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Oryza sativa
cluster # 8316 cluster # 8316       Sequences # 5       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8316#0 length = 1571 sequences # 2  
consensus_8316#1 length = 1471 sequences # 1  
consensus_8316#2 length = 674 sequences # 1  
consensus_8316#3 length = 648 sequences # 1  

consensusID : consensus_8316#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1571
fasta sequence
                              [GAAAACCACAAGAGACCNTAAAAAACTTCCTCTGATAGAGAGGAGACAGAGAGAGAGGAGGAGCTTTATTTCGAATGCTCCTGACTCCTCCTCGGNTCCTCTTCCTCTCGAGCCCTTCACTGCNGTAGCATCATTCAAGCTGGACCC------TCCCAGATCAAATCAAACCCGNTGGGNTGGCCTTCCGTTTTGAGGGATTCTATATCTATAGGCTTGTCCATGGCATCAGTTACTTATCTTGATGATGCCCATTCTGAAGTTATCGATCCTCCAAAGAACGAGGAGATGCTGGATGTTACTGAACTTGTTGATGATCACACCCAGCATTCACCAAAACCGAATGCGATGGTCTCTGGCAATGTGCGTGAGCTACTGGAATGCCCTGTGTGTCTAAATGCCATGTATCCTCCAATTCATCAGTGCTCCAATGGNCATACTCTATGTTCCGGATGCAAGCCCAGGGGTCACAACCGGTGCCCAACTTGCAGACATGAATTGGGTAACATAAGATGCCTTGCTCTGGGAAAAGNAGCTGCATCACTAGAGCTTNCATGCAAATATCAAAACTTTTGGGNGCTTGGGCATATATCTTTATTACTGNAAGCTGAAGCATGAGTCACAGNGGCCATACAGGCCCTATACTTGNCCATATGCTGGATCTGAATGCACTGGTGCTGGGGACATTTAAGATCTAANAAGGCACTTGNAANATGATCATAAGGGNGACATGCNCAACGGAAGNNCCTT-AATAACCGTTATGTCAAATCAAATCCTCATGAAGTTGAGAATGCTACCTGGATGCTCACGGTTTTCAGCTGTTTCGGCCAGTACTTTTGCCTGCACTTTGAGGCATTCCAGTTGGGCATGGCACCTGTCTACATCGCCTTCCTACGGTTCATGGGAGATGATGCAGAAGCCAAGAACTATAGCTACAGCCTGGAGGTCGGAGGCAGTGGTCGGAAGATGACCTGGCAAGGCGTCCCCCGAAGCATCAGAGACAGTCACAGGAAAGTTCGGGACAGCTACGACGGCCTTATCATCCAGCGGAACATGGCCTTGTTCTTCTCCGGTGGCGACAAGAAGGAGCTCAAACTGCGTGTCACCGGAAGGATTTGGAAGGAGCAGTGAATCACAACATCTCTAACTTCTCGTTGCGACTGTTAGTTTGATTGCGACATGGATCTTGATTCTTGAATTTCCAGGGTGAAATGGGATTAATGCGTAAGCGAATTGCTCCGGGAACTAGCTAGGCAGGACCCTGTAAGATTGTAGACTGTCTTAGCTACCAGCTGCCATTCTTCTTCTAGTGGTTCAGGAACATTTTGTATGGATGATTGTCTCGTGGCACTGATGTAGTAGAATTGAAGGCAAATCTCTTCTTTGCTCTTAACTTCTCCAAGAATTAGCCAATCTGGCGAATCTTCTGATGGTGACTCTGCCAAATGTAAATGATGTAGCTCTCCCCTTTGTATGATTCAAATCTATGTCAGGCCACCATTGTTTTGCCGGAAATGTACCCCTGCCAAACCTGCATTTGCTCCTACTACTACATGTTCAGCTGTAAATTTGAACAC]

