These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8310#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1299 fasta sequence [ATCAATTCAAGGAAGTGGTGTCATAAATGGTAGGGGGCAAGAATGGTGGACCTATTCAGATCCAAATGACGACGACAATGATGATGTTGATGCTTACAATGTGGAGCTGGAGAAGATGCCACAGATTAAACCTACAGCATTGAGGTTTTATGGTAGTTCCAATGTCACAGTAACTGGTATCACCATTGTTAACAGCTCACAGTGCCATCTCAAGTTTGATAGCTGTCAAGGAGTAATGGTTCATGACCTGACCATCTCATCGCCTGAGAACAGTCCCAACACTGATGGAATACACCTGCAAAATTCCAAACAAGTCAGCATTCACCACTCTAACCTCGCTTGCGGCGATGATTGTGTTTCCATCCAGACAGGCTGCAGTGACATAAACATACATAATGTGAACTGTGGACCAGGGCATGGGATCAGCATTGGTGGTCTAGGAAGGTACAACACAAAAGCATGTGTATCCAATGTCACCGTAAGAGATGTCAACATGTTCAAAACAATGACTGGTGTCAGAATCAAAACTTGGCAGGGAGGTTCAGGGTTGGTTCAAGGCATAAGGTTCTCAAACATACAAGTGTCAGAAGTTCAAACACCTATCATAATAGACCAATTTTACTGTGACAGAACAACTTGCAGAAACCAAACATCAGCAGTGGCGGTTTTA-GGTGTTCAGTACGAGAATATCAGGGGGACCTTCACAATCAAGCCTGCCCATTTTGCATGCAGTGATAGCTCGCCTTGTTCAGAGATCACTCTTACTGGAATACAGCTCAAACCCCTGATAGTGCCACAGTATCACCTGTACAACCCATTCTGCTGGCAAGCCTTTGGAGAGTTGTCCACCCCCACCATCCCTCCCATATCCTGCTTGCAGATCGGCAAA-CCATCTGGGAACAACGTGATGTCAGATTATGATCTATGTTGAAACTCTCTGAATGAGTGGAAATGCTGTGATCCAGGAAATACTATACTCCTGGTCCTCATTGGTTAGGGTGGTCGTCGTGATTCTTCCGACCCCCTTTCTGCACAATCATCGTGTGGTGT-ATATATATACAGTTTATGCAAGGATAGTATATGGTTATCAGGACATGTACCAGCTTCCCTCTTGAAGTGAAATGTAGGAATTTGATAATGTAAGGGATAGTGTTCATGCATTGTTCTAGATGCATCATGCATACATACGAGGTAGTACTAGTCACTCTGCTATCAATTTCGGTAATGAAATGGGACCATTCCTCTCTTTCTCAAAAAAAAAGTACTATTAAGATGGATGAAACAGAAAAAAAAAAAAAA] [+] EMBL AK108477 [ATCAATTCAAGGAAGTGGTGTCATAAATGGTAGGGGGCAAGAATGGTGGACCTATTCAGATCCAAATGACGACGACAATGATGATGTTGATGCTTACAATGTGGAGCTGGAGAAGATGCCACAGATTAAACCTACAGCATTGAGGTTTTATGGTAGTTCCAATGTCACAGTAACTGGTATCACCATTGTTAACAGCTCACAGTGCCATCTCAAGTTTGATAGCTGTCAAGGAGTAATGGTTCATGACCTGACCATCTCATCGCCTGAGAACAGTCCCAACACTGATGGAATACACCTGCAAAATTCCAAACAAGTCAGCATTCACCACTCTAACCTCGCTTGCGGCGATGATTGTGTTTCCATCCAGACAGGCTGCAGTGACATAAACATACATAATGTGAACTGTGGACCAGGGCATGGGATCAGCATTGGTGGTCTAGGAAGGTACAACACAAAAGCATGTGTATCCAATGTCACCGTAAGAGATGTCAACATGTTCAAAACAATGACTGGTGTCAGAATCAAAACTTGGCAGGGAGGTTCAGGGTTGGTTCAAGGCATAAGGTTCTCAAACATACAAGTGTCAGAAGTTCAAACACCTATCATAATAGACCAATTTTACTGTGACAGAACAACTTGCAGAAACCAAACATCAGCAGTGGCGGTTTTA GGTGTTCAGTACGAGAATATCAGGGGGACCTTCACAATCAAGCCTGCCCATTTTGCATGCAGTGATAGCTCGCCTTGTTCAGAGATCACTCTTACTGGAATACAGCTCAAACCCCTGATAGTGCCACAGTATCACCTGTACAACCCATTCTGCTGGCAAGCCTTTGGAGAGTTGTCCACCCCCACCATCCCTCCCATATCCTGCTTGCAGATCGGCAAA