These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8303#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2268 fasta sequence [GTACCGGATTATCCTAATCGCGTTTACTAAACTCCGCTAAAATCTCTTGTATTCCCACAAAATTTCCCCAAAATTTTTTACTAAAACTTTTTTCTCAAGATAGAAAAAACTATATATCCTTTTGGTTTGCAAAGGTTTTACTAGGTTATTTGCCCCCCTCTTCTAGAACGCATCCAGAATTCGTGGACTCTGCGACCCAACTCACACGGCGAAGCACACAGAATTTTTTTTCCCAAATCCATTTATTTTCCTCTCTTCTCTCTCTCGAATCGAATCGAATCGCCTCGCCTCCTTTGTTGAATTGAATCCAAGCTCGATTCGCCGCCGCCGCACGCCGCCATGGGCAACTGCTGCGGCACGCCGGCGACGGCGGAGGAGGGCGGGAAGAGGAGGAGGAGGGGGAAGCAGAAGAAGGCGAACCCCTTCACCGTCGCGTACAACCGCGCGCCGTCGTCGGCGGGGGCGGCGGCGGGGAGGCCCGGGCTGATGGTGCTGCGGGACCCGACGGGGCGGGACCTCGGCGCGCGGTACGAGCTCGGCGGCGAGCTGGGGCGCGGCGAGTTCGGGATCACGTACCTGTGCACGGAGGCGGAGACGGGGGACAGGTACGCGTGCAAGTCGATATCGAAGCGGAAGCTGCGGACGCCGGTGGACGTGGAGGACGTGCGGCGCGAGGTGGAGATCATGCGCCACATGCCGTCGCATCCGAACATCGTCAGCCTCCGCGCCGCCTACGAGGACGAGGACAACGTGCACCTCGTCATGGAGCTCTGCGAGGGCGGCGAGCTCTTCGACAGGATCGTCGCGCGGGGCCACTACACCGAGCGCGCCGCCGCCGCCGTCACGCGCACCATCGTCGAGGTGGTTCAGATGTGCCACAGGCATGGTGTCATGCACCGCGACCTTAAACCAGAAAACTTCCTATATGCTAACAAGAAGGATAGTTCTCCTCTGAAGGCAATTGATTTTGGGCTATCTGTGTTCTTCAGGCCTGGTGAGCGGTTCACTGAAATTGTAGGCAGTCCATATTACATGGCTCCAGAGGTTTTAAAGCGACACTATGGCCCTGAAGTTGATGTCTGGAGTGCAGGAGTGATACTTTACATACTTCTTTGCGGTGTACCACCATTTTGGGCAGAAACCGAGCAGGGAGTAGCGCAGGCAATTATACGCTCTGTGGTAGATTTCAAAAGAGAACCATGGCCCAGGGTATCTGAGCCAGCTAAAGATCTTGTTAAGCGGATGTTGGACCCAAATCCCATGACAAGGCTTACTGCAGAACAAGTACTTGAACATCCATGGTTACATGATTCTAAAAAGATGCCTGACATTCCTCTTGGTGATGCTGTCCGAGCTAGACTGCAGCAATTTGCTGCGATGAACAAGTTAAAGAAGAAAGCCCTTAAGGTCATTGCTGAGCATTTGTCTGCAGAGGAAGCAGCTGACATAAAGGACATGTTTGATAAAATGGATGTGAGCAAGAATGGCCAGCTGACCTTTGAGGATTTCAAGGCTGGCATACGTAAACTTGGGAATCAGATGCCTGATTCAGATCTTAAGATATTGATGGATGCTGCTGATATTGACAAAAATGGGATCCTGGACTATCAAGAATTTGTTGCTGTGTCTATCCATGTGAGGAAAATAGGCAATGATGAACATATCCAGAAGGCTTTCTCATATTTTGACCAAAATAAGAGTGGTTACATAGAAATTGAAGAGCTTAGAGAGGCCTTGGTTGATGAAATAGATGGCAATGATGAAGACATTATTAATAGCATCATCCGTGATGTAGATACAGACAAGGATGGGAAAATAAGCTACGACGAGTTTGCCGTCATGATGAAGGCCGGCACTGACTGGAGGAAGGCATCTAGGCAGTACTCAAGACAAAGGTTCAGTAACCTCAGTCTGAAGCTTCAAAAGGACGGATCCATCAGTGACGACACGCAATAGACTGGACAGAGAAAAAAACTACGCTTACGTTTTTTCTTTGCTGTGTGCTGGCTGTTACATTATTTTTTCACACAGTAACTTAGTGGCTTTGTATAGATAGCATTTGTGGTTTTGTGCTTACCAGCAGCGATTATATTTGTCAGTCAGGCGGCAGATATGTATGTACCCAAAAGAGGGCGGGATGGGGAAGCAGATGGTGTGCTTACAGTTTACTAGACCAGAATTATTGGTACAATTGTTTGTAGTTTTGTACGTACCATAATACAAGCGGCGTGAAATTCTCAACTCGTTCATCCTGTTGTCATCCAAAAA] [+] EMBL AK066615 [GTACCGGATTATCCTAATCGCGTTTACTAAACTCCGCTAAAATCTCTTGTATTCCCACAAAATTTCCCCAAAATTTTTTACTAAAACTTTTTTCTCAAGATAGAAAAAACTATATATCCTTTTGGTTTGCAAAGGTTTTACTAGGTTATTTGCCCCCCTCTTCTAGAACGCATCCAGAATTCGTGGACTCTGCGACCCAACTCACACGGCGAAGCACACAGAATTTTTTTTCCCAAATCCATTTATTTTCCTCTCTTCTCTCTCTCGAATCGAATCGAATCGCCTCGCCTCCTTTGTTGAATTGAATCCAAGCTCGATTCGCCGCCGCCGCACGCCGCCATGGGCAACTGCTGCGGCACGCCGGCGACGGCGGAGGAGGGCGGGAAGAGGAGGAGGAGGGGGAAGCAGAAGAAGGCGAACCCCTTCACCGTCGCGTACAACCGCGCGCCGTCGTCGGCGGGGGCGGCGGCGGGGAGGCCCGGGCTGATGGTGCTGCGGGACCCGACGGGGCGGGACCTCGGCGCGCGGTACGAGCTCGGCGGCGAGCTGGGGCGCGGCGAGTTCGGGATCACGTACCTGTGCACGGAGGCGGAGACGGGGGACAGGTACGCGTGCAAGTCGATATCGAAGCGGAAGCTGCGGACGCCGGTGGACGTGGAGGACGTGCGGCGCGAGGTGGAGATCATGCGCCACATGCCGTCGCATCCGAACATCGTCAGCCTCCGCGCCGCCTACGAGGACGAGGACAACGTGCACCTCGTCATGGAGCTCTGCGAGGGCGGCGAGCTCTTCGACAGGATCGTCGCGCGGGGCCACTACACCGAGCGCGCCGCCGCCGCCGTCACGCGCACCATCGTCGAGGTGGTTCAGATGTGCCACAGGCATGGTGTCATGCACCGCGACCTTAAACCAGAAAACTTCCTATATGCTAACAAGAAGGATAGTTCTCCTCTGAAGGCAATTGATTTTGGGCTATCTGTGTTCTTCAGGCCTGGTGAGCGGTTCACTGAAATTGTAGGCAGTCCATATTACATGGCTCCAGAGGTTTTAAAGCGACACTATGGCCCTGAAGTTGATGTCTGGAGTGCAGGAGTGATACTTTACATACTTCTTTGCGGTGTACCACCATTTTGGGCAGAAACCGAGCAGGGAGTAGCGCAGGCAATTATACGCTCTGTGGTAGATTTCAAAAGAGAACCATGGCCCAGGGTATCTGAGCCAGCTAAAGATCTTGTTAAGCGGATGTTGGACCCAAATCCCATGACAAGGCTTACTGCAGAACAAGTACTTGAACATCCATGGTTACATGATTCTAAAAAGATGCCTGACATTCCTCTTGGTGATGCTGTCCGAGCTAGACTGCAGCAATTTGCTGCGATGAACAAGTTAAAGAAGAAAGCCCTTAAGGTCATTGCTGAGCATTTGTCTGCAGAGGAAGCAGCTGACATAAAGGACATGTTTGATAAAATGGATGTGAGCAAGAATGGCCAGCTGACCTTTGAGGATTTCAAGGCTGGCATACGTAAACTTGGGAATCAGATGCCTGATTCAGATCTTAAGATATTGATGGATGCTGCTGATATTGACAAAAATGGGATCCTGGACTATCAAGAATTTGTTGCTGTGTCTATCCATGTGAGGAAAATAGGCAATGATGAACATATCCAGAAGGCTTTCTCATATTTTGACCAAAATAAGAGTGGTTACATAGAAATTGAAGAGCTTAGAGAGGCCTTGGTTGATGAAATAGATGGCAATGATGAAGACATTATTAATAGCATCATCCGTGATGTAGATACAGACAAGGATGGGAAAATAAGCTACGACGAGTTTGCCGTCATGATGAAGGCCGGCACTGACTGGAGGAAGGCATCTAGGCAGTACTCAAGACAAAGGTTCAGTAACCTCAGTCTGAAGCTTCAAAAGGACGGATCCATCAGTGACGACACGCAATAGACTGGACAGAGAAAAAAACTACGCTTACGTTTTTTCTTTGCTGTGTGCTGGCTGTTACATTATTTTTTCACACAGTAACTTAGTGGCTTTGTATAGATAGCATTTGTGGTTTTGTGCTTACCAGCAGCGATTATATTTGTCAGTCAGGCGGCAGATATGTATGTACCCAAAAGAGGGCGGGATGGGGAAGCAGATGGTGTGCTTACAGTTTACTAGACCAGAATTATTGGTACAATTGTTTGTAGTTTTGTACGTACCATAATACAAGCGGCGTGAA ] [+] EMBL CB630153 [ TTTCCATATCCATTTATTTTCCTCTCTTCTCTCTCTCGAATCGAATCGAATCGCCTCGCCTCCTTTGTTGAATTGAATCCAAGCTCGATTCGCCGCCGCCGCACGCCGCCATGGGCAACTGCTGCGGCACGCCGGCGACGGCGGAGGAGGGCGGGAAGAGGAGGAGGAGGGGGAAGCAGAAGAAGGCGAACCCCTTCACCGTCGCGTACAACCGCGCGCCGTCGTCGGCGGGGGCGGCGGCGGGGAGGCCCGGGCTGATGGTGCTGCGGGACCCGACGGGGCGGGACCTCGGCGCGCGGTACGAGCTCGGCGGCGAGCTGGGGCGCGGCGAGTTCGGGATCACGTACCTGTGCACGGAGGCGGAGACGGGGGACAGGTACGCGTGCAAGTCGATATCGAAGCGGAAGCTGCGGACGCCGGTGGACGTGGAGGACGTGCGGCGCGAGGTGGAGATCATGCGCCACATGCCGTCGCATCCGAACATCGTCAGCCTCCGCGCCGCCTACGAGGACGAGGACAACGTGCACCTCGTCATGGAGCTCTGCGAGGGCGGCGAGCTCTTCGACAGGATCGTCGCGCGGGGCCACTACACCGAGCGTGCCGCCGCCGCCGTCACGCGCACCATCGTCGAGGTGGTTCAGATGTGCCACAGGCATGGTGTCATGCACCGCGACCTTAAACCAGAAAACTTCCTATATGCTAACAAGAAGGATAGTTCTCCTCTGAAGGCAATTGATTTTGGGCTATCTGTGTTCTTCAGGCCTGGTGAG ] [+] EMBL C22659 [ cgagGGGATCACGTACCTGTGCACGGAGGCGGAGACNGGGGACAGGTACGCGTGCAAGTCGATATCGAAGCGGAAGCNGCGGACNCCGGTGGACGTGGAGGACGTNCGGCGCGAGGTGGAGATCATNCGCCACATNCCGTCGCATCCGAACATCGTCAGCCTCCGCGCCGCCTACAANGACGAGGACAACGTGCACCTCGTC ] [+] EMBL BQ907356 [ TACAGACNAGGATGGGAAAATAAGCTACGACGAGTTTGCCGTCATGATGAAGGCCGGCACTGACTGGAGGAAGGCATCTAGGCAGTACTCAAGACCAAGGTTCAGTAACCTCAGTCTGAAGCTTCNAAAGGACGGATCCATCAGTGACGACACGCAATAGACTGGACAGAGAAAAAAACTACGCTTACGTTTTTTCTTTGCTGTGTGCTGGCTGTTACATTATTTTTTCACACAGTAACTTAGTGGCTTTGTATAGATAGCATTTGTGGTTTTGTGCTTACCAGCAGCGATTATATTTGTCAGTCAGGCGGCAGATATGTATGTACCCCAAAGAGGGCGGGATGGGGAAGCAGATGGTGTGCTTACAGTTTACTAGACCAGAATTATTGGTAC ATTGTTTGTAGTTTTGTACGTACCATAATACAAGCGGCGTGAAATTCTCAACTCGTTCATCCTGTTGTCATCCAAAAA] consensusID : consensus_8303#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence [AAAGGTTCNGTAACCTCAGTCTGAAGCTTCAAAAGGACGGATCCATCCGTGACGACACGCNATAGNCTGGACAGAGAAAAAAACTACGCTTACGTTTTTNCTTTGCTGTGTGNTGGCTGTTACATTATTTTTTCACACAGTAACTTAGTGGCTTTGTATAGATAGCATTTGTGGTTTTGTGCTTACCNGCNGCGATTATATTTGTCAGTCAGGCGGCNGATATGTATGTACCCAAAAGAGGGCGGGATGGGGAAGCAGATGGTGTGCTTACNGTTTACTAGACCAGAATTATTGGTACAATTGTTTGTNGTTTTGTACGTACCATAATACAAGCGGNGTGAAATTCTCAACTCGTTAAAAAAAAAA] [+] EMBL C22658 [AAAGGTTCNGTAACCTCAGTCTGAAGCTTCAAAAGGACGGATCCATCCGTGACGACACGCNATAGNCTGGACAGAGAAAAAAACTACGCTTACGTTTTTNCTTTGCTGTGTGNTGGCTGTTACATTATTTTTTCACACAGTAACTTAGTGGCTTTGTATAGATAGCATTTGTGGTTTTGTGCTTACCNGCNGCGATTATATTTGTCAGTCAGGCGGCNGATATGTATGTACCCAAAAGAGGGCGGGATGGGGAAGCAGATGGTGTGCTTACNGTTTACTAGACCAGAATTATTGGTACAATTGTTTGTNGTTTTGTACGTACCATAATACAAGCGGNGTGAAATTCTCAACTCGTTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8303#0 GTACCGGATTATCCTAATCGCGTTTACTAAACTCCGCTAAAATCTCTTGTATTCCCACAA 60 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 AATTTCCCCAAAATTTTTTACTAAAACTTTTTTCTCAAGATAGAAAAAACTATATATCCT 120 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 TTTGGTTTGCAAAGGTTTTACTAGGTTATTTGCCCCCCTCTTCTAGAACGCATCCAGAAT 180 