[+] EMBL CA765332             [GAAAACCACAAGAGACCNTAAAAAACTTCCTCTGATAGAGAGGAGACAGAGAGAGAGGAGGAGCTTTATTTCGAATGCTCCTGACTCCTCCTCGGNTCCTCTTCCTCTCGAGCCCTTCACTGCNGTAGCATCATTCAAGCTGGACCC      TCCCAGATCAAATCAAACCCGNTGGGNTGGCCTTCCGTTTTGAGGGATTCTATATCTATAGGCTTGTCCATGGCATCAGTTACTTATCTTGATGATGCCCATTCTGAAGTTATCGATCCTCCAAAGAACGAGGAGATGCTGGATGTTACTGAACTTGTTGATGATCACACCCAGCATTCACCAAAACCGAATGCGATGGTCTCTGGCAATGTGCGTGAGCTACTGGAATGCCCTGTGTGTCTAAATGCCATGTATCCTCCAATTCATCAGTGCTCCAATGGNCATACTCTATGTTCCGGATGCAAGCCCAGGGGTCACAACCGGTGCCCAACTTGCAGACATGAATTGGGTAACATAAGATGCCTTGCTCTGGGAAAAGNAGCTGCATCACTAGAGCTTNCATGCAAATATCAAAACTTTTGGGNGCTTGGGCATATATCTTTATTACTGNAAGCTGAAGCATGAGTCACAGNGGCCATACAGGCCCTATACTTGNCCATATGCTGGATCTGAATGCACTGGTGCTGGGGACATTTAAGATCTAANAAGGCACTTGNAANATGATCATAAGGGNGACATGCNCAACGGAAGNNCCTT AATAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AK107155             [                                                                           TGCTCCTGACTCCTCCTCGGTTCCTCTTCCTCTCGAGCCCTTCACTGCAGTAGCATCATTCAAGCTGGACCCAAAGCATCCCAGATCAAATCAAACCCGCTGGTTTGGCCTTCCGTTTTGAGGGATTCTATATCTATAGGCTTGTCCATGGCATCAGTTACTTATCTTGATGATGCCCATTCTGAAGTTATCGATCCTCCAAAGAACGAGGAGATGCTGGATGTTACTGAACTTGTTGATGATCACACCCAGCATTCACCAAAACCGAATGCGATGGTCTCTGGCAATGTGCGTGAGCTACTGGAATGCCCTGTGTGTCTAAATGCCATGTATCCTCCAATTCATCAGTGCTCCAATGGTCATACTCTATGTTCCGGATGCAAGCCCAGGGTTCACAACCGCTGCCCAACTTGCAGACATGAATTGGGTAACATAAGATGCCTTGCTCTGGAAAAGGTAGCTGCATCACTAGAGCTTCCATGCAAATATCAGAAC TTTGGGTGCTTGGGCATATATCCTTATTACTGCAAGCTGAAGCATGAGTCACAGTGCCAATACAGGCCCTATACTTGCCCATATGCTGGATCTGAATGCACTGTTGCTGGTGACATTCAGTATCTAGTAAGTCACTTGAAAGATGATCATAAGGTTGACATGCACAACGGAAGCACCTTCAATCACCGTTATGTCAAATCAAATCCTCATGAAGTTGAGAATGCTACCTGGATGCTCACGGTTTTCAGCTGTTTCGGCCAGTACTTTTGCCTGCACTTTGAGGCATTCCAGTTGGGCATGGCACCTGTCTACATCGCCTTCCTACGGTTCATGGGAGATGATGCAGAAGCCAAGAACTATAGCTACAGCCTGGAGGTCGGAGGCAGTGGTCGGAAGATGACCTGGCAAGGCGTCCCCCGAAGCATCAGAGACAGTCACAGGAAAGTTCGGGACAGCTACGACGGCCTTATCATCCAGCGGAACATGGCCTTGTTCTTCTCCGGTGGCGACAAGAAGGAGCTCAAACTGCGTGTCACCGGAAGGATTTGGAAGGAGCAGTGAATCACAACATCTCTAACTTCTCGTTGCGACTGTTAGTTTGATTGCGACATGGATCTTGATTCTTGAATTTCCAGGGTGAAATGGGATTAATGCGTAAGCGAATTGCTCCGGGAACTAGCTAGGCAGGACCCTGTAAGATTGTAGACTGTCTTAGCTACCAGCTGCCATTCTTCTTCTAGTGGTTCAGGAACATTTTGTATGGATGATTGTCTCGTGGCACTGATGTAGTAGAATTGAAGGCAAATCTCTTCTTTGCTCTTAACTTCTCCAAGAATTAGCCAATCTGGCGAATCTTCTGATGGTGACTCTGCCAAATGTAAATGATGTAGCTCTCCCCTTTGTATGATTCAAATCTATGTCAGGCCACCATTGTTTTGCCGGAAATGTACCCCTGCCAAACCTGCATTTGCTCCTACTACTACATGTTCAGCTGTAAATTTGAACAC]


>consensus_8316#0 GAAAACCACAAGAGACCNTAAAAAACTTCCTCTGATAGAGAGGAGACAGAGAGAGAGGAG GAGCTTTATTTCGAATGCTCCTGACTCCTCCTCGGNTCCTCTTCCTCTCGAGCCCTTCAC TGCNGTAGCATCATTCAAGCTGGACCCTCCCAGATCAAATCAAACCCGNTGGGNTGGCCT TCCGTTTTGAGGGATTCTATATCTATAGGCTTGTCCATGGCATCAGTTACTTATCTTGAT GATGCCCATTCTGAAGTTATCGATCCTCCAAAGAACGAGGAGATGCTGGATGTTACTGAA CTTGTTGATGATCACACCCAGCATTCACCAAAACCGAATGCGATGGTCTCTGGCAATGTG CGTGAGCTACTGGAATGCCCTGTGTGTCTAAATGCCATGTATCCTCCAATTCATCAGTGC TCCAATGGNCATACTCTATGTTCCGGATGCAAGCCCAGGGGTCACAACCGGTGCCCAACT TGCAGACATGAATTGGGTAACATAAGATGCCTTGCTCTGGGAAAAGNAGCTGCATCACTA GAGCTTNCATGCAAATATCAAAACTTTTGGGNGCTTGGGCATATATCTTTATTACTGNAA GCTGAAGCATGAGTCACAGNGGCCATACAGGCCCTATACTTGNCCATATGCTGGATCTGA ATGCACTGGTGCTGGGGACATTTAAGATCTAANAAGGCACTTGNAANATGATCATAAGGG NGACATGCNCAACGGAAGNNCCTTAATAACCGTTATGTCAAATCAAATCCTCATGAAGTT GAGAATGCTACCTGGATGCTCACGGTTTTCAGCTGTTTCGGCCAGTACTTTTGCCTGCAC TTTGAGGCATTCCAGTTGGGCATGGCACCTGTCTACATCGCCTTCCTACGGTTCATGGGA GATGATGCAGAAGCCAAGAACTATAGCTACAGCCTGGAGGTCGGAGGCAGTGGTCGGAAG ATGACCTGGCAAGGCGTCCCCCGAAGCATCAGAGACAGTCACAGGAAAGTTCGGGACAGC TACGACGGCCTTATCATCCAGCGGAACATGGCCTTGTTCTTCTCCGGTGGCGACAAGAAG GAGCTCAAACTGCGTGTCACCGGAAGGATTTGGAAGGAGCAGTGAATCACAACATCTCTA ACTTCTCGTTGCGACTGTTAGTTTGATTGCGACATGGATCTTGATTCTTGAATTTCCAGG GTGAAATGGGATTAATGCGTAAGCGAATTGCTCCGGGAACTAGCTAGGCAGGACCCTGTA AGATTGTAGACTGTCTTAGCTACCAGCTGCCATTCTTCTTCTAGTGGTTCAGGAACATTT TGTATGGATGATTGTCTCGTGGCACTGATGTAGTAGAATTGAAGGCAAATCTCTTCTTTG CTCTTAACTTCTCCAAGAATTAGCCAATCTGGCGAATCTTCTGATGGTGACTCTGCCAAA TGTAAATGATGTAGCTCTCCCCTTTGTATGATTCAAATCTATGTCAGGCCACCATTGTTT TGCCGGAAATGTACCCCTGCCAAACCTGCATTTGCTCCTACTACTACATGTTCAGCTGTA AATTTGAACAC



