCGCGGTGCTCGAGGCCACGCCTCGGCCTCGGCGGCGCCGGCCCGGCGGCAGGAACCCGGCGACGTCGACAGCACAATCATGTCCTTCTGTGGGAGCACGTTCACTGACCCGTGAGCTCCATCCCGAAAGATCACGCGGCGCGCGCGTCGTTNCCAACGCGCCTGAGCGCGGCGCGGCGACCCGGCGATGGACCGGGAGGCGAAGGTGATCCGGTACAAGGAGAAGAGGAACCGAGCNATACGAGAACCAGATCCGTACCCTCGCCCAAGCTACCCGAGATCGCCCTTAGAGATCCAGCTACTACGCGCATCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8298#0 GCGGGATCGCGGCGGACCTGAACCGGGGGTTTCCGGCGATCTTTCAGGGGGTGGGGGTGG 60 consensus_8298#1 ------------------------------------------------------------ consensus_8298#0 AGGAGACGGCGGTGGAAGGGGATGGAGGAGCCCAGCCGGCGGCCGGGCTGCAGGAGTTCC 120 consensus_8298#1 ---------------------------GACCCCACC--GCGCC--GGCTCCAGGAGTTCC 29 ** **** * *** * **** ********** consensus_8298#0 AGTTCTTCGGCCACGACGACCACGACAGCGTCGCGTGGCTCTT-CAACGACCCGGCGCCG 179 consensus_8298#1 AGTTCGTTCGCCACGACGACCACGACAGCGTCGCGTGGCTCTTTCAACGACCCGGCGCCG 89 ***** * ********************************** **************** consensus_8298#0 CCCGGCGGGACGGACCACCAGCTTCACC-GCCAAACCGCGCCCATGGCGGTCGGCAACGG 238 consensus_8298#1 CCCGGCGGGACGGACCACCAGCTTCACCAGCCAAACCGCGCCCATGCAGGTCGGCAACGG 149 **************************** ***************** ************ consensus_8298#0 CGCGGCGGCGGC-GCAGCAGCGGCAGGCGTTCGACGCGTACGCGCAGTACCA-GCCGGGG 296 consensus_8298#1 CGCGGCGGCGGCAGCAGCAGCGGCAGGCGTTCGACGCGTACGC-CAGTACCACGCCGGGG 208 ************ ****************************** ******** ******* consensus_8298#0 CACGGGCTCACGTTCGAC-GTGCCGC-TCACC-CGAGGCGAGGCCGCCGCCGCGGTGCTC 353 consensus_8298#1 CACGGGCTCACGTTCGACAGTGCCGCATCACCACGAGGCGAG-CCGCC-CCGCGGTGCTC 266 ****************** ******* ***** ********* ***** *********** consensus_8298#0 GAGGCCA-GCCTCGGCCTCGGCGGCGCCGGCGCCGGCGGCAGGAACCCGGCGACGTCGAG 412 consensus_8298#1 GAGGCCACGCCTCGGCCTCGGCGGCGCCGGC-CCGGCGGCAGGAACCCGGCGACGTCGA- 324 ******* *********************** *************************** consensus_8298#0 CAGCACAATCATGTCCTTCTGTGGGAGCACGTTCACTGACGCCGTGAGCTCCATCCCGAA 472 consensus_8298#1 CAGCACAATCATGTCCTTCTGTGGGAGCACGTTCACTGAC-CCGTGAGCTCCATCCCGAA 383 **************************************** ******************* consensus_8298#0 AGATCACGCGGCGGCGGCGGCGGTCGTTGCCAACGGCGGCCTGAGCGGCGGCGGCGGCGA 532 consensus_8298#1 AGATCACGCGGCG----CGCGCGTCGTTNCCAACGC--GCCTGAGCG-CGGCG-CGGCGA 435 ************* ** ****** ****** ********* ***** ****** consensus_8298#0 CCCGGCGATGGACCGGGAGGCGAAGGTGATGCGGTACAAGGAGAAGAGGAAGCGGAGGCG 592 consensus_8298#1 CCCGGCGATGGACCGGGAGGCGAAGGTGATCCGGTACAAGGAGAAGAGGAACCGA--GCN 493 ****************************** ******************** ** ** consensus_8298#0 ATACGAGAAGCAGATCCGGTACGCCTCGCGCAAGGCCTACGCCGAGATGCGGCCGCGCGT 652 consensus_8298#1 ATACGAGAACCAGATCCG-TAC-CCTCGCCCAAG--CTAC-CCGAGAT-----CGCCCTT 543 ********* ******** *** ****** **** **** ******* *** * * consensus_8298#0 GAAGGGCCGCTTCGCCAAGGTGCCCGACGGCGAGCTGGACGGCGCGACACCGCCGCCGCC 712 consensus_8298#1 AGAGATCCAGCT--ACTACGCGCATCAC-------------------------------- 569 ** ** * * * * ** ** consensus_8298#0 GTCCTCCGCCGCCGGCGGCGGCTACGAGCCCGGCCGGCTCGACCTCGGATGGTTCCGTTC 772 consensus_8298#1 ------------------------------------------------------------ consensus_8298#0 GTAGCTAGCAGCCTAGCACTATAATAGCAGATCATTATTTCTCTCTTTGTATACGTACTC 832 consensus_8298#1 ------------------------------------------------------------ consensus_8298#0 TACGTACATAGGCCAAGCATGCATTGACTAGCTAGGCTATTGGTTGAAAAGTTTAAGGTT 892 consensus_8298#1 ------------------------------------------------------------ consensus_8298#0 TAATTAAGGTAGATATATATGGCAACAAGTATATATATGTGATTTACTTGTCTTACTGAA 952 consensus_8298#1 ------------------------------------------------------------ consensus_8298#0 GAACTAGCATGGTGACCCGCGCAGATTGCTCGGCTAGCATCATTATATTTTCTCTCATAT 1012 consensus_8298#1 ------------------------------------------------------------ consensus_8298#0 AATAGCATATATGTTTTCTCAAAAAAAAAAAAAAAAAAAAAA 1054 consensus_8298#1 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||