These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8314#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1023 fasta sequence [CGGACCATCGTTGTCTCGTTCTCCTCTTCTTCCGTCGCCGGCGCGGGGAGCTGCTCGTCGCCGGCGCGCGGTGATGGCGGAGGACTCCGGCGCCATCCTCCGCCACATATCCTCCCTCAAGGACATGCTTGACAAGTCTCATCATGGTGGATCCATTCGCCAGCGAAGGGAGTCAGTATGACCCATCCAAGGATCCTGAACGGAAGTCTAAGTCAAAAGATCCGGGATGGAAATACTGCTTCTGGCCAGACTTGAGCAACAGAGATTTGATCCACTGCTCGCTTTGTGGCAAGCAAATGATTGCAGGATTCAAGAGAGTCAGCAACATCTTGCAACAGGATTTGGAGATGTGCAGTGCAGCGGTGCCCCAATACTACCACAGCTATCATGAAAGAGATGAGAGCATATCTGAAGAAGAATTCGAGAATTGGCAAATATCTCAACTTACACCCCTCCTCTTATCGGCCAATGCCAAGTTCTGAGACAGCTGCCAAAAGGAAACAAGCTCCTGACGCTCTTCAATTTGGACGACCAACCCCAAAACAAACAACATCTGTTGCTTCTATGCTTTGCAAGGCACCTGAAGAGGTTGACGAAGATATCCATGCCAAGGGGCCTTCTCAATCTACCATTGAGCAATGTACAAGGCAGTACAATGGAAAACAAATGGTCCATCAGCAAATAGCAAATTTGTTTTCTGAATTTGACATACCATTTGCTGCTGCGCACTCAAGGAGCTTTGAGACTATGGTTCAATCCATCATACAATTTGGACCTGGTTATAAGCCTCCTAGTCATCAGGATTGGTGGGTTCCGTTGCTTGTTGGGGCAAAGGAGACTACGTTGGGAGCCAGTGGTAATATGGGAGATTTGAATGAATCGGACGATGATATTTGGTAGTTAAGACCAGAATCATTTACCTATGATGTCATGCTAGTATACTATTATGCTGTTTATCTGTCTCGGAGAACGCTGATGCTTATGACCTATGTACTTTTGGTGGATGATTTTTGCTATATTTAT] [+] EMBL AK108098 [CGGACCATCGTTGTCTCGTTCTCCTCTTCTTCCGTCGCCGGCGCGGGGAGCTGCTCGTCGCCGGCGCGCGGTGATGGCGGAGGACTCCGGCGCCATCCTCCGCCACATATCCTCCCTCAAGGACATGCTTGACAAGTCTCATCATGGTGGATCCATTCGCCAGCGAAGGGAGTCAGTATGACCCATCCAAGGATCCTGAACGGAAGTCTAAGTCAAAAGATCCGGGATGGAAATACTGCTTCTGGCCAGACTTGAGCAACAGAGATTTGATCCACTGCTCGCTTTGTGGCAAGCAAATGATTGCAGGATTCAAGAGAGTCAGCAACATCTTGCAACAGGATTTGGAGATGTGCAGTGCAGCGGTGCCCCAATACTACCACAGCTATCATGAAAGAGATGAGAGCATATCTGAAGAAGAATTCGAGAATTGGCAAATATCTCAACTTACACCCCTCCTCTTATCGGCCAATGCCAAGTTCTGAGACAGCTGCCAAAAGGAAACAAGCTCCTGACGCTCTTCAATTTGGACGACCAACCCCAAAACAAACAACATCTGTTGCTTCTATGCTTTGCAAGGCACCTGAAGAGGTTGACGAAGATATCCATGCCAAGGGGCCTTCTCAATCTACCATTGAGCAATGTACAAGGCAGTACAATGGAAAACAAATGGTCCATCAGCAAATAGCAAATTTGTTTTCTGAATTTGACATACCATTTGCTGCTGCGCACTCAAGGAGCTTTGAGACTATGGTTCAATCCATCATACAATTTGGACCTGGTTATAAGCCTCCTAGTCATCAGGATTGGTGGGTTCCGTTGCTTGTTGGGGCAAAGGAGACTACGTTGGGAGCCAGTGGTAATATGGGAGATTTGAATGAATCGGACGATGATATTTGGTAGTTAAGACCAGAATCATTTACCTATGATGTCATGCTAGTATACTATTATGCTGTTTATCTGTCTCGGAGAACGCTGATGCTTATGACCTATGTACTTTTGGTGGATGATTTTTGCTATATTTAT] consensusID : consensus_8314#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 943 fasta sequence [CTTCCGTCGCCGGCGCGGGGAGCTGCTCGTCGCCGGCGCGCGGTGATGGCGGAGGACTCCGGCGCCATCCTCCGCCACATATCCTCCCTCAAGGACATGCTTGACAAGGTCAACGAAGAGATTGAAGAGAATATTCGAAAGACAAGGGAAATAGAGTCAGAAATAGTGAAGCATTCTGAAACTGAAAAGGAGTATATCATGAAAGAGCCTGAACTAATGAAAGGGGTATCAATTGCTGAGTTTGAACTCAATGGCATTATACAAGTGGCTGCTGCTGAAACAGACTCACTTAAAGTGATGGAAGGCAATTTGGAATTCCAGAAAGCTACTCTGAATGGAATTAGGAAAAGATTTTCTAATAAAATGGAAAAGTTCATCAATGAATCTAAGGGGTTCCAGGCTAACATGCTTGGAGATTTGAACAAGGATTTAGTTCTTTTACTTAAGGAGAAAGGTTCGCTAGGGGATGAGAGTGAGAACTTGAAAATGAAGATCAACGCAATAGAAAGTTCGTCACGTGATTACTTTGCTGACATTCTTGAGGAGCTAAATATGGAAAATTCAGTTTTGGAATCTGAATTACAGTATAAGATTTCAGAATACATGGATGTTATGAAGGATATAAGCAATCTGAAGGCTCTATTTAGTTCGATCAATTCTTAGTAACAATATTCATCGGTGGAGGTATCCTACCTAATCACGAAGTATATGTAGAGGCATAGCATGTAGCATTCTGGCTGGAGTAAGAATTCCCAATTTTGTTTTAGAGCATTCCTGATTTTTCTCCGTTCAAGGAATCATTATCTTGTATAGAGCAGAGTGCGAATAAAATCAAATTGGTTTTGCTTTACAAATTGGCCCTTGCACCTATCAAATCAAATTGGTTTGGCTTTACTGGGCCACCTCTTGTGTATTTTCTTAGATCACCCGTGGCAATGAAATG] [+] EMBL AK069275 [CTTCCGTCGCCGGCGCGGGGAGCTGCTCGTCGCCGGCGCGCGGTGATGGCGGAGGACTCCGGCGCCATCCTCCGCCACATATCCTCCCTCAAGGACATGCTTGACAAGGTCAACGAAGAGATTGAAGAGAATATTCGAAAGACAAGGGAAATAGAGTCAGAAATAGTGAAGCATTCTGAAACTGAAAAGGAGTATATCATGAAAGAGCCTGAACTAATGAAAGGGGTATCAATTGCTGAGTTTGAACTCAATGGCATTATACAAGTGGCTGCTGCTGAAACAGACTCACTTAAAGTGATGGAAGGCAATTTGGAATTCCAGAAAGCTACTCTGAATGGAATTAGGAAAAGATTTTCTAATAAAATGGAAAAGTTCATCAATGAATCTAAGGGGTTCCAGGCTAACATGCTTGGAGATTTGAACAAGGATTTAGTTCTTTTACTTAAGGAGAAAGGTTCGCTAGGGGATGAGAGTGAGAACTTGAAAATGAAGATCAACGCAATAGAAAGTTCGTCACGTGATTACTTTGCTGACATTCTTGAGGAGCTAAATATGGAAAATTCAGTTTTGGAATCTGAATTACAGTATAAGATTTCAGAATACATGGATGTTATGAAGGATATAAGCAATCTGAAGGCTCTATTTAGTTCGATCAATTCTTAGTAACAATATTCATCGGTGGAGGTATCCTACCTAATCACGAAGTATATGTAGAGGCATAGCATGTAGCATTCTGGCTGGAGTAAGAATTCCCAATTTTGTTTTAGAGCATTCCTGATTTTTCTCCGTTCAAGGAATCATTATCTTGTATAGAGCAGAGTGCGAATAAAATCAAATTGGTTTTGCTTTACAAATTGGCCCTTGCACCTATCAAATCAAATTGGTTTGGCTTTACTGGGCCACCTCTTGTGTATTTTCTTAGATCACCCGTGGCAATGAAATG] [+] EMBL CA998470 [ GAGGACTCCGGCGCCATCCTCCGCCACATATCCTCCCTCAAGGACATGCTTGACAAGGTCAACGAAGAGATTGAAGAGAATATTCAAAAGACAAGGGAAATAGAGTCAGAAATAGTGAAGCATTCTGAAACTGAAAAGGAGTATATCATGAAAGAGTCTGAACTAATGAAAGGGGTATCAATTGCTGAGTTTGAACTCAATGGCATTATACAAGTGGCTGCTGCTGAAACAGACTCACTTAAAGTGATGGAAGGCAATTTGGAATTCCAGAAAGCTACTCTGAATGGAATTAGGAAAAGATTTTCTAATAAAATGGAAAAGTTCATCAATGAATCTAAGGGGTTCCAGGCTAACATGCTTGGAGATTTGAACAAGGATTTAGTTCTTTTACTTAAGGAGAAAGGTTCGCTAGGGGATGAGAGTGAGAACTTGAAAATGAAGATCAACGCAATAGAAAGTTCGTCACGTGATTACTTTGCTGACATTCTTGAGGAGCTAAATATGGAAAATTCAGTTTAGGAA ] consensusID : consensus_8314#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 620 fasta sequence [GAGAACTTGAAAATGAAGATCACGCAATAGAAAGTTCGTCACGTGGTTACTTTGCTGACATTCTTGAGGAGCTAAATATGGAAAATTCAGTTTTGGAATCTGAATTACAGTATAAGATTTCAGAATACATGGATGTTATGAAGGATATAAGCAATCTGAAGGCTCTATTTAGTTCGATCAATTCTTAGTAACAATATTCATCGGTGGAGGTAACTGGATATTTAATTAGGCTCGACACGGTTGTCTGTGATAAAAAATACGAAGTTTTTTCTGATTGGCTGTTTTTGTTCTCCTGCGTAGGTATCCTACCTAATCACGAAGTATATGTAGAGGCATAGCATGTAGCATTCTGGCTGGAGTAAGAATTCCCAATTTTGTTTTAGAGCATTCCTGATTTTTCTCCGTTCAAGGAATCATTATCTTGTATAGAGCAGAGTGCGAATAAAATCAAATTGGTTTTGCTTTACAAATTGGCCCTTGCACCTATCAAATCAAATTGGTTTGGCTTTACTGGGCCACCTCTTGTATATTTTCTTAGATCACCCGTGGCAATGAAATGAAGATCGTCCACATTGCATCAAGGTGAATCATCGTAAAAAAAAAAAAAAAAAGAAGACCAA] [+] EMBL CA765699 [GAGAACTTGAAAATGAAGATCACGCAATAGAAAGTTCGTCACGTGGTTACTTTGCTGACATTCTTGAGGAGCTAAATATGGAAAATTCAGTTTTGGAATCTGAATTACAGTATAAGATTTCAGAATACATGGATGTTATGAAGGATATAAGCAATCTGAAGGCTCTATTTAGTTCGATCAATTCTTAGTAACAATATTCATCGGTGGAGGTAACTGGATATTTAATTAGGCTCGACACGGTTGTCTGTGATAAAAAATACGAAGTTTTTTCTGATTGGCTGTTTTTGTTCTCCTGCGTAGGTATCCTACCTAATCACGAAGTATATGTAGAGGCATAGCATGTAGCATTCTGGCTGGAGTAAGAATTCCCAATTTTGTTTTAGAGCATTCCTGATTTTTCTCCGTTCAAGGAATCATTATCTTGTATAGAGCAGAGTGCGAATAAAATCAAATTGGTTTTGCTTTACAAATTGGCCCTTGCACCTATCAAATCAAATTGGTTTGGCTTTACTGGGCCACCTCTTGTATATTTTCTTAGATCACCCGTGGCAATGAAATGAAGATCGTCCACATTGCATCAAGGTGAA ] [+] EMBL CB096985 [ aaggggCAGTTTTGGAATCTGAATTACAGTATAAGATTTCAGAATACATGGATGTTATGAAGGATATAAGCAATCTGAAGGCTCTATTTAGTTCGATCAATTCTTAGTAACAATATTCATCGGTGGAGGTAACTGGATGTTTAATTAGGCTCGACACGGTTGTCTGTGATAAAAAATACGAAGTTTTTTCTGATTGGCTGTTTTTGTTCTCCTGCGTAGGTATCCTACCTAATCACGAAGTATATGTAGAGGCATAGCATGTAGCATTCTGGCTGGAGTAAGAATTCCCAATTTTGTTTTAGAGCATTCCTGATTTTTCTCCGTTCAAGGAATCATTATCTTGTATAGAGCAGAGTGCGAATAAAATCAAATTGGTTTTGCTTTACAAATTGGCCCTTGCACCTATCAAATCAAATTGGTTTGGCTTTACTGGGCCACCTCTTGTATATTTTCTTAGATCACCCGTGGCAATGAAATGAAGATCGTCCACATTGCATCAAGGTGAATCATCGTAAAAAAAAAAAAAAAAAGAAGACCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8314#1 ----------------------------CTTCCGTCGCCGGCGCGGGGAGCTGCTCGTCG 32 consensus_8314#2 ------------------------------------------------------------ consensus_8314#0 CGGACCATCGTTGTCTCGTTCTCCTCTTCTTCCGTCGCCGGCGCGGGGAGCTGCTCGTCG 60 consensus_8314#1 