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Oryza sativa
cluster # 8311 cluster # 8311       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8311#0 length = 819 sequences # 1  
consensus_8311#1 length = 618 sequences # 4  

consensusID : consensus_8311#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 819
fasta sequence
                              [TATATGCTACTAGAAAGGTATAGTCCAAAAGAGAACTGAACTGTTCTCCAAATAAACTTTGCATAATGATATTCCATAAAATAAATGTTGAATAGTATCATTTTTCATACAGAAAAACATTTTAGACTAACATTCTAATTTCGTCTTGCCAAATTGTCCTTGGTTAACACCACCCCTTTAAGTAAATACCACATAAATATCTTGATCTTAAGCAACAACTTAAGCTTCTAATAATCTTATTTCTGTCAATGTAACCATTATTAATTAGAGATAAGTACATTGACCTAACAGAAAAACCAACCACTCTGATGATAACTCCATCTAAAATAATCAGAAGAGTTATTCAACTGGATATGAACAATAGAAACACACAATTCATGTCAATATGTTAGATTCTGACCAACTAAAGCTATGCTAAAAGAAACGTTAAGCGGAACAGAACCCATAACACTAGCAATAGGAGAACTTCTCCTTCTAACAATAGCATATAAAGATGGATATTTATCTCTAAAGACCAAGTTTCCTAACCATTTATCTTCCCAAAATCTTATTTGTTCCCTATTATTCACAATCCAAGAACACATACTTAAGAAAGTATTTTGACTTTCATAAGTCCTGACCAAAAATGAGAATCACATTGTTTCCTATCAACTTGAGTTATAAACTTATTATAAAGTTATTTTCTCTTCAATAAGTCTTGCCAAACACCATTCTCGTTTATTAATTTATACAACCACTTACTTAAAAGGCATTTATTTTGAATCTCTAGATTAAGTACCCCAAACCATCCTGGTCTTCGGGTTGGCAAATAATATCCCA]

[+] EMBL CB628017             [TATATGCTACTAGAAAGGTATAGTCCAAAAGAGAACTGAACTGTTCTCCAAATAAACTTTGCATAATGATATTCCATAAAATAAATGTTGAATAGTATCATTTTTCATACAGAAAAACATTTTAGACTAACATTCTAATTTCGTCTTGCCAAATTGTCCTTGGTTAACACCACCCCTTTAAGTAAATACCACATAAATATCTTGATCTTAAGCAACAACTTAAGCTTCTAATAATCTTATTTCTGTCAATGTAACCATTATTAATTAGAGATAAGTACATTGACCTAACAGAAAAACCAACCACTCTGATGATAACTCCATCTAAAATAATCAGAAGAGTTATTCAACTGGATATGAACAATAGAAACACACAATTCATGTCAATATGTTAGATTCTGACCAACTAAAGCTATGCTAAAAGAAACGTTAAGCGGAACAGAACCCATAACACTAGCAATAGGAGAACTTCTCCTTCTAACAATAGCATATAAAGATGGATATTTATCTCTAAAGACCAAGTTTCCTAACCATTTATCTTCCCAAAATCTTATTTGTTCCCTATTATTCACAATCCAAGAACACATACTTAAGAAAGTATTTTGACTTTCATAAGTCCTGACCAAAAATGAGAATCACATTGTTTCCTATCAACTTGAGTTATAAACTTATTATAAAGTTATTTTCTCTTCAATAAGTCTTGCCAAACACCATTCTCGTTTATTAATTTATACAACCACTTACTTAAAAGGCATTTATTTTGAATCTCTAGATTAAGTACCCCAAACCATCCTGGTCTTCGGGTTGGCAAATAATATCCCA]