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 TCGTGGACTCTGCGACCCAACTCACACGGCGAAGCACACAGAATTTTTTTTCCCAAATCC 240 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 ATTTATTTTCCTCTCTTCTCTCTCTCGAATCGAATCGAATCGCCTCGCCTCCTTTGTTGA 300 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 ATTGAATCCAAGCTCGATTCGCCGCCGCCGCACGCCGCCATGGGCAACTGCTGCGGCACG 360 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 CCGGCGACGGCGGAGGAGGGCGGGAAGAGGAGGAGGAGGGGGAAGCAGAAGAAGGCGAAC 420 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 CCCTTCACCGTCGCGTACAACCGCGCGCCGTCGTCGGCGGGGGCGGCGGCGGGGAGGCCC 480 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 GGGCTGATGGTGCTGCGGGACCCGACGGGGCGGGACCTCGGCGCGCGGTACGAGCTCGGC 540 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 GGCGAGCTGGGGCGCGGCGAGTTCGGGATCACGTACCTGTGCACGGAGGCGGAGACGGGG 600 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 GACAGGTACGCGTGCAAGTCGATATCGAAGCGGAAGCTGCGGACGCCGGTGGACGTGGAG 660 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 GACGTGCGGCGCGAGGTGGAGATCATGCGCCACATGCCGTCGCATCCGAACATCGTCAGC 720 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 CTCCGCGCCGCCTACGAGGACGAGGACAACGTGCACCTCGTCATGGAGCTCTGCGAGGGC 780 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 GGCGAGCTCTTCGACAGGATCGTCGCGCGGGGCCACTACACCGAGCGCGCCGCCGCCGCC 840 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 GTCACGCGCACCATCGTCGAGGTGGTTCAGATGTGCCACAGGCATGGTGTCATGCACCGC 900 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 GACCTTAAACCAGAAAACTTCCTATATGCTAACAAGAAGGATAGTTCTCCTCTGAAGGCA 960 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 ATTGATTTTGGGCTATCTGTGTTCTTCAGGCCTGGTGAGCGGTTCACTGAAATTGTAGGC 1020 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 AGTCCATATTACATGGCTCCAGAGGTTTTAAAGCGACACTATGGCCCTGAAGTTGATGTC 1080 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 TGGAGTGCAGGAGTGATACTTTACATACTTCTTTGCGGTGTACCACCATTTTGGGCAGAA 1140 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 ACCGAGCAGGGAGTAGCGCAGGCAATTATACGCTCTGTGGTAGATTTCAAAAGAGAACCA 1200 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 TGGCCCAGGGTATCTGAGCCAGCTAAAGATCTTGTTAAGCGGATGTTGGACCCAAATCCC 1260 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 ATGACAAGGCTTACTGCAGAACAAGTACTTGAACATCCATGGTTACATGATTCTAAAAAG 1320 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 ATGCCTGACATTCCTCTTGGTGATGCTGTCCGAGCTAGACTGCAGCAATTTGCTGCGATG 1380 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 AACAAGTTAAAGAAGAAAGCCCTTAAGGTCATTGCTGAGCATTTGTCTGCAGAGGAAGCA 