CCATCTGGGAACAACGTGATGTCAGATTATGATCTATGTTGAAACTCTCTGAATGAGTGGAAATGCTGTGATCCAGGAAATACTATACTCCTGGTCCTCATTGGTTAGGGTGGTCGTCGTGATTCTTCCGACCCCCTTTCTGCACAATCATCGTGTGGTGT ATATATATACAGTTTATGCAAGGATAGTATATGGTTATCAGGACATGTACCAGCTTCCCTCTTGAAGTGAAATGTA ] [+] EMBL OSS14229A [ ACCTCGCTTG GGCGATGATTGTGTTTCCATCCAGACAGGCTGCAGTGACATAAACATACATAATGTGAACTGTGGACCAGGGCATGGGATCAGCATTGGTGGTCTAGGAAGGTACAACACAAAAGCATGTGTATCCAATGTCACCGTAAGAGATGTCAACATGTTCAAAACAATGACTGGTGTCAGAATCAAAACTTGGCAGGGAGGTTCAGGGTTGGTTCAAGGCATAAGGTTCTCAAACATACAAGTGTCAGAAGTTCAAACACCTATCATAATAGACCAATTTTACTGTGACAGAACAACTTGCAGAAACCAAACATCAGCAGTGGCGGTTTTAGGGTGTTCAGTACGAGAATATCAGGGGG NCTTCACAATCAAG CTGCCCATTTTGCATGCAGTGATAGCTCGCCTTGTTCAGAGATCA TTTTACTNGGATACAG ] [+] EMBL AU096556 [ CATCCCTCCCATATCCTGCTTGCAGATCGGCAAANCCATCTGGGAACAACGTGATGTCAGATTATGATCTATGTTGAAACTCTCTGAATGAGTGGAAATGCTGTGATCCAGGAAATACTATACTCCTGGTCCTCATTGGTTAGGGTGGTCGTCGTGATTCTTCCGACCCCCTTTCTGCACAATCATCGTGTGGTGTNATATATATACAGTTTATGCAAGGATAGTATATGGTTATCAGGACATGTACCAGCTTCCCTCTTGAAGTGAAATGTAGGAATTTGATAATGTAAGGGATAGTGTTCATGCATTGTTCTAGATGCATCATGCATACATACGAGGTAGTACTAGTCACTCTGCTATCAATTTCGGTAATGAAATGGGACCATTCCTCTCTTTCTCAAAAAAAAAGTACTATTAAGATGGATGAAACAGAAAAAAAAAAAAAA] consensusID : consensus_8310#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 686 fasta sequence [TCCCCTCCTGTTGATTGCTCTCAACCGCATCAAATCTGCAACCAATCGGTCTAGCTAATAAGCGTGCGTGCGAGTGGTGTCCGACAGACACGCCTAATGCGGTCGACCTCTAGAGTCCACCTCACCTCGATTCTCCGGCCTCTCTAGCCTTCCCTCACGCGCCCGAACCCGCAGCCTTCTATGGGTCCTTCCACTCTCGAAAATTGTAGCCATTCTTTGCCCAACTCGTAGCTCATCCAACATAGCCGTGCGGGTGCCTGCACCGATCGCTCGCCTTCTCGAGGTGGCACTCGTGATGTCACGCAGCTCATGCCCCTGATAGTTCCCCAGTATCACCTGTACAACCCATTTTGCTGGCAAGCCTTTGGAGAGTTGTNCACCCCCACCATCCCTCCCATATCCTGCTTGCAGATCGGCAAACCATCTGGGAACAACGTGATGTCAGATTATGATCTATGTTGAAACTCTCTGAATGAGTGGAAATGCTGTGATCCAGGAAATACTATACTCCTGGTCCTCATTGGTTAGGGTGGTCGTCGTGATTCTTCCGACCCCCTTTTTGCACAATCATCGTGTGGTGTATATATATACAGTTTATGCAAGGATAGTATATGGTTATCAGGACATGTACCAGCTTCCCTCTTGAAGTGAAATGTAGAAATTTGATAATGTAAAAAAAAAAAAAA] [-] EMBL CA763035 [TCCCCTCCTGTTGATTGCTCTCAACCGCATCAAATCTGCAACCAATCGGTCTAGCTAATAAGCGTGCGTGCGAGTGGTGTCCGACAGACACGCCTAATGCGGTCGACCTCTAGAGTCCACCTCACCTCGATTCTCCGGCCTCTCTAGCCTTCCCTCACGCGCCCGAACCCGCAGCCTTCTATGGGTCCTTCCACTCTCGAAAATTGTAGCCATTCTTTGCCCAACTCGTAGCTCATCCAACATAGCCGTGCGGGTGCCTGCACCGATCGCTCGCCTTCTCGAGGTGGCACTCGTGATGTCACGCAGCTCATGCCCCTGATAGTTCCCCAGTATCACCTGTACAACCCATTTTGCTGGCAAGCCTTTGGAGAGTTGTNCACCCCCACCATCCCTCCCATATCCTGCTTGCAGATCGGCAAACCATCTGGGAACAACGTGATGTCAGATTATGATCTATGTTGAAACTCTCTGAATGAGTGGAAATGCTGTGATCCAGGAAATACTATACTCCTGGTCCTCATTGGTTAGGGTGGTCGTCGTGATTCTTCCGACCCCCTTTTTGCACAATCATCGTGTGGTGTATATATATACAGTTTATGCAAGGATAGTATATGGTTATCAGGACATGTACCAGCTTCCCTCTTGAAGTGAAATGTAGAAATTTGATAATGTAAAAAAAAAAAAAA] [-] EMBL