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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8311#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 819 fasta sequence
[TATATGCTACTAGAAAGGTATAGTCCAAAAGAGAACTGAACTGTTCTCCAAATAAACTTTGCATAATGATATTCCATAAAATAAATGTTGAATAGTATCATTTTTCATACAGAAAAACATTTTAGACTAACATTCTAATTTCGTCTTGCCAAATTGTCCTTGGTTAACACCACCCCTTTAAGTAAATACCACATAAATATCTTGATCTTAAGCAACAACTTAAGCTTCTAATAATCTTATTTCTGTCAATGTAACCATTATTAATTAGAGATAAGTACATTGACCTAACAGAAAAACCAACCACTCTGATGATAACTCCATCTAAAATAATCAGAAGAGTTATTCAACTGGATATGAACAATAGAAACACACAATTCATGTCAATATGTTAGATTCTGACCAACTAAAGCTATGCTAAAAGAAACGTTAAGCGGAACAGAACCCATAACACTAGCAATAGGAGAACTTCTCCTTCTAACAATAGCATATAAAGATGGATATTTATCTCTAAAGACCAAGTTTCCTAACCATTTATCTTCCCAAAATCTTATTTGTTCCCTATTATTCACAATCCAAGAACACATACTTAAGAAAGTATTTTGACTTTCATAAGTCCTGACCAAAAATGAGAATCACATTGTTTCCTATCAACTTGAGTTATAAACTTATTATAAAGTTATTTTCTCTTCAATAAGTCTTGCCAAACACCATTCTCGTTTATTAATTTATACAACCACTTACTTAAAAGGCATTTATTTTGAATCTCTAGATTAAGTACCCCAAACCATCCTGGTCTTCGGGTTGGCAAATAATATCCCA]
[+] EMBL CB628017 [TATATGCTACTAGAAAGGTATAGTCCAAAAGAGAACTGAACTGTTCTCCAAATAAACTTTGCATAATGATATTCCATAAAATAAATGTTGAATAGTATCATTTTTCATACAGAAAAACATTTTAGACTAACATTCTAATTTCGTCTTGCCAAATTGTCCTTGGTTAACACCACCCCTTTAAGTAAATACCACATAAATATCTTGATCTTAAGCAACAACTTAAGCTTCTAATAATCTTATTTCTGTCAATGTAACCATTATTAATTAGAGATAAGTACATTGACCTAACAGAAAAACCAACCACTCTGATGATAACTCCATCTAAAATAATCAGAAGAGTTATTCAACTGGATATGAACAATAGAAACACACAATTCATGTCAATATGTTAGATTCTGACCAACTAAAGCTATGCTAAAAGAAACGTTAAGCGGAACAGAACCCATAACACTAGCAATAGGAGAACTTCTCCTTCTAACAATAGCATATAAAGATGGATATTTATCTCTAAAGACCAAGTTTCCTAACCATTTATCTTCCCAAAATCTTATTTGTTCCCTATTATTCACAATCCAAGAACACATACTTAAGAAAGTATTTTGACTTTCATAAGTCCTGACCAAAAATGAGAATCACATTGTTTCCTATCAACTTGAGTTATAAACTTATTATAAAGTTATTTTCTCTTCAATAAGTCTTGCCAAACACCATTCTCGTTTATTAATTTATACAACCACTTACTTAAAAGGCATTTATTTTGAATCTCTAGATTAAGTACCCCAAACCATCCTGGTCTTCGGGTTGGCAAATAATATCCCA]
consensusID : consensus_8311#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 618 fasta sequence
[TAAAATAGAGGCTCCAACAAGTATCAGTTTACTCTTTTTCTTGTCAACCCCTAGAAGCCAACCATAAAAAATATCAGATATGCTACTAGGAAGGTGTAATCCAAAAGAGAACTGGACTGCTATCCAAATAAACTTTGCATAATGACACTCCATAAATAAATGTTGAATAGTCTCATTTTTCATACAGAAACAACATTTTAGACTACCATTCCAATTCCGTCTTGCTAAATTATCCTTGTTAACACCACCTCTTTAAGCAAGTAACACATAAAGATTTTTTATCTTGATCTTGATCTTGCTCCACAGTTGATAAGGCATGCAAAATTAAACATAATAGCAAACTTGTTAATCTCCATCTACCTACTCCTATTAACCAATCATTTCTTGGATTATCTATTTCTTCAATCATTTCCACTTACTTTTATAATACCTGTACTCACCTAACAAATATTTCATTTCGAGATGAAATGCATGTGTTCTCTTTAAAAAACCAAGGATAATGTAAATGCTCACAACACATACACTCACCCTATAAATACATACATGTATACCCTAATTCTTAGCACCTTCGAGATTGAGCGGTAAATCATGAAATTGACAAAGTCGCCATGGGTACCT]