CCGGCGCGCGGTGATGGCGGAGGACTCCGGCGCCATCCTCCGCCACATATCCTCCCTCAA 92 consensus_8314#2 ------------------------------------------------------------ consensus_8314#0 CCGGCGCGCGGTGATGGCGGAGGACTCCGGCGCCATCCTCCGCCACATATCCTCCCTCAA 120 consensus_8314#1 GGACATGCTTGACAAGGTCAACGAAGAGATTGAAGAGAATATTCGAAAGACAAGGGAAAT 152 consensus_8314#2 ------------------------------------------------------------ consensus_8314#0 GGACATGCTTGACAAGTCTCATCA------TGGTGGATCCATTCGCCAGCGAAGGGAGTC 174 consensus_8314#1 AGAGTCAGAAATAGTGAAGCATTCTGAAACTGAAAAGGAGTATATCATGAAAGAGCCTGA 212 consensus_8314#2 ------------------------------------------------------------ consensus_8314#0 AGTAT--GACCCATCCAAGGATCCTGAAC------GGAAGTCTAAGTCAAAAGATCCGGG 226 consensus_8314#1 ACTAATGAAAGGGGTATCAATTGCTGAGTTTGAACTCAATGGCATTATACAAGTGGCTGC 272 consensus_8314#2 ------------------------------------------------------------ consensus_8314#0 ----ATGGAAATACTGCTTCTGGCCAGACTTGAGCAACAGAGATTTGATCCACTGCTCGC 282 consensus_8314#1 TGCTGAAACAGACTCACTTAAAGTGATGGAAGGCAATTTGGAATTCCAGAAAGCTACTCT 332 consensus_8314#2 ------------------------------------------------------------ consensus_8314#0 T-TTGTGGCAAGC-------AAATGATTGCAGG--ATTCAAGAGAGTCAGCAACATCTTG 332 consensus_8314#1 GAATGGAATTAGGAAAAGATTTTCTAATAAAATGGAAAAGTTCATCAATGAATCTAAGGG 392 consensus_8314#2 ------------------------------------------------------------ consensus_8314#0 CAACAGGATTTGGAGATG-TGCAGTGCAGCGGTGCCCCAATACTACCACAGCTATCATGA 391 consensus_8314#1 GTTCCAGGCTAACATGCTTGGAGATTTGAACAAGGATTTAGTTCTTTTACTTAAGGAGAA 452 consensus_8314#2 ------------------------------------------------------------ consensus_8314#0 AAGAGATGAGAGCATATCTGAAGAAGAATTCGAGAATT-GGCAAATATCTCAACTTACAC 450 consensus_8314#1 AGGTTCGCTAGGGGATGAGAGTGAGAACTTGAAAATGAAGATCAACGCAATAGAAAGTTC 512 consensus_8314#2 ----------------------GAGAACTTGAAAATGAAGATCA-CGCAATAGAAAGTTC 37 consensus_8314#0 CCCTCCTCTTATCGGCCAATGCCAAGTTCTGAGACAGCTGCCAAAAGGAAACAAGCTCCT 510 * *** * * * * * ** * consensus_8314#1 GTCACGTGATTACTTTGCTGACATTCTTGAGGAGCTAAATATGGAAAATTCAGTTTTGGA 572 consensus_8314#2 GTCACGTGGTTACTTTGCTGACATTCTTGAGGAGCTAAATATGGAAAATTCAGTTTTGGA 97 consensus_8314#0 GACGCTCTTCAATTTGGACGACCAACCCCAA-AACAAACAACATCTGTTGCTTCTATGCT 569 * * * * ** * *** * * * * ** * * * * ** consensus_8314#1 ATCTGAATTACAGTATAAGATTTCAGAATACATGGATGTTATGAAGGATAT--AAGCAAT 630 consensus_8314#2 