consensusID : consensus_8316#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1471
fasta sequence
                              [GAGAAGAGAGAGAGAGAGGCTTTTAATTCGAATTCTCTCTCTCATCACGGCTTCTTCTGCTTCTCCTTCTCCTCCCCCCTCATCCCTCCTCCGCCGGTAGCCGCCGGCCGGAAGCGAGCAGCGAGCGAGACCGGAGCCCGCCGGAGCCGGTCTCGCTCCCCCCTCCTCCCTTGTTCGCGCCGCCCCCGAGGACCCCTTACAATATCTAGTGTATTTATGGCCTCAGTTACTTATATTGATGACTCCGGTTCTGAGGTAATTGATCCTCCAAAGACTGAGGTGCTGGATGTTACCGAACTTGCTGGTGATCCTGTTCCGCATTCACCAAAACCAAATGTGGTAGTTTCTAGCAGTGTGCGTGAACTGCTTGAATGTCCAGTCTGCCTGAGCGCAATGTATCCTCCCATTCATCAGTGCTCTAATGGTCATACATTGTGCTCTGGATGCAAACCAAGGGTTCACAATCGCTGTCCAACTTGTAGGCATGAACTGGGTAATATTAGATGTCTTGCTCTCGAGAAGGTGGCTGCGTCGCTTGAACTTCCATGCAAGTACCAGAACTTCGGGTGTGTAGGCATTTATCCTTACTACTGCAAGCTGAAGCATGAGTCACAGTGCCAATATAGGCCTTATAGCTGTCCATATGCTGGATCTGAATGCACAGTTGCTGGTGACATTCCATACTTGGTGAATCACTTGAAAGATGACCACAAGGTTGACATGCATAATGGCTGCACCTTCAACCATCGCTATGTCAAGTCGAATCCTCATGAAGTTGAGAATGCCACCTGGATGCTTACGGTTTTCAGCTGCTTTGGCCAGTACTTCTGCCTACATTTCGAAGCATTTCAGCTGGGGATGGCACCTGTGTACATCGCCTTCCTGAGGTTCATGGGTGATGACTTGGAAGCAAAGAACTACAGCTACAGCCTGGAGGTAGGAGGCACTGGCCGCAAAATGATCTGGCAAGGGGTTCCCCGGAGCATCAGAGACAGCCATCGGAAGGTCCGGGATAGCTATGATGGGCTTATCATCCAACGGAACATGGCCTTGTTCTTCTCTGGTGGAGAAAGGAAGGAGCTCAAATTGCGGGTCACTGGGAGAATTTGGAAGGAACAGTGAAAATAAAATGTGAAATGATCTGTTCATCGTTCTTAACCCTTGCATGAACCTATGTATCATCACAGTGCGAGAATTATAGCCATTCATAGGCAGTGACTCTAAAATGAAGACTTGTAATGTTATTAGCTTGTTTTAGCTACCATCTTCTGTTAGATTGGTGCCTGTGGATGACTAGATGACAGTCATGTAGACCAGAGTGGCACTATTGTAGAATTCCTGGCAAACTTCTCTTTGCCTTGAACTGCTTGTTGAGTTGCCATTCTGTGGTATAGGGAAATCTAATGGCAATTCATGAGATGAATGTGTTGAACTCTTTTTCATGTTTCCAGCATATTTCTAGCTTCTTTGT]

