cluster # 8320

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Oryza sativa
cluster # 8320 cluster # 8320 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8320#0 length = 1004 sequences # 3

consensus_8320#1 length = 401 sequences # 1
consensus_8320#2 length = 119 sequences # 1

consensusID : consensus_8320#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1004
fasta sequence

                              [AGAAACATCTCTTAAAAGGAAAAAGTACAGCGAAGGTCCCTAAACTTGTCGTCAAGTTACAAAATCATCCATCAACCGCAAAATCAGATATCGACCGTCCCTTAACTAATCAAAACTGGTCATAATAGCTCCTTCGATAGTGTTGACCCCGGTTTTATCCTACGTAGCGGCTGAGTCAACGTAGGACCCATGTGGACCCCACATGTCAGGATGCCACGCCATCTCTTTCCCTTCCTCCTCATACTCTCTCTCTTCTCTTCTTCTTTCTCCTCTTCTCTGGGCAAACTGTTCGGCGGCTGGGGAGGAGGCCGCCGGGGCGAGGCGGCAAAGGAGGAGAGCGGCGCTGCGACGGCTGCCGGCGGCGGCCGCAGTGGGGAGGCGGCCGTTTCATGGAGGCCACATCCCGCACCAACAACACCAACAACCACCCGGCAGCGACGGCGAATGAGGGGATGCTCTCCTTCTCGTCGGTGTCGACGATGCGGCTGTCCACAGGGAGACAGCCGTTGCTCGCCCCCGGCCGCCGCCAGCTTCTCCTCCGCCTCCCGCGCCGGGACGGCGACAGCCGCAGCGCACGCATCAGGCG-GTCGCGGCCATCACCATCCCGAGGTTAGTACTGGTTTCCTTTTAGGCGAACGGCTGCTGCGCCTCGAGGAGAGCGGGGTGGTTGGGGTACAGGCAGAAAGGAAGGAACACCAGCAATAAAAATCAAGGGCTTGTTGAACTTCTCAGACGAGTATGCAGCAACAAACCAGCCGTCCAGATCAACCTCAACTCAACCTGGCGAGCAGAACACGATCGAGAGAAAAGGACAAACTTGTGTGCATATGTACTATGTTTACCATGTCAACATTCACAGATAATTCCCTGAAGCAATTCTATAAAAATCCTGCCATTTTGAGCAAAATGCTCAAGTGTATCGTCTCTGCTCTGAGTTCTGAACTTTGAACATGCAAGCGAAAGCAGAACCAGATGGAGCGCTCTTCTTCCAAGCCGGCCATTGC]