>consensus_8311#0 TATATGCTACTAGAAAGGTATAGTCCAAAAGAGAACTGAACTGTTCTCCAAATAAACTTT GCATAATGATATTCCATAAAATAAATGTTGAATAGTATCATTTTTCATACAGAAAAACAT TTTAGACTAACATTCTAATTTCGTCTTGCCAAATTGTCCTTGGTTAACACCACCCCTTTA AGTAAATACCACATAAATATCTTGATCTTAAGCAACAACTTAAGCTTCTAATAATCTTAT TTCTGTCAATGTAACCATTATTAATTAGAGATAAGTACATTGACCTAACAGAAAAACCAA CCACTCTGATGATAACTCCATCTAAAATAATCAGAAGAGTTATTCAACTGGATATGAACA ATAGAAACACACAATTCATGTCAATATGTTAGATTCTGACCAACTAAAGCTATGCTAAAA GAAACGTTAAGCGGAACAGAACCCATAACACTAGCAATAGGAGAACTTCTCCTTCTAACA ATAGCATATAAAGATGGATATTTATCTCTAAAGACCAAGTTTCCTAACCATTTATCTTCC CAAAATCTTATTTGTTCCCTATTATTCACAATCCAAGAACACATACTTAAGAAAGTATTT TGACTTTCATAAGTCCTGACCAAAAATGAGAATCACATTGTTTCCTATCAACTTGAGTTA TAAACTTATTATAAAGTTATTTTCTCTTCAATAAGTCTTGCCAAACACCATTCTCGTTTA TTAATTTATACAACCACTTACTTAAAAGGCATTTATTTTGAATCTCTAGATTAAGTACCC CAAACCATCCTGGTCTTCGGGTTGGCAAATAATATCCCA



consensusID : consensus_8311#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 618
fasta sequence
                              [TAAAATAGAGGCTCCAACAAGTATCAGTTTACTCTTTTTCTTGTCAACCCCTAGAAGCCAACCATAAAAAATATCAGATATGCTACTAGGAAGGTGTAATCCAAAAGAGAACTGGACTGCTATCCAAATAAACTTTGCATAATGACACTCCATAAATAAATGTTGAATAGTCTCATTTTTCATACAGAAACAACATTTTAGACTACCATTCCAATTCCGTCTTGCTAAATTATCCTTGTTAACACCACCTCTTTAAGCAAGTAACACATAAAGATTTTTTATCTTGATCTTGATCTTGCTCCACAGTTGATAAGGCATGCAAAATTAAACATAATAGCAAACTTGTTAATCTCCATCTACCTACTCCTATTAACCAATCATTTCTTGGATTATCTATTTCTTCAATCATTTCCACTTACTTTTATAATACCTGTACTCACCTAACAAATATTTCATTTCGAGATGAAATGCATGTGTTCTCTTTAAAAAACCAAGGATAATGTAAATGCTCACAACACATACACTCACCCTATAAATACATACATGTATACCCTAATTCTTAGCACCTTCGAGATTGAGCGGTAAATCATGAAATTGACAAAGTCGCCATGGGTACCT]