[+] EMBL AK058336             [GAGAAGAGAGAGAGAGAGGCTTTTAATTCGAATTCTCTCTCTCATCACGGCTTCTTCTGCTTCTCCTTCTCCTCCCCCCTCATCCCTCCTCCGCCGGTAGCCGCCGGCCGGAAGCGAGCAGCGAGCGAGACCGGAGCCCGCCGGAGCCGGTCTCGCTCCCCCCTCCTCCCTTGTTCGCGCCGCCCCCGAGGACCCCTTACAATATCTAGTGTATTTATGGCCTCAGTTACTTATATTGATGACTCCGGTTCTGAGGTAATTGATCCTCCAAAGACTGAGGTGCTGGATGTTACCGAACTTGCTGGTGATCCTGTTCCGCATTCACCAAAACCAAATGTGGTAGTTTCTAGCAGTGTGCGTGAACTGCTTGAATGTCCAGTCTGCCTGAGCGCAATGTATCCTCCCATTCATCAGTGCTCTAATGGTCATACATTGTGCTCTGGATGCAAACCAAGGGTTCACAATCGCTGTCCAACTTGTAGGCATGAACTGGGTAATATTAGATGTCTTGCTCTCGAGAAGGTGGCTGCGTCGCTTGAACTTCCATGCAAGTACCAGAACTTCGGGTGTGTAGGCATTTATCCTTACTACTGCAAGCTGAAGCATGAGTCACAGTGCCAATATAGGCCTTATAGCTGTCCATATGCTGGATCTGAATGCACAGTTGCTGGTGACATTCCATACTTGGTGAATCACTTGAAAGATGACCACAAGGTTGACATGCATAATGGCTGCACCTTCAACCATCGCTATGTCAAGTCGAATCCTCATGAAGTTGAGAATGCCACCTGGATGCTTACGGTTTTCAGCTGCTTTGGCCAGTACTTCTGCCTACATTTCGAAGCATTTCAGCTGGGGATGGCACCTGTGTACATCGCCTTCCTGAGGTTCATGGGTGATGACTTGGAAGCAAAGAACTACAGCTACAGCCTGGAGGTAGGAGGCACTGGCCGCAAAATGATCTGGCAAGGGGTTCCCCGGAGCATCAGAGACAGCCATCGGAAGGTCCGGGATAGCTATGATGGGCTTATCATCCAACGGAACATGGCCTTGTTCTTCTCTGGTGGAGAAAGGAAGGAGCTCAAATTGCGGGTCACTGGGAGAATTTGGAAGGAACAGTGAAAATAAAATGTGAAATGATCTGTTCATCGTTCTTAACCCTTGCATGAACCTATGTATCATCACAGTGCGAGAATTATAGCCATTCATAGGCAGTGACTCTAAAATGAAGACTTGTAATGTTATTAGCTTGTTTTAGCTACCATCTTCTGTTAGATTGGTGCCTGTGGATGACTAGATGACAGTCATGTAGACCAGAGTGGCACTATTGTAGAATTCCTGGCAAACTTCTCTTTGCCTTGAACTGCTTGTTGAGTTGCCATTCTGTGGTATAGGGAAATCTAATGGCAATTCATGAGATGAATGTGTTGAACTCTTTTTCATGTTTCCAGCATATTTCTAGCTTCTTTGT]


>consensus_8316#1 GAGAAGAGAGAGAGAGAGGCTTTTAATTCGAATTCTCTCTCTCATCACGGCTTCTTCTGC TTCTCCTTCTCCTCCCCCCTCATCCCTCCTCCGCCGGTAGCCGCCGGCCGGAAGCGAGCA GCGAGCGAGACCGGAGCCCGCCGGAGCCGGTCTCGCTCCCCCCTCCTCCCTTGTTCGCGC CGCCCCCGAGGACCCCTTACAATATCTAGTGTATTTATGGCCTCAGTTACTTATATTGAT GACTCCGGTTCTGAGGTAATTGATCCTCCAAAGACTGAGGTGCTGGATGTTACCGAACTT GCTGGTGATCCTGTTCCGCATTCACCAAAACCAAATGTGGTAGTTTCTAGCAGTGTGCGT GAACTGCTTGAATGTCCAGTCTGCCTGAGCGCAATGTATCCTCCCATTCATCAGTGCTCT AATGGTCATACATTGTGCTCTGGATGCAAACCAAGGGTTCACAATCGCTGTCCAACTTGT AGGCATGAACTGGGTAATATTAGATGTCTTGCTCTCGAGAAGGTGGCTGCGTCGCTTGAA CTTCCATGCAAGTACCAGAACTTCGGGTGTGTAGGCATTTATCCTTACTACTGCAAGCTG AAGCATGAGTCACAGTGCCAATATAGGCCTTATAGCTGTCCATATGCTGGATCTGAATGC ACAGTTGCTGGTGACATTCCATACTTGGTGAATCACTTGAAAGATGACCACAAGGTTGAC ATGCATAATGGCTGCACCTTCAACCATCGCTATGTCAAGTCGAATCCTCATGAAGTTGAG AATGCCACCTGGATGCTTACGGTTTTCAGCTGCTTTGGCCAGTACTTCTGCCTACATTTC GAAGCATTTCAGCTGGGGATGGCACCTGTGTACATCGCCTTCCTGAGGTTCATGGGTGAT GACTTGGAAGCAAAGAACTACAGCTACAGCCTGGAGGTAGGAGGCACTGGCCGCAAAATG ATCTGGCAAGGGGTTCCCCGGAGCATCAGAGACAGCCATCGGAAGGTCCGGGATAGCTAT GATGGGCTTATCATCCAACGGAACATGGCCTTGTTCTTCTCTGGTGGAGAAAGGAAGGAG CTCAAATTGCGGGTCACTGGGAGAATTTGGAAGGAACAGTGAAAATAAAATGTGAAATGA TCTGTTCATCGTTCTTAACCCTTGCATGAACCTATGTATCATCACAGTGCGAGAATTATA GCCATTCATAGGCAGTGACTCTAAAATGAAGACTTGTAATGTTATTAGCTTGTTTTAGCT ACCATCTTCTGTTAGATTGGTGCCTGTGGATGACTAGATGACAGTCATGTAGACCAGAGT GGCACTATTGTAGAATTCCTGGCAAACTTCTCTTTGCCTTGAACTGCTTGTTGAGTTGCC ATTCTGTGGTATAGGGAAATCTAATGGCAATTCATGAGATGAATGTGTTGAACTCTTTTT CATGTTTCCAGCATATTTCTAGCTTCTTTGT



