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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_83#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1085 fasta sequence
[GATCCGAGAAGACGAGTACGGCGGCGGCGGCGTCGGGTTCGAGCCGACGGAGGACGAGCTGATGCTCCACTTCCTCCGTCCGCAGCTGCGCGGGTTCGCGCCGCGCGTGGCGGGCGCCGTGGTGGAGGCCGACCCCTGCGGCGCGGCGCCGTGGGAGCTCCTGGCGCGGCACGGGCGGCGTGAGGTACGCGTCCATACCCGCACCCCCTCTCGCCCTTCTTCTGTTCTTCTGCGTCGGCGAGTGCTCCCGCCCCCCGCAGGTATCCCATTGCGTCTCGCCCCCCCCCGCGTTGTGTGTTTCGCGGCCATCCGTCTCCCTAACTAGGTCCTTCACGGGACCGCCATCCTCGCCGGCCCCGTCTCCTCCAGGCTCGTTCGCCCCCACGCGACTACGCGCCGATCCTCCTATGGTAGCGAGTGTGTTCTCTCAGCCGTCTCTGACCTGCCTTCCAGGCGATCTGCGCGGCCCCGGGTCCTGGTTGTGCGTGCTCGCCGGCCGCGGTCGACGCGACGCTAGTATGTCGGAGTCCCGCGGAACGCAGTCGGGCTCGGCCGTCGCACTGGACGTTGGAGAGTCCATACTAGGTGGGAGCGCGAACTTTGCGGGGCGCGTCGCGCGTGGGTCCCCGCTACACTCCTCGTGCCACTCGGCGGTCCGAGCGCTTCCCCAGAGGTGTGGAGGGCTCTTTACTCCGTACGAGTGTCGTGCATGCTAGTCGTTAGTTCCGTGCGAGGGTGTGATGTTGTGCGTTCGTGTATGCGGCTTGGCCCAGTGCACGTCCCTTGCTGTCTCACAATCGCGCCCCGCGTTTGTAGCCATGGCCGGTTAGCCTTGCTAACCCGAGAGGGTTCGTCCCTCCTCCACCAGTCATGCACCTGCCATATCGTGACTTCGGCGTCTCCGTTTCCGCGGCTTCAGCGCCGGTGCGTCGTAGCGTCGGCAGTCGGACGCTCCCGGTACCCCGGACGTGAGTTTCTACACAGTCGCTGAATACTGCGTTCCTTGCCCGCGCACGGATGTTCCCGCAGGGCTAAGGTTGCGGGGGGCTGGCGTGCGTATATTTTGTGGGTGTTATCGTGGCTTT]
[+] EMBL BE039737 [GATCCGAGAAGACGAGTACGGCGGCGGCGGCGTCGGGTTCGAGCCGACGGAGGACGAGCTGATGCTCCACTTCCTCCGTCCGCAGCTGCGCGGGTTCGCGCCGCGCGTGGCGGGCGCCGTGGTGGAGGCCGACCCCTGCGGCGCGGCGCCGTGGGAGCTCCTGGCGCGGCACGGGCGGCGTGAGGTACGCGTCCATACCCGCACCCCCTCTCGCCCTTCTTCTGTTCTTCTGCGTCGGCGAGTGCTCCCGCCCCCCGCAGGTATCCCATTGCGTCTCGCCCCCCCCCGCGTTGTGTGTTTCGCGGCCATCCGTCTCCCTAACTAGGTCCTTCACGGGACCGCCATCCTCGCCGGCCCCGTCTCCTCCAGGCTCGTTCGCCCCCACGCGACTACGCGCCGATCCTCCTATGGTAGCGAGTGTGTTCTCTCAGCCGTCTCTGACCTGCCTTCCAGGCGATCTGCGCGGCCCCGGGTCCTGGTTGTGCGTGCTCGCCGGCCGCGGTCGACGCGACGCTAGTATGTCGGAGTCCCGCGGAACGCAGTCGGGCTCGGCCGTCGCACTGGACGTTGGAGAGTCCATACTAGGTGGGAGCGCGAACTTTGCGGGGCGCGTCGCGCGTGGGTCCCCGCTACACTCCTCGTGCCACTCGGCGGTCCGAGCGCTTCCCCAGAGGTGTGGAGGGCTCTTTACTCCGTACGAGTGTCGTGCATGCTAGTCGTTAGTTCCGTGCGAGGGTGTGATGTTGTGCGTTCGTGTATGCGGCTTGGCCCAGTGCACGTCCCTTGCTGTCTCACAATCGCGCCCCGCGTTTGTAGCCATGGCCGGTTAGCCTTGCTAACCCGAGAGGGTTCGTCCCTCCTCCACCAGTCATGCACCTGCCATATCGTGACTTCGGCGTCTCCGTTTCCGCGGCTTCAGCGCCGGTGCGTCGTAGCGTCGGCAGTCGGACGCTCCCGGTACCCCGGACGTGAGTTTCTACACAGTCGCTGAATACTGCGTTCCTTGCCCGCGCACGGATGTTCCCGCAGGGCTAAGGTTGCGGGGGGCTGGCGTGCGTATATTTTGTGGGTGTTATCGTGGCTTT]
consensusID : consensus_83#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 903 fasta sequence
[CACACACACCCCTACCCGTCTCTGTTCATCTCCACATCTTGTCTTCTCGCTGTTGACTTCGAGCGGAGACTAGACTAGCTACTACTCGGAATGGGGAAGGAGATGAATCTGATCCGAGAAGACGAGTACGGCGGCGGCGGCGTCGGGTTCGAGCCGACGGAGGACGAGCTGATGCTCCACTTCCTCCGTCCGCAGCTGCGCGGGTTCGCGCCGCGCGTGGCGGGCGCCGTGGTGGAGGCCGACCCCTGCGGCGCGGCGCCGTGGGAGCTCCTGGCGCGGCACGGGAGGCGGGAGGAGGGGTTCTTCTTCTCGGCGCGCGCGCGGAGGAAGCCCTCGGTGCGGCGGACCGTGGCGGGCTGCGGCGGCGGCGGTGGCGGCGGTGGCGCGTGGATGCACAGCTCCACCAAGAACGGGCAGTCCGTGACCGACCTCGGCGTGGTGGTGCGGTGGTGCAGGATCAACTACTGCTTCTACGTGCGCGGCGAGATGGGGCAGCAGCGGAGCACCGGGTGGATGATGGCCGAGTACGAGATCACCGACCCGCGGTGCTACCGCCGCGCCGACGACGGCGAGGAGGACGACTTCTGGGTTCTCTGCCATGTCAGGAAGAGCTCGAGGCCCCAAGCCGCCAAGATCTCTCCAGCCAAGCCAGCACGGCGGCGCAAGCCCGCCGCCGCCGCCGCCGCGGATGTCCGGGCTGCGTGATCCGGCCGACGGCGGAGATCACGAGGTTTGCCTCGCGTTGGGATTCGACTTCGGTTATACTTTTGCTTTGGAATTGTGTTCCTTTGCTTTATTCCTCCTCTAGCATCTGCCCATACATTCCGTGTGATGAACACTGCGAATCAAATGGGACGTTTAAGATGTTGTTGTTGTACTGATAGCGTGATTGAATTCATGGCC]
[+] EMBL AK071060 [CACACACACCCCTACCCGTCTCTGTTCATCTCCACATCTTGTCTTCTCGCTGTTGACTTCGAGCGGAGACTAGACTAGCTACTACTCGGAATGGGGAAGGAGATGAATCTGATCCGAGAAGACGAGTACGGCGGCGGCGGCGTCGGGTTCGAGCCGACGGAGGACGAGCTGATGCTCCACTTCCTCCGTCCGCAGCTGCGCGGGTTCGCGCCGCGCGTGGCGGGCGCCGTGGTGGAGGCCGACCCCTGCGGCGCGGCGCCGTGGGAGCTCCTGGCGCGGCACGGGAGGCGGGAGGAGGGGTTCTTCTTCTCGGCGCGCGCGCGGAGGAAGCCCTCGGTGCGGCGGACCGTGGCGGGCTGCGGCGGCGGCGGTGGCGGCGGTGGCGCGTGGATGCACAGCTCCACCAAGAACGGGCAGTCCGTGACCGACCTCGGCGTGGTGGTGCGGTGGTGCAGGATCAACTACTGCTTCTACGTGCGCGGCGAGATGGGGCAGCAGCGGAGCACCGGGTGGATGATGGCCGAGTACGAGATCACCGACCCGCGGTGCTACCGCCGCGCCGACGACGGCGAGGAGGACGACTTCTGGGTTCTCTGCCATGTCAGGAAGAGCTCGAGGCCCCAAGCCGCCAAGATCTCTCCAGCCAAGCCAGCACGGCGGCGCAAGCCCGCCGCCGCCGCCGCCGCGGATGTCCGGGCTGCGTGATCCGGCCGACGGCGGAGATCACGAGGTTTGCCTCGCGTTGGGATTCGACTTCGGTTATACTTTTGCTTTGGAATTGTGTTCCTTTGCTTTATTCCTCCTCTAGCATCTGCCCATACATTCCGTGTGATGAACACTGCGAATCAAATGGGACGTTTAAGATGTTGTTGTTGTACTGATAGCGTGATTGAATTCATGGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_83#0 ------------------------------------------------------------