ATCTGAATTACAGTATAAGATTTCAGAATACATGGATGTTATGAAGGATAT--AAGCAAT 155 consensus_8314#0 TTGCAAGGCACCTGAAGAGGTTGACGAAGATATCCATGCCAAGGGGCCTTCTCAATCTAC 629 * * ** * ** ** *** * ** *** * * * * ** * * consensus_8314#1 CTGAAGGCTCTATTTAGTTCGATCAATTCTTAGTAACAATATTCATCGGTGGAGGTA--- 687 consensus_8314#2 CTGAAGGCTCTATTTAGTTCGATCAATTCTTAGTAACAATATTCATCGGTGGAGGTAACT 215 consensus_8314#0 CATTGAGCAATGTACAAGGCAGTACAATGGAAAACAAATGGTCCATCAGC--AAATAGCA 687 * ** * * * * * * * * * * * **** * * ** consensus_8314#1 ------------------------------------------------------------ consensus_8314#2 GGATATTTAATTAGGCTCGACACGGTTGTCTGTGATAAAAAATACGAAGTTTTTTCTGAT 275 consensus_8314#0 AATTTGTTTTCTGAATTTGACATACCATTTGCTGCTGCGCACTCAAGGAGCTTTG----- 742 consensus_8314#1 ----------------------------TCCTACCTAATCACGAAGTATAT-GTAG--AG 716 consensus_8314#2 TGGCTGTTTTTGTTCTCCTGCGTAGGTATCCTACCTAATCACGAAGTATAT-GTAG--AG 332 consensus_8314#0 -AGACTATGGTTCAATCCATCATACAATTTGGACCTGGTTATAAGCCTCCTAGTCATCAG 801 * **** * * * * ** ** consensus_8314#1 GCATAGCATGTAGCATT-CTGGCTGGAGTAAGAATTCCCAATTTTGTTTTAGAGCATTCC 775 consensus_8314#2 GCATAGCATGTAGCATT-CTGGCTGGAGTAAGAATTCCCAATTTTGTTTTAGAGCATTCC 391 consensus_8314#0 GATTGGTGGGTTCCGTTGCTTGTTGGGGCAAAGGA----GACTACGTTGGGAGCCAGTGG 857 * * * ** * ** ** * *** * ** * * *** ** * consensus_8314#1 TGATTTTTCTCCGTTCAAGGAATCATTATCTTGTATAGAGCAGAGTGCGAATAAAATCAA 835 consensus_8314#2 TGATTTTTCTCCGTTCAAGGAATCATTATCTTGTATAGAGCAGAGTGCGAATAAAATCAA 451 consensus_8314#0 TAATATGGGAGATTTGAATGAATCGGACGATGATATTTGGTAGT-TAAGACCAGAATCAT 916 * ** * ** ** ***** * *** * ** * ** * ***** consensus_8314#1 --ATTGGTTTTGCTTTACAAATTGGCCCTTGCACCTATCAAATCAAATTGGTTTGGCTTT 893 consensus_8314#2 --ATTGGTTTTGCTTTACAAATTGGCCCTTGCACCTATCAAATCAAATTGGTTTGGCTTT 509 consensus_8314#0 TTACCTATGATGTCATGCTAGTATACTATTATGCTGTTTA--TCTGTCTCGGAGAACGCT 974 * * ** * * * * * ** * * * ** * * * * consensus_8314#1 ACTGGGCCACCTCTTGTGTATTTTCT-TAGATCACCCGTGGCAATGAAATG--------- 943 consensus_8314#2 ACTGGGCCACCTCTTGTATATTTTCT-TAGATCACCCGTGGCAATGAAATGAAGATCGTC 568 consensus_8314#0 GATGC-TTATGACCTATGTACTTTTGGTGGATGATTTTTGCTATATTTAT---------- 1023 ** * * * * ** *** * *** * ** * ** consensus_8314#1 ---------------------------------------------------- consensus_8314#2 CACATTGCATCAAGGTGAATCATCGTAAAAAAAAAAAAAAAAAGAAGACCAA 620 consensus_8314#0 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||