CF308329 [ TCGGCAAACCATCTGGGAACAACGTGATGTCAGATTATGATCTATGTCGAAACTCTCTGAATGAGTGGAAATGCTGTGATCCAGGAAATACTATACTCCTGGTCCTCATTGGTTAGGGTGGTCGTCGTGATTCTTCCGACCCCCTTTCTGCACAATCATCGTGTGGTGTATATATATACAGTTTATGCAAGGATAGTATATGGTTATCAGGACATGTACCAGCTTCCCTCTTGAAGTGAAATGTAGGAATTTGATAATGTAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8310#0 ATCAATTCAAGGAAGTGGTGTCATAAATGGTAGGGGGCAAGAATGGTGGACCTATTCAGA 60 consensus_8310#1 ------------------------------------------------------------ consensus_8310#0 TCCAAATGACGACGACAATGATGATGTTGATGCTTACAATGTGGAGCTGGAGAAGATGCC 120 consensus_8310#1 ------------------------------------------------------------ consensus_8310#0 ACAGATTAAACCTACAGCATTGAGGTTTTATGGTAGTTCCAATGTCACAGTAACTGGTAT 180 consensus_8310#1 ------------------------------------------------------------ consensus_8310#0 CACCATTGTTAACAGCTCACAGTGCCATCTCAAGTTTGATAGCTGTCAAGGAGTAATGGT 240 consensus_8310#1 ------------------------------------------------------------ consensus_8310#0 TCATGACCTGACCATCTCATCGCCTGAGAACAGTCCCAACACTGATGGAATACACCTGCA 300 consensus_8310#1 ------------------------------------------------------------ consensus_8310#0 AAATTCCAAACAAGTCAGCATTCACCACTCTAACCTCGCTTGCGGCGATGATTGTGTTTC 360 consensus_8310#1 ------------------------------------------------------------ consensus_8310#0 CATCCAGACAGGCTGCAGTGACATAAACATACATAATGTGAACTGTGGACCAGGGCATGG 420 consensus_8310#1 ------------------------------------------------------------ consensus_8310#0 GATCAGCATTGGTGGTCTAGGAAGGTACAACACAAAAGCATGTGTATCCAATGTCACCGT 480 consensus_8310#1 --------------------------TCCCCTCCTGTTGAT-TGCTCTCAACCGCATCAA 33 * * * ** ** *** ** * consensus_8310#0 AAGAGATGTCAACATGTTCAAAACAATGACTG-GTGTCAGAATCAAAACTTGGCAGGGAG 539 consensus_8310#1 ATCTGCAACCAAT-CGGTCTAGCTAATAAGCGTGCGTGCGAGT-GGTGTCCGACAGACAC 91 * * *** * ** * *** * * * ** ** * * *** * consensus_8310#0 GTTCAGGGTTGGTTCAAGGCATAAGGTTCTCAAACATACAAGTGTCAGAAGTTCAAACAC 599 consensus_8310#1 GCCTAATGC--GGTCGACCTCTAGAGTCCACCTCACCTCGATTCTCCGGCCTCTCTAGCC 149 * * * * ** * ** ** * * * * * ** * * * * consensus_8310#0 CTATCATAATAGACCAATTTTACTGTGACAGAACAACTTGCAGAAACCAAACATCAGCAG 