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Oryza sativa
cluster # 83 cluster # 83       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_83#0 length = 1085 sequences # 1  
consensus_83#1 length = 903 sequences # 1  

consensusID : consensus_83#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1085
fasta sequence
                              [GATCCGAGAAGACGAGTACGGCGGCGGCGGCGTCGGGTTCGAGCCGACGGAGGACGAGCTGATGCTCCACTTCCTCCGTCCGCAGCTGCGCGGGTTCGCGCCGCGCGTGGCGGGCGCCGTGGTGGAGGCCGACCCCTGCGGCGCGGCGCCGTGGGAGCTCCTGGCGCGGCACGGGCGGCGTGAGGTACGCGTCCATACCCGCACCCCCTCTCGCCCTTCTTCTGTTCTTCTGCGTCGGCGAGTGCTCCCGCCCCCCGCAGGTATCCCATTGCGTCTCGCCCCCCCCCGCGTTGTGTGTTTCGCGGCCATCCGTCTCCCTAACTAGGTCCTTCACGGGACCGCCATCCTCGCCGGCCCCGTCTCCTCCAGGCTCGTTCGCCCCCACGCGACTACGCGCCGATCCTCCTATGGTAGCGAGTGTGTTCTCTCAGCCGTCTCTGACCTGCCTTCCAGGCGATCTGCGCGGCCCCGGGTCCTGGTTGTGCGTGCTCGCCGGCCGCGGTCGACGCGACGCTAGTATGTCGGAGTCCCGCGGAACGCAGTCGGGCTCGGCCGTCGCACTGGACGTTGGAGAGTCCATACTAGGTGGGAGCGCGAACTTTGCGGGGCGCGTCGCGCGTGGGTCCCCGCTACACTCCTCGTGCCACTCGGCGGTCCGAGCGCTTCCCCAGAGGTGTGGAGGGCTCTTTACTCCGTACGAGTGTCGTGCATGCTAGTCGTTAGTTCCGTGCGAGGGTGTGATGTTGTGCGTTCGTGTATGCGGCTTGGCCCAGTGCACGTCCCTTGCTGTCTCACAATCGCGCCCCGCGTTTGTAGCCATGGCCGGTTAGCCTTGCTAACCCGAGAGGGTTCGTCCCTCCTCCACCAGTCATGCACCTGCCATATCGTGACTTCGGCGTCTCCGTTTCCGCGGCTTCAGCGCCGGTGCGTCGTAGCGTCGGCAGTCGGACGCTCCCGGTACCCCGGACGTGAGTTTCTACACAGTCGCTGAATACTGCGTTCCTTGCCCGCGCACGGATGTTCCCGCAGGGCTAAGGTTGCGGGGGGCTGGCGTGCGTATATTTTGTGGGTGTTATCGTGGCTTT]

[+] EMBL BE039737             [GATCCGAGAAGACGAGTACGGCGGCGGCGGCGTCGGGTTCGAGCCGACGGAGGACGAGCTGATGCTCCACTTCCTCCGTCCGCAGCTGCGCGGGTTCGCGCCGCGCGTGGCGGGCGCCGTGGTGGAGGCCGACCCCTGCGGCGCGGCGCCGTGGGAGCTCCTGGCGCGGCACGGGCGGCGTGAGGTACGCGTCCATACCCGCACCCCCTCTCGCCCTTCTTCTGTTCTTCTGCGTCGGCGAGTGCTCCCGCCCCCCGCAGGTATCCCATTGCGTCTCGCCCCCCCCCGCGTTGTGTGTTTCGCGGCCATCCGTCTCCCTAACTAGGTCCTTCACGGGACCGCCATCCTCGCCGGCCCCGTCTCCTCCAGGCTCGTTCGCCCCCACGCGACTACGCGCCGATCCTCCTATGGTAGCGAGTGTGTTCTCTCAGCCGTCTCTGACCTGCCTTCCAGGCGATCTGCGCGGCCCCGGGTCCTGGTTGTGCGTGCTCGCCGGCCGCGGTCGACGCGACGCTAGTATGTCGGAGTCCCGCGGAACGCAGTCGGGCTCGGCCGTCGCACTGGACGTTGGAGAGTCCATACTAGGTGGGAGCGCGAACTTTGCGGGGCGCGTCGCGCGTGGGTCCCCGCTACACTCCTCGTGCCACTCGGCGGTCCGAGCGCTTCCCCAGAGGTGTGGAGGGCTCTTTACTCCGTACGAGTGTCGTGCATGCTAGTCGTTAGTTCCGTGCGAGGGTGTGATGTTGTGCGTTCGTGTATGCGGCTTGGCCCAGTGCACGTCCCTTGCTGTCTCACAATCGCGCCCCGCGTTTGTAGCCATGGCCGGTTAGCCTTGCTAACCCGAGAGGGTTCGTCCCTCCTCCACCAGTCATGCACCTGCCATATCGTGACTTCGGCGTCTCCGTTTCCGCGGCTTCAGCGCCGGTGCGTCGTAGCGTCGGCAGTCGGACGCTCCCGGTACCCCGGACGTGAGTTTCTACACAGTCGCTGAATACTGCGTTCCTTGCCCGCGCACGGATGTTCCCGCAGGGCTAAGGTTGCGGGGGGCTGGCGTGCGTATATTTTGTGGGTGTTATCGTGGCTTT]