[+] EMBL CF304434 [TAAAATAGAGGCTCCAACAAGTATCAGTTTACTCTTTTTCTTGTCAACCCCTAGAAGCCAACCATAAAAAATATCAGATATGCTACTAGGAAGGTGTAATCCAAAAGAGAACTGGACTGCTATCCAAATAAACTTTGCATAATGACACTCCATAAATAAATGTTGAATAGTCTCATTTTTCATACAGAAACAACATTTTAGACTACCATTCCAATTCCGTCTTGCTAAATTATCCTTGTTAACACCACCTCTTTAAGCAAGTAACACATAAAGATTTTTTATCTTGATCTTGATCTTGCTCCACAGTTGATAAGGCATGCAAAATTAAACATAATAGCAAACTTGTTAATCTCCATCTACCTACTCCTATTAACCAATCATTTCTTGGATTATCTATTTCTTCAATCATTTCCACTTACTTTTATAATACCTGTACTCACCTAACAAATATTTCATTTCGAGATGAAATGCATGTGTTCTCTTTAAAAAACCAAGGATAATGTAAATGCTCACAACACATACACTCACCCTATAAATACATACATGTATACCCTAATTCTTAGCACCTTCGAGATTGAGCGGTAAATCATGAAATTGACAAAGTCGCCATGGGTACCT]
[+] EMBL CF303966 [TAAAATAGAGGCTCCAACAAGTATCAGTTTACTCTTTTTCTTGTCAACCCCTAGAAGCCAACCATAAAAAATATCAGATATGCTACTAGGAAGGTGTAATCCAAAAGAGAACTGGACTGCTATCCAAATAAACTTTGCATAATGACACTCCATAAATAAATGTTGAATAGTCTCATTTTTCATACAGAAACAACATTTTAGACTACCATTCCAATTCCGTCTTGCTAAATTATCCTTGTTAACACCACCTCTTTAAGCAAGTAACACATAAAGATTTTTTATCTTGATCTTGATCTTGCTCCACAGTTGATAAGGCATGCAAAATTAAACATAATAGCAAACTTGTTAATCTCCATCTACCTACTCCTATTAACCAATCATTTCTTGGATTATCTATTTCTTCAATCATTTCCACTTACTTTTATAATACCTGTACTCACCTAACAAATATTTCATTTCGAGATGAAATGCATGTGTTCTCTTTAAAAAACCAAGGATAATGTAAATGCTCACAACACATACACTCACCCTATAAATACATACATGTATACCCTAATTCTTAGCACCTTCGAGATTGAGCGGTAAATCATGAAATTGACAAAGTCGCCATGGGTACC ]
[+] EMBL CF303401 [TAAAATAGAGGCTCCAACAAGTATCAGTTTACTCTTTTTCTTGTCAACCCCTAGAAGCCAACCATAAAAAATATCAGATATGCTACTAGGAAGGTGTAATCCAAAAGAGAACTGGACTGCTATCCAAATAAACTTTGCATAATGACACTCCATAAATAAATGTTGAATAGTCTCATTTTTCATACAGAAACAACATTTTAGACTACCATTCCAATTCCGTCTTGCTAAATTATCCTTGTTAACACCACCTCTTTAAGCAAGTAACACATAAAGATTTTTTATCTTGATCTTGATCTTGCTCCACAGTTGATAAGGCATGCAAAATTAAACATAATAGCAAACTTGTTAATCTCCATCTACCTACTCCTATTAACCAATCATTTCTTGGATTATCTATTTCTTCAATCATTTCCACTTACTTTTATAATACCTGTACTCACCTAACAAATATTTCATTTCGAGATGAAATGCATGTGTTCTCTTTAAAAAACCAAGGATAATGTAAATGCTCACAACACATACACTCACCCTATAAATACATACATGTA ]
[+] EMBL CF304864 [TAAAATAGAGGCTCCAACAAGTATCAGTTTACTCTTTTTCTTGTCAACCCCTAGAAGCCAACCATAAAAAATATCAGATATGCTACTAGGAAGGTGTAATCCAAAAGAGAACTGGACTGCTATCCAAATAAACTTTGCATAATGACACTCCATAAATAAATGTTGAATAGTCTCATTTTTCATACAGAAACAACATTTTAGACTACCATTCCAATTCCGTCTTGCTAAATTATCCTTGTTAACACCACCTCTTTAAGCAAGTAACACATAAAGATTTTTTATCTTGATCTTGATCTTGCTCCACAGTTGATAAGGCATGCAAAATTAAACATAATAGCAAACTTGTTAATCTCCATCTACCTACTCCTATTAACCAATCATTTCTTGGATTATCTATTTCTTCAATCATTTCCACTTACTTTTATAATACCTGTACTCACCTAACAAATATTTCATTTCGAGA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8311#0 ------------------------------------------------------------
consensus_8311#1 TAAAATAGAGGCTCCAACAAGTATCAGTTTACTCTTTTTCTTGTCAACCCCTAGAAGCCA 60
consensus_8311#0 ----------------TATATGCTACTAGAAAGGTATAGTCCAAAAGAGAACTGAACTGT 44