consensusID : consensus_8316#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 674
fasta sequence
                              [TAATGGTCATACATTGTGCTCCGGATGCAAACCAAGGGTTCACAATCGCCGTCCAACTCGTAGGCATGAACTGGGTAATATCAGATGTCTTGCTCTCGAGAAGGTGCCTGCGTCGCTTGAACTTCCATGCAAGTACCAGAACTTCGGGTGTGTAGGCATTTATCCTTACTACTGCAGCTGAAGCATGAGTCACAGTGCCAATATAGGCCTTATAGCTGTCCATATGCTGGATCTGAATGCACAGTTGCTGGTGACATTCCATACTTGGTGAATCACTTGAAAGATGACCACAAGGTTGACATGCATAATGGCTGCACCTTCAACCATCGCTATGTCAAGTCGAATCCTCATGAAGTTGAGAATGCCACCTGGATGCTTACGGTATCCCCTCGTTAACTCCACCATGTTAGTTATTGTGAAGTATATCACTGATGTTTACTTATGCAAAGATTGGTTCACTTGTCTGCTAAGATAGTCCATATTTCTGTACTGAGTTTTATGAGCCTTTCTGTAAAAATAAACATTGGTTCACTTGTACAGTATGATTGCACTCTGTACTTTTCATGTCAACTGAGGATGCTGATCATGCAGCATAGTTATTGGTCTAAAATAATCTCTCACCTATGAAGAAACTATGCATCAGAATATCCATCTGCTTCCATTTCCAAAAAAAA]

[-] EMBL CA759515             [TAATGGTCATACATTGTGCTCCGGATGCAAACCAAGGGTTCACAATCGCCGTCCAACTCGTAGGCATGAACTGGGTAATATCAGATGTCTTGCTCTCGAGAAGGTGCCTGCGTCGCTTGAACTTCCATGCAAGTACCAGAACTTCGGGTGTGTAGGCATTTATCCTTACTACTGCAGCTGAAGCATGAGTCACAGTGCCAATATAGGCCTTATAGCTGTCCATATGCTGGATCTGAATGCACAGTTGCTGGTGACATTCCATACTTGGTGAATCACTTGAAAGATGACCACAAGGTTGACATGCATAATGGCTGCACCTTCAACCATCGCTATGTCAAGTCGAATCCTCATGAAGTTGAGAATGCCACCTGGATGCTTACGGTATCCCCTCGTTAACTCCACCATGTTAGTTATTGTGAAGTATATCACTGATGTTTACTTATGCAAAGATTGGTTCACTTGTCTGCTAAGATAGTCCATATTTCTGTACTGAGTTTTATGAGCCTTTCTGTAAAAATAAACATTGGTTCACTTGTACAGTATGATTGCACTCTGTACTTTTCATGTCAACTGAGGATGCTGATCATGCAGCATAGTTATTGGTCTAAAATAATCTCTCACCTATGAAGAAACTATGCATCAGAATATCCATCTGCTTCCATTTCCAAAAAAAA]


>consensus_8316#2 TAATGGTCATACATTGTGCTCCGGATGCAAACCAAGGGTTCACAATCGCCGTCCAACTCG TAGGCATGAACTGGGTAATATCAGATGTCTTGCTCTCGAGAAGGTGCCTGCGTCGCTTGA ACTTCCATGCAAGTACCAGAACTTCGGGTGTGTAGGCATTTATCCTTACTACTGCAGCTG AAGCATGAGTCACAGTGCCAATATAGGCCTTATAGCTGTCCATATGCTGGATCTGAATGC ACAGTTGCTGGTGACATTCCATACTTGGTGAATCACTTGAAAGATGACCACAAGGTTGAC ATGCATAATGGCTGCACCTTCAACCATCGCTATGTCAAGTCGAATCCTCATGAAGTTGAG AATGCCACCTGGATGCTTACGGTATCCCCTCGTTAACTCCACCATGTTAGTTATTGTGAA GTATATCACTGATGTTTACTTATGCAAAGATTGGTTCACTTGTCTGCTAAGATAGTCCAT ATTTCTGTACTGAGTTTTATGAGCCTTTCTGTAAAAATAAACATTGGTTCACTTGTACAG TATGATTGCACTCTGTACTTTTCATGTCAACTGAGGATGCTGATCATGCAGCATAGTTAT TGGTCTAAAATAATCTCTCACCTATGAAGAAACTATGCATCAGAATATCCATCTGCTTCC ATTTCCAAAAAAAA



consensusID : consensus_8316#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 648
fasta sequence
                              [CTGTGTACATCCCCTTCCTGAGGTTCATGGGGGATGACTTGGAAGCAAAGAACTACAGCTCCACCCTGGAGGTAGGAGGCCCTGGCCGCAAAATGATTTGGCAAGGGGTTCCCCGGAGCATCAGAGACACCCATTGGAAGGTCCGGGATAGCTATGATGGGGTTATCATCCAACGGAACATGGCCTTGTTTTTTTTTGGGGGAGAAAGGAAGGAGCTCAAATTGGGGGTCCCTGGGGGAATTTGGAAGGACCAGTGAAAATAAAATGGGAAAGGATTTGTTCATCGTTTTTAACCCTTGCATGAACCTATGTTTCATCCCAGTGGGGGAATTTTAGCCATTCATAGGCAGGGACTTTAAAAAGAAGACTTGTAATGTTATTAGCTTGTTTTAGCTCCCATTTTTTGTTAGATTGGGGCCTGTGGATGACTAGATGCCAGTCATGTAGACCAGAGGGGCCCTATTGTAGAATTCTTGGCAAAATTTTTTTTCCCTTGAACTGCTTGTTGAGTTGCCATTTTGGGGTATAGGGAAATTTAATGGCAATTCATGAGAGGAATGGGTTGAACTTTTTTTCATGTTTCCAGCATATTTTTAGCTTTTTAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATATAAAGA]