>consensus_83#0 GATCCGAGAAGACGAGTACGGCGGCGGCGGCGTCGGGTTCGAGCCGACGGAGGACGAGCT GATGCTCCACTTCCTCCGTCCGCAGCTGCGCGGGTTCGCGCCGCGCGTGGCGGGCGCCGT GGTGGAGGCCGACCCCTGCGGCGCGGCGCCGTGGGAGCTCCTGGCGCGGCACGGGCGGCG TGAGGTACGCGTCCATACCCGCACCCCCTCTCGCCCTTCTTCTGTTCTTCTGCGTCGGCG AGTGCTCCCGCCCCCCGCAGGTATCCCATTGCGTCTCGCCCCCCCCCGCGTTGTGTGTTT CGCGGCCATCCGTCTCCCTAACTAGGTCCTTCACGGGACCGCCATCCTCGCCGGCCCCGT CTCCTCCAGGCTCGTTCGCCCCCACGCGACTACGCGCCGATCCTCCTATGGTAGCGAGTG TGTTCTCTCAGCCGTCTCTGACCTGCCTTCCAGGCGATCTGCGCGGCCCCGGGTCCTGGT TGTGCGTGCTCGCCGGCCGCGGTCGACGCGACGCTAGTATGTCGGAGTCCCGCGGAACGC AGTCGGGCTCGGCCGTCGCACTGGACGTTGGAGAGTCCATACTAGGTGGGAGCGCGAACT TTGCGGGGCGCGTCGCGCGTGGGTCCCCGCTACACTCCTCGTGCCACTCGGCGGTCCGAG CGCTTCCCCAGAGGTGTGGAGGGCTCTTTACTCCGTACGAGTGTCGTGCATGCTAGTCGT TAGTTCCGTGCGAGGGTGTGATGTTGTGCGTTCGTGTATGCGGCTTGGCCCAGTGCACGT CCCTTGCTGTCTCACAATCGCGCCCCGCGTTTGTAGCCATGGCCGGTTAGCCTTGCTAAC CCGAGAGGGTTCGTCCCTCCTCCACCAGTCATGCACCTGCCATATCGTGACTTCGGCGTC TCCGTTTCCGCGGCTTCAGCGCCGGTGCGTCGTAGCGTCGGCAGTCGGACGCTCCCGGTA CCCCGGACGTGAGTTTCTACACAGTCGCTGAATACTGCGTTCCTTGCCCGCGCACGGATG TTCCCGCAGGGCTAAGGTTGCGGGGGGCTGGCGTGCGTATATTTTGTGGGTGTTATCGTG GCTTT