consensus_8311#1 ACCATAAAAAATATCAGATATGCTACTAGGAAGGTGTAATCCAAAAGAGAACTGGACTGC 120
************ ***** ** *************** ****
consensus_8311#0 TCTCCAAATAAACTTTGCATAATGATATTCCATAAAATAAATGTTGAATAGTATCATTTT 104
consensus_8311#1 TATCCAAATAAACTTTGCATAATGACACTCCATAAA-TAAATGTTGAATAGTCTCATTTT 179
* *********************** * ******** *************** *******
consensus_8311#0 TCATACAGAAA-AACATTTTAGACTAACATTCTAATTTCGTCTTGCCAAATTGTCCTTGG 163
consensus_8311#1 TCATACAGAAACAACATTTTAGACTACCATTCCAATTCCGTCTTGCTAAATTATCCTTG- 238
*********** ************** ***** **** ******** ***** ******
consensus_8311#0 TTAACACCACCCCTTTAAGTAAATACCACATAAATATCTTG-ATCTTAAGCAACAACTTA 222
consensus_8311#1 TTAACACCACCTCTTTAAGCAAGTAACACATAAAGATTTTTTATCTTGATCTTGATCTTG 298
*********** ******* ** ** ******** ** ** ***** * * * ***
consensus_8311#0 AGCTTCTAATAATCTTATTTCTGTCAATGTAACCATTATTAATTAGAGATAAGTACATTG 282
consensus_8311#1 CTCCACAGTTGATAAGGCATGCAAAATTAAACATAATAGCAAACTTGTTAATCTCCATCT 358
* * * ** * * * * * ** ** * * ***
consensus_8311#0 ACCTAA-CAGAAAAACCAACCACTCTGATGATAACTCCATCTAAAATAATCAGAAGAGTT 341
consensus_8311#1 ACCTACTCCTATTAACCAATCATTTCTTGGATTA-TCTATTTCTT-CAATCAT------- 409
***** * * ****** ** * *** * ** ** * *****
consensus_8311#0 ATTCAACTGGATATGAACAATAGAAACACACAATTCATGTCAATATGTTAGATTCTGACC 401
consensus_8311#1 -TTCCACTTACTTTTA-TAATACCTGTACTCACCTAACA--AATATTTCATTTCGAGATG 465
*** *** * * * **** ** ** * * ***** * * * **
consensus_8311#0 AACTAAAGCTATGCTAAAAGAAACGTTAAGCGGAACAGAACCCATAACACTAGCAATAGG 461
consensus_8311#1 AAATGCATGTGTTCTCTTTAAAAAACCAAGGATAATGTAA------ATGCTCACAACACA 519
** * * * * ** *** *** ** ** * ** *** *
consensus_8311#0 AGAACTTCTCCTTCTAACAATAGCATATAAAGATGGATATTTATCTCTAAAGACCAAGTT 521
consensus_8311#1 TACACTCACCCTATAAATACATACATGTATACCCTAATTCTTAGCACCTTCGAGATTGAG 579
*** *** ** * *** ** * ** *** * * ** *
consensus_8311#0 TCCTAACCATTTATCTTCCCAAAATCTTATTTGTTCCCTATTATTCACAATCCAAGAACA 581
consensus_8311#1 CGGTAAATCATGAAATTGACAAAGTCGCCATGGGTACCT--------------------- 618
*** * * ** **** ** * * * ***
consensus_8311#0 CATACTTAAGAAAGTATTTTGACTTTCATAAGTCCTGACCAAAAATGAGAATCACATTGT 641
consensus_8311#1 ------------------------------------------------------------
consensus_8311#0 TTCCTATCAACTTGAGTTATAAACTTATTATAAAGTTATTTTCTCTTCAATAAGTCTTGC 701
consensus_8311#1 ------------------------------------------------------------
consensus_8311#0 CAAACACCATTCTCGTTTATTAATTTATACAACCACTTACTTAAAAGGCATTTATTTTGA 761
consensus_8311#1 ------------------------------------------------------------
consensus_8311#0 ATCTCTAGATTAAGTACCCCAAACCATCCTGGTCTTCGGGTTGGCAAATAATATCCCA 819
consensus_8311#1 ----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||