659 consensus_8310#1 TTCCCTCACGCGCCCGAACCCGCAGC----------CTTCTATGGGTC--CTTCCACTCT 197 * * * * ** * * * *** * * ** consensus_8310#0 TGGCGGTTTTAGGTGTTCAGTACGAGAATATCAGGGGGACCTTCACAATCAAGCCTGCCC 719 consensus_8310#1 CGAAAATTGTAGCCATTCTTTGCCCAACTCGTAGCTCATCCAACATAGCCGTGCGGG--- 254 * ** *** *** * * * * ** ** ** * * ** * consensus_8310#0 ATTTTGCATGCAGTGATAGCTCGCCTTGTTCAGAGATCACTCTTACTGGAATACAGCTCA 779 consensus_8310#1 ----TGCCTGCACCGATCGCTCGCCTTCTCGAGGTGGCACTCGTGATGTCACGCAGCTCA 310 *** **** *** ********* * ** ***** * ** * ******* consensus_8310#0 AACCCCTGATAGTGCCACAGTATCACCTGTACAACCCATTCTGCTGGCAAGCCTTTGGAG 839 consensus_8310#1 TGCCCCTGATAGTTCCCCAGTATCACCTGTACAACCCATTTTGCTGGCAAGCCTTTGGAG 370 *********** ** *********************** ******************* consensus_8310#0 AGTTGTCCACCCCCACCATCCCTCCCATATCCTGCTTGCAGATCGGCAAACCATCTGGGA 899 consensus_8310#1 AGTTGTNCACCCCCACCATCCCTCCCATATCCTGCTTGCAGATCGGCAAACCATCTGGGA 430 ****** ***************************************************** consensus_8310#0 ACAACGTGATGTCAGATTATGATCTATGTTGAAACTCTCTGAATGAGTGGAAATGCTGTG 959 consensus_8310#1 ACAACGTGATGTCAGATTATGATCTATGTTGAAACTCTCTGAATGAGTGGAAATGCTGTG 490 ************************************************************ consensus_8310#0 ATCCAGGAAATACTATACTCCTGGTCCTCATTGGTTAGGGTGGTCGTCGTGATTCTTCCG 1019 consensus_8310#1 ATCCAGGAAATACTATACTCCTGGTCCTCATTGGTTAGGGTGGTCGTCGTGATTCTTCCG 550 ************************************************************ consensus_8310#0 ACCCCCTTTCTGCACAATCATCGTGTGGTGTATATATATACAGTTTATGCAAGGATAGTA 1079 consensus_8310#1 ACCCCCTTTTTGCACAATCATCGTGTGGTGTATATATATACAGTTTATGCAAGGATAGTA 610 ********* ************************************************** consensus_8310#0 TATGGTTATCAGGACATGTACCAGCTTCCCTCTTGAAGTGAAATGTAGGAATTTGATAAT 1139 consensus_8310#1 TATGGTTATCAGGACATGTACCAGCTTCCCTCTTGAAGTGAAATGTAGAAATTTGATAAT 670 ************************************************ *********** consensus_8310#0 GTAAGGGATAGTGTTCATGCATTGTTCTAGATGCATCATGCATACATACGAGGTAGTACT 1199 consensus_8310#1 GTAAAAAAAAAAAAAA-------------------------------------------- 686 **** * * consensus_8310#0 AGTCACTCTGCTATCAATTTCGGTAATGAAATGGGACCATTCCTCTCTTTCTCAAAAAAA 1259 consensus_8310#1 ------------------------------------------------------------ consensus_8310#0 AAGTACTATTAAGATGGATGAAACAGAAAAAAAAAAAAAA 1299 consensus_8310#1 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||