[-] EMBL CB653854             [CTGTGTACATCCCCTTCCTGAGGTTCATGGGGGATGACTTGGAAGCAAAGAACTACAGCTCCACCCTGGAGGTAGGAGGCCCTGGCCGCAAAATGATTTGGCAAGGGGTTCCCCGGAGCATCAGAGACACCCATTGGAAGGTCCGGGATAGCTATGATGGGGTTATCATCCAACGGAACATGGCCTTGTTTTTTTTTGGGGGAGAAAGGAAGGAGCTCAAATTGGGGGTCCCTGGGGGAATTTGGAAGGACCAGTGAAAATAAAATGGGAAAGGATTTGTTCATCGTTTTTAACCCTTGCATGAACCTATGTTTCATCCCAGTGGGGGAATTTTAGCCATTCATAGGCAGGGACTTTAAAAAGAAGACTTGTAATGTTATTAGCTTGTTTTAGCTCCCATTTTTTGTTAGATTGGGGCCTGTGGATGACTAGATGCCAGTCATGTAGACCAGAGGGGCCCTATTGTAGAATTCTTGGCAAAATTTTTTTTCCCTTGAACTGCTTGTTGAGTTGCCATTTTGGGGTATAGGGAAATTTAATGGCAATTCATGAGAGGAATGGGTTGAACTTTTTTTCATGTTTCCAGCATATTTTTAGCTTTTTAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATATAAAGA]


>consensus_8316#3 CTGTGTACATCCCCTTCCTGAGGTTCATGGGGGATGACTTGGAAGCAAAGAACTACAGCT CCACCCTGGAGGTAGGAGGCCCTGGCCGCAAAATGATTTGGCAAGGGGTTCCCCGGAGCA TCAGAGACACCCATTGGAAGGTCCGGGATAGCTATGATGGGGTTATCATCCAACGGAACA TGGCCTTGTTTTTTTTTGGGGGAGAAAGGAAGGAGCTCAAATTGGGGGTCCCTGGGGGAA TTTGGAAGGACCAGTGAAAATAAAATGGGAAAGGATTTGTTCATCGTTTTTAACCCTTGC ATGAACCTATGTTTCATCCCAGTGGGGGAATTTTAGCCATTCATAGGCAGGGACTTTAAA AAGAAGACTTGTAATGTTATTAGCTTGTTTTAGCTCCCATTTTTTGTTAGATTGGGGCCT GTGGATGACTAGATGCCAGTCATGTAGACCAGAGGGGCCCTATTGTAGAATTCTTGGCAA AATTTTTTTTCCCTTGAACTGCTTGTTGAGTTGCCATTTTGGGGTATAGGGAAATTTAAT GGCAATTCATGAGAGGAATGGGTTGAACTTTTTTTCATGTTTCCAGCATATTTTTAGCTT TTTAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATATAAAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8316#1      ---GAGAAGAGAGAGAGAGAGGCTTTTAATTCGAATTCTCTCTCTCATCACGGCTTCTTC 57
consensus_8316#3      ------------------------------------------------------------
consensus_8316#0      GAAAACCACAAGAGACCNTAAAAAACTTCCTCTGATAGAGAGGAGACAGAGAGAGAGGAG 60
consensus_8316#2      ------------------------------------------------------------
                                                                                  

consensus_8316#1      TGCTTCTCCTTCTCCTCCCCCCTCATCCCTCCTCCGCCGGTAGCCGCCGGCCGGAAGCGA 117
consensus_8316#3      ------------------------------------------------------------
consensus_8316#0      GAGCTTTATTTCGAATGCTCCTGACTCCTCCTCGGNTCCTCTTCCTCTCGAGCCCTTCAC 120
consensus_8316#2      ------------------------------------------------------------
                                                                                  

consensus_8316#1      GCAGCGAGCGAGACCGGAGCCCGCCGGAGCCGGTCTCGCTCCCCCCTCCTCCCTTGTTCG 177
consensus_8316#3      ------------------------------------------------------------
consensus_8316#0      TGCNGTAGCATCATTCAAGCTGGACCCTCCCAGATCAAATCAAACCCGNTGGGNTGGCCT 180
consensus_8316#2      ------------------------------------------------------------
                                                                                  

consensus_8316#1      CGCCGCCCCCGAGGACCCCTTACAATATCTAGTGTATTTATGGCCTCAGTTACTTATATT 237
consensus_8316#3      ------------------------------------------------------------
consensus_8316#0      TCCGTTTTGAGGGATTCTATATCTATAGGCTTGTCCATGGCATCAGTTACTTATCTTGAT 240
consensus_8316#2      ------------------------------------------------------------
                                                                                  

consensus_8316#1      GATGACTCCGGTTCTGAGGTAATTGATCCTCCAAAGACTGAGGTGCTGGATGTTACCGAA 297
consensus_8316#3      ------------------------------------------------------------
consensus_8316#0      GATGCCCATTCTGAAGTTATCGATCCTCCAAAGAACGAGGAGATGCTGGATGTTACTGAA 300
consensus_8316#2      ------------------------------------------------------------
                                                                                  

consensus_8316#1      CTTGCTGGTGATCCTGTTCCGCATTCACCAAAACCAAATGTGGTAGTTTCTAGCAGTGTG 357
consensus_8316#3      ------------------------------------------------------------
consensus_8316#0      CTTGTTGATGATCACACCCAGCATTCACCAAAACCGAATGCGATGGTCTCTGGCAATGTG 360
consensus_8316#2      ------------------------------------------------------------
                                                                                  

consensus_8316#1      CGTGAACTGCTTGAATGTCCAGTCTGCCTGAGCGCAATGTATCCTCCCATTCATCAGTGC 417
consensus_8316#3      ------------------------------------------------------------
consensus_8316#0      CGTGAGCTACTGGAATGCCCTGTGTGTCTAAATGCCATGTATCCTCCAATTCATCAGTGC 420
consensus_8316#2      ------------------------------------------------------------
                                                                                  