consensusID : consensus_83#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 903
fasta sequence
                              [CACACACACCCCTACCCGTCTCTGTTCATCTCCACATCTTGTCTTCTCGCTGTTGACTTCGAGCGGAGACTAGACTAGCTACTACTCGGAATGGGGAAGGAGATGAATCTGATCCGAGAAGACGAGTACGGCGGCGGCGGCGTCGGGTTCGAGCCGACGGAGGACGAGCTGATGCTCCACTTCCTCCGTCCGCAGCTGCGCGGGTTCGCGCCGCGCGTGGCGGGCGCCGTGGTGGAGGCCGACCCCTGCGGCGCGGCGCCGTGGGAGCTCCTGGCGCGGCACGGGAGGCGGGAGGAGGGGTTCTTCTTCTCGGCGCGCGCGCGGAGGAAGCCCTCGGTGCGGCGGACCGTGGCGGGCTGCGGCGGCGGCGGTGGCGGCGGTGGCGCGTGGATGCACAGCTCCACCAAGAACGGGCAGTCCGTGACCGACCTCGGCGTGGTGGTGCGGTGGTGCAGGATCAACTACTGCTTCTACGTGCGCGGCGAGATGGGGCAGCAGCGGAGCACCGGGTGGATGATGGCCGAGTACGAGATCACCGACCCGCGGTGCTACCGCCGCGCCGACGACGGCGAGGAGGACGACTTCTGGGTTCTCTGCCATGTCAGGAAGAGCTCGAGGCCCCAAGCCGCCAAGATCTCTCCAGCCAAGCCAGCACGGCGGCGCAAGCCCGCCGCCGCCGCCGCCGCGGATGTCCGGGCTGCGTGATCCGGCCGACGGCGGAGATCACGAGGTTTGCCTCGCGTTGGGATTCGACTTCGGTTATACTTTTGCTTTGGAATTGTGTTCCTTTGCTTTATTCCTCCTCTAGCATCTGCCCATACATTCCGTGTGATGAACACTGCGAATCAAATGGGACGTTTAAGATGTTGTTGTTGTACTGATAGCGTGATTGAATTCATGGCC]

[+] EMBL AK071060             [CACACACACCCCTACCCGTCTCTGTTCATCTCCACATCTTGTCTTCTCGCTGTTGACTTCGAGCGGAGACTAGACTAGCTACTACTCGGAATGGGGAAGGAGATGAATCTGATCCGAGAAGACGAGTACGGCGGCGGCGGCGTCGGGTTCGAGCCGACGGAGGACGAGCTGATGCTCCACTTCCTCCGTCCGCAGCTGCGCGGGTTCGCGCCGCGCGTGGCGGGCGCCGTGGTGGAGGCCGACCCCTGCGGCGCGGCGCCGTGGGAGCTCCTGGCGCGGCACGGGAGGCGGGAGGAGGGGTTCTTCTTCTCGGCGCGCGCGCGGAGGAAGCCCTCGGTGCGGCGGACCGTGGCGGGCTGCGGCGGCGGCGGTGGCGGCGGTGGCGCGTGGATGCACAGCTCCACCAAGAACGGGCAGTCCGTGACCGACCTCGGCGTGGTGGTGCGGTGGTGCAGGATCAACTACTGCTTCTACGTGCGCGGCGAGATGGGGCAGCAGCGGAGCACCGGGTGGATGATGGCCGAGTACGAGATCACCGACCCGCGGTGCTACCGCCGCGCCGACGACGGCGAGGAGGACGACTTCTGGGTTCTCTGCCATGTCAGGAAGAGCTCGAGGCCCCAAGCCGCCAAGATCTCTCCAGCCAAGCCAGCACGGCGGCGCAAGCCCGCCGCCGCCGCCGCCGCGGATGTCCGGGCTGCGTGATCCGGCCGACGGCGGAGATCACGAGGTTTGCCTCGCGTTGGGATTCGACTTCGGTTATACTTTTGCTTTGGAATTGTGTTCCTTTGCTTTATTCCTCCTCTAGCATCTGCCCATACATTCCGTGTGATGAACACTGCGAATCAAATGGGACGTTTAAGATGTTGTTGTTGTACTGATAGCGTGATTGAATTCATGGCC]