[-] EMBL AK062363             [AGAAACATCTCTTAAAAGGAAAAAGTACAGCGAAGGTCCCTAAACTTGTCGTCAAGTTACAAAATCATCCATCAACCGCAAAATCAGATATCGACCGTCCCTTAACTAATCAAAACTGGTCATAATAGCTCCTTCGATAGTGTTGACCCCGGTTTTATCCTACGTAGCGGCTGAGTCAACGTAGGACCCATGTGGACCCCACATGTCAGGATGCCACGCCATCTCTTTCCCTTCCTCCTCATACTCTCTCTCTTCTCTTCTTCTTTCTCCTCTTCTCTGGGCAAACTGTTCGGCGGCTGGGGAGGAGGCCGCCGGGGCGACGCGGCAAAGGAGGAGAGCGGCGCTGCGACGGCTGCCGGCGGCGGCCGCAGTGGGGAGGCGGCCGTTCCATGGAGGCCACATCCCGCGCCAGCAACACCAACAACCACCCGGCAGCGACGGCGAATGAGGGGATGCTCTCCTCCTCATCGGCGTCGACGACGCGGCTGTCCACGGGGAGACAGCCGTTGCTCGCCCCCGGCCGCCGCCAGCTTCTCCTCCGCCTCCCGCGCCGAGACGGCGACAGCCGCAGCGCACGCATCAGGCG GTCGCGGCCATCACCATCCCGAGGTTAGTACTGGTTTCCTTTTAGGCGAATGGCTGCTGCGCCTCGAGGAGAGCGGGGTGG                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AK099506             [                                                                                                                                                                                                                                                                                                           GGGAGGAGGCAGCCGGGGCGAGGCGGGAGAGGAGGAGAGCGGCGCTGCGACGGCTGCCGGCGGCGGCCGCAGTGGGGAGGCGGCCGTTTCATGGAGGCCACATCCCGCACCAACAACACCAACAACCACCCGGCAGCGACGGCGAATGAGGGGATGCTCTCCTTCTCGTCGGTGTCGACGATGCGGCTGTCCACAGGGAGACAGCCGTTGCTCGCCCCCGGCCGCCGCCAGCTTCTCCTCCGCCTCCCGCGCCGGGACGTCGACAGCCGCAGCGCACGCATCAGGCG GTCGCGGCCATCACCATCCCGAGGTTAGTACTGGTTTCCTTTTAGGCGAACGGCTGCTGCGCCTCGAGGAGAGCGGGGTGGTTGGGGTACAGGCAGAAAGGAAGGAACACCAGCAATAAAAATCAAGGGCTTGTTGAACTTCTCAGACGAGTATGCAGCAACAAACCAGCCGTCCAGATCAACCTCAACTCAACCTGGCGAGCAGAACACGATCGAGAGAAAAGGACAAACTTGTGTGCATATGTACTATGTTTACCATGTCAACATTCACAGATAATTCCCTGAAGCAATTCTATAAAAATCCTGC                                                                                                               ]
[+] EMBL CB650891             [                                                                                                                                                                                                                                                                                                                               AGGCGGCCCTAGAAGAGAGCGGCGCTGCGACGGCTGCCGGCGGCGGCCGCACTGGGGAGGCGGCCGTATCATGGAGGCCACATCCCGCACCAACAACACCAACAACCACCCGGCAGCGACGGCGAATGACGGGATGCTCTCCTTCTCGTCGGTGTCGACGATGCGGCTGTCCACAGGGAGACAGCCGTTGCTCGCCCCCGGCCGCCGCCAGCTTCTCCTCCGCCTCCCGCGCCGGGACCGCGACCTCCGCAGCGCACGCATCATGCGAGACGCGGCCATCACCATCCCGAGGTTAATACTGGTTTCCTTTTAGGCGAACGGCTGCTGCGCCTCGAGGAGAGCGGGGTGGTTGGGGTACAGGCAGAAAGGAAGGAACACCAGCAATAAAAATCAAGGGCTTGTTGAACTTCTCAGACGAGTATGCAGCAACAAACCAGCCGTCCAGATCAACCTCAACTCAACCTGGCGAGCAGAACACGATCGAGAGAAAAGGACAAACTTGTGTGCGTATGTACTATGTTTACCATGTCAACATTCACAGATAATTCCCTGAAGCAATTCTATAAAAATCCTGCCATTTTGAGCAAAATGCTCAAGTGTATCGTCTCTGCTCTGAGTTCTGAACTTTGAACATGCAAGCGAAAGCAGAACCAGATGGAGCGCTCTTCTTCCAAGCCGGCCATTGC]