consensus_8316#1      TCTAATGGTCATACATTGTGCTCTGGATGCAAACCAAGGGTTCACAATCGCTGTCCAACT 477
consensus_8316#3      ------------------------------------------------------------
consensus_8316#0      TCCAATGGNCATACTCTATGTTCCGGATGCAAGCCCAGGGGTCACAACCGGTGCCCAACT 480
consensus_8316#2      ------------------------------------------------------------
                                                                                  

consensus_8316#1      TGTAGGCATGAACTGGGTAATATTAGATGTCTTGCTCTCGAGAAGGTGGCTGCGTCGCTT 537
consensus_8316#3      ------------------------------------------------------------
consensus_8316#0      TGCAGACATGAATTGGGTAACATAAGATGCCTTGCTCTGGGAAAAGNAGCTGCATCACTA 540
consensus_8316#2      ------------------------------------------------------------
                                                                                  

consensus_8316#1      GAACTTCCATGCAAGTACCAGAACTTC-GGGTGTGTAGGCATTTATCCTTACTACTGCAA 596
consensus_8316#3      ------------------------------------------------------------
consensus_8316#0      GAGCTTNCATGCAAATATCAAAACTTTTGGGNGCTTGGGCATATATCTTTATTACTGNAA 600
consensus_8316#2      ------------------------------------------------------------
                                                                                  

consensus_8316#1      GCTGAAGCATGAGTCACAGTGCCAATATAGGCCTTATAGCTGTCCATATGCTGGATCTGA 656
consensus_8316#3      ------------------------------------------------------------
consensus_8316#0      GCTGAAGCATGAGTCACAGNGGCCATACAGGCCCTATACTTGNCCATATGCTGGATCTGA 660
consensus_8316#2      ------------------------------------------------------------
                                                                                  

consensus_8316#1      ATGCACAGTTGCTGGTGACATTCCATACTTGGTGAATCACTTGAAAGATGACCACAAGGT 716
consensus_8316#3      ------------------------------------------------------------
consensus_8316#0      ATGCACTGGTGCTGGGGACATTTAAGATCTAANAAGGCACTTGNAANATGATCATAAGGG 720
consensus_8316#2      ------------------------------------------------------------
                                                                                  

consensus_8316#1      TGACATGCATAATGGCTGCACCTTCAACCATCGCTATGTCAAGTCGAATCCTCATGAAGT 776
consensus_8316#3      ------------------------------------------------------------
consensus_8316#0      NGACATGCNCAACGGAAGNNCCTT-AATAACCGTTATGTCAAATCAAATCCTCATGAAGT 779
consensus_8316#2      ------------------------------------------------------------
                                                                                  

consensus_8316#1      TGAGAATGCCACCTGGATGCTTACGGTTTTCAGCTGCTTTGGCCAGTACTTCTGCCTACA 836
consensus_8316#3      ------------------------------------------------------------
consensus_8316#0      TGAGAATGCTACCTGGATGCTCACGGTTTTCAGCTGTTTCGGCCAGTACTTTTGCCTGCA 839
consensus_8316#2      ------------------------------------------------------------
                                                                                  

consensus_8316#1      TTTCGAAGCATTTCAGCTGGGGATGGCACCTGTGTACATCGCCTTCCTGAGGTTCATGGG 896
consensus_8316#3      -----------------------------CTGTGTACATCCCCTTCCTGAGGTTCATGGG 31
consensus_8316#0      CTTTGAGGCATTCCAGTTGGGCATGGCACCTGTCTACATCGCCTTCCTACGGTTCATGGG 899
consensus_8316#2      -----------------------------------------------TAATGGTCATACA 13
                                                                     *   * ****   

consensus_8316#1      TGATGACTTGGAAGCAAA---GAACTACAGCTACAGCCTGGAGGTAGGAGGCACTGGCCG 953
consensus_8316#3      GGATGACTTGGAAGCAAA---GAACTACAGCTCCACCCTGGAGGTAGGAGGCCCTGGCCG 88
consensus_8316#0      AGATGATGCAGAAGCCAA---GAACTATAGCTACAGCCTGGAGGTCGGAGGCAGTGGTCG 956
consensus_8316#2      TTGTGCTCCGGATGCAAACCAAGGGTTCACAATCGCCGTCCAACTCGTAGGCATGAACTG 73
                         **     ** ** **       *  *    *  * *  *  * * ****       *

consensus_8316#1      CAAAATGATCTGGCAAGGGGTTCCCCGGAGCATCAGAGACAGCCATCGGAAGGTCCGGGA 1013
consensus_8316#3      CAAAATGATTTGGCAAGGGGTTCCCCGGAGCATCAGAGACACCCATTGGAAGGTCCGGGA 148
consensus_8316#0      GAAGATGACCTGGCAAGGCGTCCCCCGAAGCATCAGAGACAGTCACAGGAAAGTTCGGGA 1016
consensus_8316#2      GGTAAT-ATCAGATGTCTTGCTCTCGAGAAGGTGCCTGC--GTCGCTTGAACTTCCATG- 129
                          ** *   *       *  * *   *   *    *     *    ***  * *  * 

consensus_8316#1      TAGCTATGATGGGCTTATCATCCAACGGAACATGGCCTTGTTCTTCTCTGGTGGAGAAAG 1073
consensus_8316#3      TAGCTATGATGGGGTTATCATCCAACGGAACATGGCCTTGTTTTTTTTTGGGGGAGAAAG 208
consensus_8316#0      CAGCTACGACGGCCTTATCATCCAGCGGAACATGGCCTTGTTCTTCTCCGGTGGCGACAA 1076
consensus_8316#2      CAAGTACCA-GAACTTCGGGTGTGTAGGCATTTATCCTTACTACTGCAGCTGAAGCATGA 188
                       *  **  * *   **    *     ** *  *  ****  *  *           *   