consensus_83#1 CACACACACCCCTACCCGTCTCTGTTCATCTCCACATCTTGTCTTCTCGCTGTTGACTTC 60
consensus_83#0 --------------------------------------------------GATCCGAGAA 10
consensus_83#1 GAGCGGAGACTAGACTAGCTACTACTCGGAATGGGGAAGGAGATGAATCTGATCCGAGAA 120
**********
consensus_83#0 GACGAGTACGGCGGCGGCGGCGTCGGGTTCGAGCCGACGGAGGACGAGCTGATGCTCCAC 70
consensus_83#1 GACGAGTACGGCGGCGGCGGCGTCGGGTTCGAGCCGACGGAGGACGAGCTGATGCTCCAC 180
************************************************************
consensus_83#0 TTCCTCCGTCCGCAGCTGCGCGGGTTCGCGCCGCGCGTGGCGGGCGCCGTGGTGGAGGCC 130
consensus_83#1 TTCCTCCGTCCGCAGCTGCGCGGGTTCGCGCCGCGCGTGGCGGGCGCCGTGGTGGAGGCC 240
************************************************************
consensus_83#0 GACCCCTGCGGCGCGGCGCCGTGGGAGCTCCTGGCGCGGCACGGGCGGCGTGAGGTACGC 190
consensus_83#1 GACCCCTGCGGCGCGGCGCCGTGGGAGCTCCTGGCGCGGCACGGGAGGCGGGAGGAGGGG 300
********************************************* **** **** *
consensus_83#0 GTCCATACCCGCACCCCCTCTCG-------CCCTTCTTCTGTTCTTCTGCGTCGGCGAGT 243
consensus_83#1 TTCTTCTTCTCGGCGCGCGCGCGGAGGAAGCCCTCGGTGCGGCGGACCGTGGCGGGCTGC 360
** * * * * * ** **** * * * * * *** *
consensus_83#0 GCTCCCGCCCCCCGCAG--GTATCCCATTGCGTCTCGCCCCCCCCCGCGTTGTGTGTTTC 301
consensus_83#1 GGCGGCGGCGGTGGCGGCGGTGGCGCGTGGATGCACAGCTCCACCAAGAACGGGCAGTCC 420
* ** * ** * ** * * * * * * * ** ** * * * *
consensus_83#0 GCGGCCATCC--GTCTCCCTAACTAGGTCCTTCACGG--GACCGCCATCCTCGCCGGCCC 357
consensus_83#1 GTGACCGACCTCGGCGTGGTGGTGCGGTGGTGCAGGATCAACTACTGCTTCTACGTGCGC 480
* * ** ** * * * *** * ** * ** * * ** *
consensus_83#0 CGTCTCCTCCAGGCTCGTTCGCCC-CCACGCGACTACGCGCCGATCCTCCTATGGTAGCG 416
consensus_83#1 GGCGAGATGGGGCAGCAGCGGAGCACCGGGTGGATGATGGCCGAG--TACGAGATCACCG 538
* * * * * * ** * * * ***** * * * * **
consensus_83#0 AGT-GTGTTCTCTCAGCCGTCTCTGACCTGCCTTCCAGGCGATCTGCGCGGCCCCGGGTC 475