[+] EMBL CF304434             [TAAAATAGAGGCTCCAACAAGTATCAGTTTACTCTTTTTCTTGTCAACCCCTAGAAGCCAACCATAAAAAATATCAGATATGCTACTAGGAAGGTGTAATCCAAAAGAGAACTGGACTGCTATCCAAATAAACTTTGCATAATGACACTCCATAAATAAATGTTGAATAGTCTCATTTTTCATACAGAAACAACATTTTAGACTACCATTCCAATTCCGTCTTGCTAAATTATCCTTGTTAACACCACCTCTTTAAGCAAGTAACACATAAAGATTTTTTATCTTGATCTTGATCTTGCTCCACAGTTGATAAGGCATGCAAAATTAAACATAATAGCAAACTTGTTAATCTCCATCTACCTACTCCTATTAACCAATCATTTCTTGGATTATCTATTTCTTCAATCATTTCCACTTACTTTTATAATACCTGTACTCACCTAACAAATATTTCATTTCGAGATGAAATGCATGTGTTCTCTTTAAAAAACCAAGGATAATGTAAATGCTCACAACACATACACTCACCCTATAAATACATACATGTATACCCTAATTCTTAGCACCTTCGAGATTGAGCGGTAAATCATGAAATTGACAAAGTCGCCATGGGTACCT]
[+] EMBL CF303966             [TAAAATAGAGGCTCCAACAAGTATCAGTTTACTCTTTTTCTTGTCAACCCCTAGAAGCCAACCATAAAAAATATCAGATATGCTACTAGGAAGGTGTAATCCAAAAGAGAACTGGACTGCTATCCAAATAAACTTTGCATAATGACACTCCATAAATAAATGTTGAATAGTCTCATTTTTCATACAGAAACAACATTTTAGACTACCATTCCAATTCCGTCTTGCTAAATTATCCTTGTTAACACCACCTCTTTAAGCAAGTAACACATAAAGATTTTTTATCTTGATCTTGATCTTGCTCCACAGTTGATAAGGCATGCAAAATTAAACATAATAGCAAACTTGTTAATCTCCATCTACCTACTCCTATTAACCAATCATTTCTTGGATTATCTATTTCTTCAATCATTTCCACTTACTTTTATAATACCTGTACTCACCTAACAAATATTTCATTTCGAGATGAAATGCATGTGTTCTCTTTAAAAAACCAAGGATAATGTAAATGCTCACAACACATACACTCACCCTATAAATACATACATGTATACCCTAATTCTTAGCACCTTCGAGATTGAGCGGTAAATCATGAAATTGACAAAGTCGCCATGGGTACC ]
[+] EMBL CF303401             [TAAAATAGAGGCTCCAACAAGTATCAGTTTACTCTTTTTCTTGTCAACCCCTAGAAGCCAACCATAAAAAATATCAGATATGCTACTAGGAAGGTGTAATCCAAAAGAGAACTGGACTGCTATCCAAATAAACTTTGCATAATGACACTCCATAAATAAATGTTGAATAGTCTCATTTTTCATACAGAAACAACATTTTAGACTACCATTCCAATTCCGTCTTGCTAAATTATCCTTGTTAACACCACCTCTTTAAGCAAGTAACACATAAAGATTTTTTATCTTGATCTTGATCTTGCTCCACAGTTGATAAGGCATGCAAAATTAAACATAATAGCAAACTTGTTAATCTCCATCTACCTACTCCTATTAACCAATCATTTCTTGGATTATCTATTTCTTCAATCATTTCCACTTACTTTTATAATACCTGTACTCACCTAACAAATATTTCATTTCGAGATGAAATGCATGTGTTCTCTTTAAAAAACCAAGGATAATGTAAATGCTCACAACACATACACTCACCCTATAAATACATACATGTA                                                                      ]
[+] EMBL CF304864             [TAAAATAGAGGCTCCAACAAGTATCAGTTTACTCTTTTTCTTGTCAACCCCTAGAAGCCAACCATAAAAAATATCAGATATGCTACTAGGAAGGTGTAATCCAAAAGAGAACTGGACTGCTATCCAAATAAACTTTGCATAATGACACTCCATAAATAAATGTTGAATAGTCTCATTTTTCATACAGAAACAACATTTTAGACTACCATTCCAATTCCGTCTTGCTAAATTATCCTTGTTAACACCACCTCTTTAAGCAAGTAACACATAAAGATTTTTTATCTTGATCTTGATCTTGCTCCACAGTTGATAAGGCATGCAAAATTAAACATAATAGCAAACTTGTTAATCTCCATCTACCTACTCCTATTAACCAATCATTTCTTGGATTATCTATTTCTTCAATCATTTCCACTTACTTTTATAATACCTGTACTCACCTAACAAATATTTCATTTCGAGA                                                                                                                                                           ]


>consensus_8311#1 TAAAATAGAGGCTCCAACAAGTATCAGTTTACTCTTTTTCTTGTCAACCCCTAGAAGCCA ACCATAAAAAATATCAGATATGCTACTAGGAAGGTGTAATCCAAAAGAGAACTGGACTGC TATCCAAATAAACTTTGCATAATGACACTCCATAAATAAATGTTGAATAGTCTCATTTTT CATACAGAAACAACATTTTAGACTACCATTCCAATTCCGTCTTGCTAAATTATCCTTGTT AACACCACCTCTTTAAGCAAGTAACACATAAAGATTTTTTATCTTGATCTTGATCTTGCT CCACAGTTGATAAGGCATGCAAAATTAAACATAATAGCAAACTTGTTAATCTCCATCTAC CTACTCCTATTAACCAATCATTTCTTGGATTATCTATTTCTTCAATCATTTCCACTTACT TTTATAATACCTGTACTCACCTAACAAATATTTCATTTCGAGATGAAATGCATGTGTTCT CTTTAAAAAACCAAGGATAATGTAAATGCTCACAACACATACACTCACCCTATAAATACA TACATGTATACCCTAATTCTTAGCACCTTCGAGATTGAGCGGTAAATCATGAAATTGACA AAGTCGCCATGGGTACCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8311#0      ------------------------------------------------------------
consensus_8311#1      TAAAATAGAGGCTCCAACAAGTATCAGTTTACTCTTTTTCTTGTCAACCCCTAGAAGCCA 60
                                                                                  