consensus_8316#1      GAAGGAGCTCAAATTGCGGGTCACTGGGAGAATTTGGAAGGAACAGTGAAA-ATAAAATG 1132
consensus_8316#3      GAAGGAGCTCAAATTGGGGGTCCCTGGGGGAATTTGGAAGGACCAGTGAAA-ATAAAATG 267
consensus_8316#0      GAAGGAGCTCAAACTGCGTGTCACCGGAAGGATTTGGAAGGAGCAGTGAATCACAACATC 1136
consensus_8316#2      GTCACAGTGCCAATATAGG--CCTTATAGCTGTCCATATGCTGGATCTGAATGCACAGTT 246
                      *    **  * **    *   *          *    * *    *    *    *   * 

consensus_8316#1      TGAAATGATCTGTTC--ATCGTT--CTTAACCCTTGCATGAACCTATGTATC---ATCAC 1185
consensus_8316#3      GGAAAGGATTTGTTC--ATCGTT--TTTAACCCTTGCATGAACCTATGTTTC---ATCCC 320
consensus_8316#0      TCTAACTTCTCGTTGCGACTGTTAGTTTGATTGCGACATGGATCTTGATTCTTGAATTTC 1196
consensus_8316#2      GCTGGTGACATTCCATACTTGGTGAATCACTTGAAAGATGACCACAAGGTTGACATGCAT 306
                                          * *   *          ***                    

consensus_8316#1      AGTGC-GAGAATTATAGCCATTCATAGGCA----------GTGACTCTAAAATGAAGACT 1234
consensus_8316#3      AGTGG-GGGAATTTTAGCCATTCATAGGCA----------GGGACTTTAAAAAGAAGACT 369
consensus_8316#0      CAGGG-TGAAATGGGATTAATGCGTAAGCGAATTGCTCCGGGAACTAGCTAGGCAGGACC 1255
consensus_8316#2      AATGGCTGCACCTTCAACCATCGCTATGTCAAGT-----CGAATCCTCATGAAGTTGAGA 361
                         *     *     *   **   ** *            *   *           **  

consensus_8316#1      -TGTAATGTTATTAGCTTGTTTTAGCTACCATCTT---CTGTTAGATTGGTGCCTGTGGA 1290
consensus_8316#3      -TGTAATGTTATTAGCTTGTTTTAGCTCCCATTTT---TTGTTAGATTGGGGCCTGTGGA 425
consensus_8316#0      CTGTAAGATTGT-AGACTGTCTTAGCTACCAGCTGCCATTCTTCTTCTAGTGGTTCAGGA 1314
consensus_8316#2      ATGCCAC-CTGGATGCTTACGGTATCCCCTCGTTAACTCCACCATGTTAGTTATTGTGAA 420
                       **  *   *    *  *    ** *  *    *             * *    *  * *

consensus_8316#1      TGACTAGATGACAGTCATGTAGACCAGAGTGGCACTATTGTAGAATTCCTGGCAAA-CTT 1349
consensus_8316#3      TGACTAGATGCCAGTCATGTAGACCAGAGGGGCCCTATTGTAGAATTCTTGGCAAA-ATT 484
consensus_8316#0      ACATTTTGTATGGATGAT-TGTCTCGTGGCACTGATGTAGTAGAATTGAAGGCAAATCTC 1373
consensus_8316#2      -----GTATATCACTGATGTTTACTTATGCAAAGAT-TGGTTCACTTGTCTGCTAAGATA 474
                              *     * ** *        *      * * **  * **    ** **  * 

consensus_8316#1      CTCTTTGCCT-TGAACTGCTTGTTGAGTT-GCCATTCTGTGGTATAGGGAAATC-TAATG 1406
consensus_8316#3      TTTTTTCCCT-TGAACTGCTTGTTGAGTT-GCCATTTTGGGGTATAGGGAAATT-TAATG 541
consensus_8316#0      TTCTTTGCTC-TTAACTTCTCCAAGAATTAGCCAATCTGGCGAATCTTCTGATGGTGACT 1432
consensus_8316#2      GTCCATATTTCTGTACTGAGTTTT--ATGAGCCTTTCT---GTAAAAATAAACATTGGTT 529
                       *   *     *  ***          *  ***  * *   * *       *   *    

consensus_8316#1      GCAATTCATGAGATGAATGTGTTGAACTCTTTTTCATGTTTCCAGCATATTTCTAGCT-- 1464
consensus_8316#3      GCAATTCATGAGAGGAATGGGTTGAACTTTTTTTCATGTTTCCAGCATATTTTTAGCT-- 599
consensus_8316#0      CTGCCAAATGTAAATGATGTAGCTCTCCCCTTTGTATGATTCAAATCTATGTCAGGCCAC 1492
consensus_8316#2      CACTTGTACAGTATGATTGCACT-CTGTACTTTTCATGTCAACTGAGGATGCTGATCATG 588
                             *    *    **           ***  ***          **      *   

consensus_8316#1      -----T-----CTTTGT------------------------------------------- 1471
consensus_8316#3      -----T-----TTTAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATATAAAGA- 648
consensus_8316#0      CATTGT-----TTTGCCGGAAATGTACCCCTGCCAAACCTGCATTTGCTCCTACTACTAC 1547
consensus_8316#2      CAGCATAGTTATTGGTCTAAAATAATCTCTCACCTATGAAGAAACTATGCATCAGAATAT 648
                           *      *                                               

consensus_8316#1      --------------------------
consensus_8316#3      --------------------------
consensus_8316#0      ATGTTCAGCTGTAAATTTGAACAC-- 1571
consensus_8316#2      CCATCTGCTTCCATTTCCAAAAAAAA 674
                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)