consensus_83#1 ACCCGCGGTGCTACCGCCGCGCCGACGACGGCGAGGAGGACGACTTCTGGGTTCTCTGCC 598
* * * * * **** * * * *** ** * ** * * *
consensus_83#0 CTGGTTGTGCGTGCTCGCCGGCCGCGGTCGACGCGACGCTAGTATGTCGG--AGTCCCGC 533
consensus_83#1 ATGTCAGGAAGAGCTCGAGGCCCCAAGCCGCCAAGATCTCTCCAGCCAAGCCAGCACGGC 658
** * * ***** * ** * ** * ** * * ** * **
consensus_83#0 GGAACGCAGTCGGGCTCGGCCGTCGCACTGGACGTTGGAGAGTCCATACTAGGTGGGAGC 593
consensus_83#1 GGCGCA-AGCCCGCCGCCGCCGCCGCCGCGGATGTCCG-GGCTGCGTGATCCGGCCGACG 716
** * ** * * * * **** *** *** ** * * * * * * * **
consensus_83#0 GCGAACTTTGCGGGGCGCGTCGCGCGT-GGGTCCCCGCTACACTCCTCGTGCCACTCGGC 652
consensus_83#1 GCGGAGATCACGAGGTTTGCCTCGCGTTGGGATTCGACTTCGGTTATACTTTTGCTTTGG 776
*** * * ** ** * * ***** *** * ** * * * * ** *
consensus_83#0 GGTCCGAGCGCTTCCCCAGAGGTGTGGAGGGCTCTTTACTCCGTACGAGTGTCGTGCATG 712
consensus_83#1 AATTGTGTTCCTTTGCTTTATTCCTCCTCTAGCATCTGC-CCATACATTCCGTGTG-ATG 834
* *** * * * * * * ** *** *** ***
consensus_83#0 CTAGTCGTTAGTTCCGTGCGAGGGT-GTGATGTTGTGCGTTCGTGTATGCGGCTTGGCCC 771
consensus_83#1 AACACTGCGAATCAAATGGGACGTTTAAGATGTTGT-TGTT-GTACTGATAGCGTGATTG 892
* * * ** ** * * ******** *** ** ** **
consensus_83#0 AGTGCACGTCCCTTGCTGTCTCACAATCGCGCCCCGCGTTTGTAGCCATGGCCGGTTAGC 831
consensus_83#1 AATTCATGGCC------------------------------------------------- 903
* * ** * **
consensus_83#0 CTTGCTAACCCGAGAGGGTTCGTCCCTCCTCCACCAGTCATGCACCTGCCATATCGTGAC 891
consensus_83#1 ------------------------------------------------------------
consensus_83#0 TTCGGCGTCTCCGTTTCCGCGGCTTCAGCGCCGGTGCGTCGTAGCGTCGGCAGTCGGACG 951
consensus_83#1 ------------------------------------------------------------
consensus_83#0 CTCCCGGTACCCCGGACGTGAGTTTCTACACAGTCGCTGAATACTGCGTTCCTTGCCCGC 1011
consensus_83#1 ------------------------------------------------------------
consensus_83#0 GCACGGATGTTCCCGCAGGGCTAAGGTTGCGGGGGGCTGGCGTGCGTATATTTTGTGGGT 1071
consensus_83#1 ------------------------------------------------------------
consensus_83#0 GTTATCGTGGCTTT 1085
consensus_83#1 --------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||