>consensus_8320#0
AGAAACATCTCTTAAAAGGAAAAAGTACAGCGAAGGTCCCTAAACTTGTCGTCAAGTTAC
AAAATCATCCATCAACCGCAAAATCAGATATCGACCGTCCCTTAACTAATCAAAACTGGT
CATAATAGCTCCTTCGATAGTGTTGACCCCGGTTTTATCCTACGTAGCGGCTGAGTCAAC
GTAGGACCCATGTGGACCCCACATGTCAGGATGCCACGCCATCTCTTTCCCTTCCTCCTC
ATACTCTCTCTCTTCTCTTCTTCTTTCTCCTCTTCTCTGGGCAAACTGTTCGGCGGCTGG
GGAGGAGGCCGCCGGGGCGAGGCGGCAAAGGAGGAGAGCGGCGCTGCGACGGCTGCCGGC
GGCGGCCGCAGTGGGGAGGCGGCCGTTTCATGGAGGCCACATCCCGCACCAACAACACCA
ACAACCACCCGGCAGCGACGGCGAATGAGGGGATGCTCTCCTTCTCGTCGGTGTCGACGA
TGCGGCTGTCCACAGGGAGACAGCCGTTGCTCGCCCCCGGCCGCCGCCAGCTTCTCCTCC
GCCTCCCGCGCCGGGACGGCGACAGCCGCAGCGCACGCATCAGGCGGTCGCGGCCATCAC
CATCCCGAGGTTAGTACTGGTTTCCTTTTAGGCGAACGGCTGCTGCGCCTCGAGGAGAGC
GGGGTGGTTGGGGTACAGGCAGAAAGGAAGGAACACCAGCAATAAAAATCAAGGGCTTGT
TGAACTTCTCAGACGAGTATGCAGCAACAAACCAGCCGTCCAGATCAACCTCAACTCAAC
CTGGCGAGCAGAACACGATCGAGAGAAAAGGACAAACTTGTGTGCATATGTACTATGTTT
ACCATGTCAACATTCACAGATAATTCCCTGAAGCAATTCTATAAAAATCCTGCCATTTTG
AGCAAAATGCTCAAGTGTATCGTCTCTGCTCTGAGTTCTGAACTTTGAACATGCAAGCGA
AAGCAGAACCAGATGGAGCGCTCTTCTTCCAAGCCGGCCATTGC

consensusID : consensus_8320#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 401
fasta sequence

                              [ACAGCCGTTGCTCGCCCCCGGCCGCCGCCAGCTTCTCCTCCGCCTCCCGCGCCGGGACGGCGACAGCCGCAGCGCACGCATCAGGCGGTCGCGGCCATCACCATCCCGAGGTTAGTACTGGTTTCCTTTTAGGCGAACGGCTGCTGCGCCTCGAGGAGAGCGGGGTGGTTGGGGTACAGGCAGAAAGGAAGGAACACCAGCAATAAAAATCAAGGGCTTGTTGAACTTCTCAGACGAGTATGCAGCAACAAACCAGCCGTCCAGATCAACCTCAACTCAACCTGGCGAGCAGAACACGATCGAGAGAAAAGGACAAACTTGTGTGCATATGTACTATGTTTACCATGTCAACATTCACAGATAATTCCCTGAAGCAATTCTATAANAAAAAAAAAAAAAAA]

[+] EMBL AU174092             [ACAGCCGTTGCTCGCCCCCGGCCGCCGCCAGCTTCTCCTCCGCCTCCCGCGCCGGGACGGCGACAGCCGCAGCGCACGCATCAGGCGGTCGCGGCCATCACCATCCCGAGGTTAGTACTGGTTTCCTTTTAGGCGAACGGCTGCTGCGCCTCGAGGAGAGCGGGGTGGTTGGGGTACAGGCAGAAAGGAAGGAACACCAGCAATAAAAATCAAGGGCTTGTTGAACTTCTCAGACGAGTATGCAGCAACAAACCAGCCGTCCAGATCAACCTCAACTCAACCTGGCGAGCAGAACACGATCGAGAGAAAAGGACAAACTTGTGTGCATATGTACTATGTTTACCATGTCAACATTCACAGATAATTCCCTGAAGCAATTCTATAANAAAAAAAAAAAAAAA]




>consensus_8320#1
ACAGCCGTTGCTCGCCCCCGGCCGCCGCCAGCTTCTCCTCCGCCTCCCGCGCCGGGACGG
CGACAGCCGCAGCGCACGCATCAGGCGGTCGCGGCCATCACCATCCCGAGGTTAGTACTG
GTTTCCTTTTAGGCGAACGGCTGCTGCGCCTCGAGGAGAGCGGGGTGGTTGGGGTACAGG
CAGAAAGGAAGGAACACCAGCAATAAAAATCAAGGGCTTGTTGAACTTCTCAGACGAGTA
TGCAGCAACAAACCAGCCGTCCAGATCAACCTCAACTCAACCTGGCGAGCAGAACACGAT
CGAGAGAAAAGGACAAACTTGTGTGCATATGTACTATGTTTACCATGTCAACATTCACAG
ATAATTCCCTGAAGCAATTCTATAANAAAAAAAAAAAAAAA

consensusID : consensus_8320#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 119
fasta sequence