>consensus_83#1 CACACACACCCCTACCCGTCTCTGTTCATCTCCACATCTTGTCTTCTCGCTGTTGACTTC GAGCGGAGACTAGACTAGCTACTACTCGGAATGGGGAAGGAGATGAATCTGATCCGAGAA GACGAGTACGGCGGCGGCGGCGTCGGGTTCGAGCCGACGGAGGACGAGCTGATGCTCCAC TTCCTCCGTCCGCAGCTGCGCGGGTTCGCGCCGCGCGTGGCGGGCGCCGTGGTGGAGGCC GACCCCTGCGGCGCGGCGCCGTGGGAGCTCCTGGCGCGGCACGGGAGGCGGGAGGAGGGG TTCTTCTTCTCGGCGCGCGCGCGGAGGAAGCCCTCGGTGCGGCGGACCGTGGCGGGCTGC GGCGGCGGCGGTGGCGGCGGTGGCGCGTGGATGCACAGCTCCACCAAGAACGGGCAGTCC GTGACCGACCTCGGCGTGGTGGTGCGGTGGTGCAGGATCAACTACTGCTTCTACGTGCGC GGCGAGATGGGGCAGCAGCGGAGCACCGGGTGGATGATGGCCGAGTACGAGATCACCGAC CCGCGGTGCTACCGCCGCGCCGACGACGGCGAGGAGGACGACTTCTGGGTTCTCTGCCAT GTCAGGAAGAGCTCGAGGCCCCAAGCCGCCAAGATCTCTCCAGCCAAGCCAGCACGGCGG CGCAAGCCCGCCGCCGCCGCCGCCGCGGATGTCCGGGCTGCGTGATCCGGCCGACGGCGG AGATCACGAGGTTTGCCTCGCGTTGGGATTCGACTTCGGTTATACTTTTGCTTTGGAATT GTGTTCCTTTGCTTTATTCCTCCTCTAGCATCTGCCCATACATTCCGTGTGATGAACACT GCGAATCAAATGGGACGTTTAAGATGTTGTTGTTGTACTGATAGCGTGATTGAATTCATG GCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_83#0      ------------------------------------------------------------
consensus_83#1      CACACACACCCCTACCCGTCTCTGTTCATCTCCACATCTTGTCTTCTCGCTGTTGACTTC 60
                                                                                

consensus_83#0      --------------------------------------------------GATCCGAGAA 10
consensus_83#1      GAGCGGAGACTAGACTAGCTACTACTCGGAATGGGGAAGGAGATGAATCTGATCCGAGAA 120
                                                                      **********

consensus_83#0      GACGAGTACGGCGGCGGCGGCGTCGGGTTCGAGCCGACGGAGGACGAGCTGATGCTCCAC 70
consensus_83#1      GACGAGTACGGCGGCGGCGGCGTCGGGTTCGAGCCGACGGAGGACGAGCTGATGCTCCAC 180
                    ************************************************************

consensus_83#0      TTCCTCCGTCCGCAGCTGCGCGGGTTCGCGCCGCGCGTGGCGGGCGCCGTGGTGGAGGCC 130
consensus_83#1      TTCCTCCGTCCGCAGCTGCGCGGGTTCGCGCCGCGCGTGGCGGGCGCCGTGGTGGAGGCC 240
                    ************************************************************

consensus_83#0      GACCCCTGCGGCGCGGCGCCGTGGGAGCTCCTGGCGCGGCACGGGCGGCGTGAGGTACGC 190
consensus_83#1      GACCCCTGCGGCGCGGCGCCGTGGGAGCTCCTGGCGCGGCACGGGAGGCGGGAGGAGGGG 300
                    ********************************************* **** ****   * 

consensus_83#0      GTCCATACCCGCACCCCCTCTCG-------CCCTTCTTCTGTTCTTCTGCGTCGGCGAGT 243
consensus_83#1      TTCTTCTTCTCGGCGCGCGCGCGGAGGAAGCCCTCGGTGCGGCGGACCGTGGCGGGCTGC 360
                     **     *    * * * * **       ****   *  *     * * * ***   * 

consensus_83#0      GCTCCCGCCCCCCGCAG--GTATCCCATTGCGTCTCGCCCCCCCCCGCGTTGTGTGTTTC 301
consensus_83#1      GGCGGCGGCGGTGGCGGCGGTGGCGCGTGGATGCACAGCTCCACCAAGAACGGGCAGTCC 420
                    *    ** *    ** *  **  * * * *   * *  * ** **      * *   * *

consensus_83#0      GCGGCCATCC--GTCTCCCTAACTAGGTCCTTCACGG--GACCGCCATCCTCGCCGGCCC 357
consensus_83#1      GTGACCGACCTCGGCGTGGTGGTGCGGTGGTGCAGGATCAACTACTGCTTCTACGTGCGC 480
                    * * **  **  * *    *     ***  * ** *    **  *        *  ** *