1440 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 GCTGACATAAAGGACATGTTTGATAAAATGGATGTGAGCAAGAATGGCCAGCTGACCTTT 1500 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 GAGGATTTCAAGGCTGGCATACGTAAACTTGGGAATCAGATGCCTGATTCAGATCTTAAG 1560 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 ATATTGATGGATGCTGCTGATATTGACAAAAATGGGATCCTGGACTATCAAGAATTTGTT 1620 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 GCTGTGTCTATCCATGTGAGGAAAATAGGCAATGATGAACATATCCAGAAGGCTTTCTCA 1680 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 TATTTTGACCAAAATAAGAGTGGTTACATAGAAATTGAAGAGCTTAGAGAGGCCTTGGTT 1740 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 GATGAAATAGATGGCAATGATGAAGACATTATTAATAGCATCATCCGTGATGTAGATACA 1800 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 GACAAGGATGGGAAAATAAGCTACGACGAGTTTGCCGTCATGATGAAGGCCGGCACTGAC 1860 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 TGGAGGAAGGCATCTAGGCAGTACTCAAGACAAAGGTTCAGTAACCTCAGTCTGAAGCTT 1920 consensus_8303#1 -------------------------------AAAGGTTCNGTAACCTCAGTCTGAAGCTT 29 ******** ******************** consensus_8303#0 CAAAAGGACGGATCCATCAGTGACGACACGCAATAGACTGGACAGAGAAAAAAACTACGC 1980 consensus_8303#1 CAAAAGGACGGATCCATCCGTGACGACACGCNATAGNCTGGACAGAGAAAAAAACTACGC 89 ****************** ************ **** *********************** consensus_8303#0 TTACGTTTTTTCTTTGCTGTGTGCTGGCTGTTACATTATTTTTTCACACAGTAACTTAGT 2040 consensus_8303#1 TTACGTTTTTNCTTTGCTGTGTGNTGGCTGTTACATTATTTTTTCACACAGTAACTTAGT 149 ********** ************ ************************************ consensus_8303#0 GGCTTTGTATAGATAGCATTTGTGGTTTTGTGCTTACCAGCAGCGATTATATTTGTCAGT 2100 consensus_8303#1 GGCTTTGTATAGATAGCATTTGTGGTTTTGTGCTTACCNGCNGCGATTATATTTGTCAGT 209 ************************************** ** ****************** consensus_8303#0 CAGGCGGCAGATATGTATGTACCCAAAAGAGGGCGGGATGGGGAAGCAGATGGTGTGCTT 2160 consensus_8303#1 CAGGCGGCNGATATGTATGTACCCAAAAGAGGGCGGGATGGGGAAGCAGATGGTGTGCTT 269 ******** *************************************************** consensus_8303#0 ACAGTTTACTAGACCAGAATTATTGGTACAATTGTTTGTAGTTTTGTACGTACCATAATA 2220 consensus_8303#1 ACNGTTTACTAGACCAGAATTATTGGTACAATTGTTTGTNGTTTTGTACGTACCATAATA 329 ** ************************************ ******************** consensus_8303#0 CAAGCGGCGTGAAATTCTCAACTCGTTCATCCTGTTGTCATCCAAAAA 2268 consensus_8303#1 CAAGCGGNGTGAAATTCTCAACTCGTTAAAAAAAAAA----------- 366 ******* ******************* * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||