consensus_8311#0      ----------------TATATGCTACTAGAAAGGTATAGTCCAAAAGAGAACTGAACTGT 44
consensus_8311#1      ACCATAAAAAATATCAGATATGCTACTAGGAAGGTGTAATCCAAAAGAGAACTGGACTGC 120
                                       ************ ***** ** *************** **** 

consensus_8311#0      TCTCCAAATAAACTTTGCATAATGATATTCCATAAAATAAATGTTGAATAGTATCATTTT 104
consensus_8311#1      TATCCAAATAAACTTTGCATAATGACACTCCATAAA-TAAATGTTGAATAGTCTCATTTT 179
                      * *********************** * ******** *************** *******

consensus_8311#0      TCATACAGAAA-AACATTTTAGACTAACATTCTAATTTCGTCTTGCCAAATTGTCCTTGG 163
consensus_8311#1      TCATACAGAAACAACATTTTAGACTACCATTCCAATTCCGTCTTGCTAAATTATCCTTG- 238
                      *********** ************** ***** **** ******** ***** ****** 

consensus_8311#0      TTAACACCACCCCTTTAAGTAAATACCACATAAATATCTTG-ATCTTAAGCAACAACTTA 222
consensus_8311#1      TTAACACCACCTCTTTAAGCAAGTAACACATAAAGATTTTTTATCTTGATCTTGATCTTG 298
                      *********** ******* ** ** ******** ** **  ***** * *   * *** 

consensus_8311#0      AGCTTCTAATAATCTTATTTCTGTCAATGTAACCATTATTAATTAGAGATAAGTACATTG 282
consensus_8311#1      CTCCACAGTTGATAAGGCATGCAAAATTAAACATAATAGCAAACTTGTTAATCTCCATCT 358
                        *  *   * **      *     * *  *   * **  **        *  * ***  

consensus_8311#0      ACCTAA-CAGAAAAACCAACCACTCTGATGATAACTCCATCTAAAATAATCAGAAGAGTT 341
consensus_8311#1      ACCTACTCCTATTAACCAATCATTTCTTGGATTA-TCTATTTCTT-CAATCAT------- 409
                      *****  *  *  ****** ** *     *** * ** ** *     *****        

consensus_8311#0      ATTCAACTGGATATGAACAATAGAAACACACAATTCATGTCAATATGTTAGATTCTGACC 401
consensus_8311#1      -TTCCACTTACTTTTA-TAATACCTGTACTCACCTAACA--AATATTTCATTTCGAGATG 465
                       *** ***   * * *  ****     ** **  * *    ***** * *  *   **  

consensus_8311#0      AACTAAAGCTATGCTAAAAGAAACGTTAAGCGGAACAGAACCCATAACACTAGCAATAGG 461
consensus_8311#1      AAATGCATGTGTTCTCTTTAAAAAACCAAGGATAATGTAA------ATGCTCACAACACA 519
                      ** *  *  * * **     ***    ***   **   **      *  **  *** *  

consensus_8311#0      AGAACTTCTCCTTCTAACAATAGCATATAAAGATGGATATTTATCTCTAAAGACCAAGTT 521
consensus_8311#1      TACACTCACCCTATAAATACATACATGTATACCCTAATTCTTAGCACCTTCGAGATTGAG 579
                         ***   ***   ** *    *** ** *     **  *** * *    **    *  

consensus_8311#0      TCCTAACCATTTATCTTCCCAAAATCTTATTTGTTCCCTATTATTCACAATCCAAGAACA 581
consensus_8311#1      CGGTAAATCATGAAATTGACAAAGTCGCCATGGGTACCT--------------------- 618
                         ***    * *  **  **** **    * * * ***                     

consensus_8311#0      CATACTTAAGAAAGTATTTTGACTTTCATAAGTCCTGACCAAAAATGAGAATCACATTGT 641
consensus_8311#1      ------------------------------------------------------------
                                                                                  

consensus_8311#0      TTCCTATCAACTTGAGTTATAAACTTATTATAAAGTTATTTTCTCTTCAATAAGTCTTGC 701
consensus_8311#1      ------------------------------------------------------------
                                                                                  

consensus_8311#0      CAAACACCATTCTCGTTTATTAATTTATACAACCACTTACTTAAAAGGCATTTATTTTGA 761
consensus_8311#1      ------------------------------------------------------------
                                                                                  

consensus_8311#0      ATCTCTAGATTAAGTACCCCAAACCATCCTGGTCTTCGGGTTGGCAAATAATATCCCA 819
consensus_8311#1      ----------------------------------------------------------
                                                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)