consensus_83#0      CGTCTCCTCCAGGCTCGTTCGCCC-CCACGCGACTACGCGCCGATCCTCCTATGGTAGCG 416
consensus_83#1      GGCGAGATGGGGCAGCAGCGGAGCACCGGGTGGATGATGGCCGAG--TACGAGATCACCG 538
                     *     *   *   *    *  * **  * *  *    *****   * * *    * **

consensus_83#0      AGT-GTGTTCTCTCAGCCGTCTCTGACCTGCCTTCCAGGCGATCTGCGCGGCCCCGGGTC 475
consensus_83#1      ACCCGCGGTGCTACCGCCGCGCCGACGACGGCGAGGAGGACGACTTCTGGGTTCTCTGCC 598
                    *   * * *    * ****   *      * *    ***    ** *  **  *   * *

consensus_83#0      CTGGTTGTGCGTGCTCGCCGGCCGCGGTCGACGCGACGCTAGTATGTCGG--AGTCCCGC 533
consensus_83#1      ATGTCAGGAAGAGCTCGAGGCCCCAAGCCGCCAAGATCTCTCCAGCCAAGCCAGCACGGC 658
                     **   *   * *****  * **   * ** *  **       *     *  **  * **

consensus_83#0      GGAACGCAGTCGGGCTCGGCCGTCGCACTGGACGTTGGAGAGTCCATACTAGGTGGGAGC 593
consensus_83#1      GGCGCA-AGCCCGCCGCCGCCGCCGCCGCGGATGTCCG-GGCTGCGTGATCCGGCCGACG 716
                    **  *  ** * * * * **** ***   *** **  * *  * * *  *  *   **  

consensus_83#0      GCGAACTTTGCGGGGCGCGTCGCGCGT-GGGTCCCCGCTACACTCCTCGTGCCACTCGGC 652
consensus_83#1      GCGGAGATCACGAGGTTTGCCTCGCGTTGGGATTCGACTTCGGTTATACTTTTGCTTTGG 776
                    *** *  *  ** **   * * ***** ***   *  ** *  *  *  *    **  * 

consensus_83#0      GGTCCGAGCGCTTCCCCAGAGGTGTGGAGGGCTCTTTACTCCGTACGAGTGTCGTGCATG 712
consensus_83#1      AATTGTGTTCCTTTGCTTTATTCCTCCTCTAGCATCTGC-CCATACATTCCGTGTG-ATG 834
                      *       ***  *   *    *         * * * ** ***       *** ***

consensus_83#0      CTAGTCGTTAGTTCCGTGCGAGGGT-GTGATGTTGTGCGTTCGTGTATGCGGCTTGGCCC 771
consensus_83#1      AACACTGCGAATCAAATGGGACGTTTAAGATGTTGT-TGTT-GTACTGATAGCGTGATTG 892
                          *  * *    ** ** * *   ********  *** **       ** **    

consensus_83#0      AGTGCACGTCCCTTGCTGTCTCACAATCGCGCCCCGCGTTTGTAGCCATGGCCGGTTAGC 831
consensus_83#1      AATTCATGGCC------------------------------------------------- 903
                    * * ** * **                                                 

consensus_83#0      CTTGCTAACCCGAGAGGGTTCGTCCCTCCTCCACCAGTCATGCACCTGCCATATCGTGAC 891
consensus_83#1      ------------------------------------------------------------
                                                                                

consensus_83#0      TTCGGCGTCTCCGTTTCCGCGGCTTCAGCGCCGGTGCGTCGTAGCGTCGGCAGTCGGACG 951
consensus_83#1      ------------------------------------------------------------
                                                                                

consensus_83#0      CTCCCGGTACCCCGGACGTGAGTTTCTACACAGTCGCTGAATACTGCGTTCCTTGCCCGC 1011
consensus_83#1      ------------------------------------------------------------
                                                                                

consensus_83#0      GCACGGATGTTCCCGCAGGGCTAAGGTTGCGGGGGGCTGGCGTGCGTATATTTTGTGGGT 1071
consensus_83#1      ------------------------------------------------------------
                                                                                

consensus_83#0      GTTATCGTGGCTTT 1085
consensus_83#1      --------------
                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)