                              [ANNGGTGAGCCAGAGGNACGAGNACAAGNGGGAAAAGGACAAACTTGTGTGCATATGTACTATGTTTACCATGTCAACATTCACAGATAATTCCCTGAAGCAATTCTATAAAAAAAAAA]

[+] EMBL CA763999             [ANNGGTGAGCCAGAGGNACGAGNACAAGNGGGAAAAGGACAAACTTGTGTGCATATGTACTATGTTTACCATGTCAACATTCACAGATAATTCCCTGAAGCAATTCTATAAAAAAAAAA]




>consensus_8320#2
ANNGGTGAGCCAGAGGNACGAGNACAAGNGGGAAAAGGACAAACTTGTGTGCATATGTAC
TATGTTTACCATGTCAACATTCACAGATAATTCCCTGAAGCAATTCTATAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8320#0      AGAAACATCTCTTAAAAGGAAAAAGTACAGCGAAGGTCCCTAAACTTGTCGTCAAGTTAC 60
consensus_8320#1      ------------------------------------------------------------
consensus_8320#2      ------------------------------------------------------------
                                                                                  

consensus_8320#0      AAAATCATCCATCAACCGCAAAATCAGATATCGACCGTCCCTTAACTAATCAAAACTGGT 120
consensus_8320#1      ------------------------------------------------------------
consensus_8320#2      ------------------------------------------------------------
                                                                                  

consensus_8320#0      CATAATAGCTCCTTCGATAGTGTTGACCCCGGTTTTATCCTACGTAGCGGCTGAGTCAAC 180
consensus_8320#1      ------------------------------------------------------------
consensus_8320#2      ------------------------------------------------------------
                                                                                  

consensus_8320#0      GTAGGACCCATGTGGACCCCACATGTCAGGATGCCACGCCATCTCTTTCCCTTCCTCCTC 240
consensus_8320#1      ------------------------------------------------------------
consensus_8320#2      ------------------------------------------------------------
                                                                                  

consensus_8320#0      ATACTCTCTCTCTTCTCTTCTTCTTTCTCCTCTTCTCTGGGCAAACTGTTCGGCGGCTGG 300
consensus_8320#1      ------------------------------------------------------------
consensus_8320#2      ------------------------------------------------------------
                                                                                  

consensus_8320#0      GGAGGAGGCCGCCGGGGCGAGGCGGCAAAGGAGGAGAGCGGCGCTGCGACGGCTGCCGGC 360
consensus_8320#1      ------------------------------------------------------------
consensus_8320#2      ------------------------------------------------------------
                                                                                  

consensus_8320#0      GGCGGCCGCAGTGGGGAGGCGGCCGTTTCATGGAGGCCACATCCCGCACCAACAACACCA 420
consensus_8320#1      ------------------------------------------------------------
consensus_8320#2      ------------------------------------------------------------
                                                                                  

consensus_8320#0      ACAACCACCCGGCAGCGACGGCGAATGAGGGGATGCTCTCCTTCTCGTCGGTGTCGACGA 480
consensus_8320#1      ------------------------------------------------------------
consensus_8320#2      ------------------------------------------------------------
                                                                                  

consensus_8320#0      TGCGGCTGTCCACAGGGAGACAGCCGTTGCTCGCCCCCGGCCGCCGCCAGCTTCTCCTCC 540
consensus_8320#1      -------------------ACAGCCGTTGCTCGCCCCCGGCCGCCGCCAGCTTCTCCTCC 41
consensus_8320#2      ------------------------------------------------------------
                                                                                  

consensus_8320#0      GCCTCCCGCGCCGGGACGGCGACAGCCGCAGCGCACGCATCAGGCGGTCGCGGCCATCAC 600
consensus_8320#1      GCCTCCCGCGCCGGGACGGCGACAGCCGCAGCGCACGCATCAGGCGGTCGCGGCCATCAC 101
consensus_8320#2      ------------------------------------------------------------
                                                                                  

consensus_8320#0      CATCCCGAGGTTAGTACTGGTTTCCTTTTAGGCGAACGGCTGCTGCGCCTCGAGGAGAGC 660
consensus_8320#1      CATCCCGAGGTTAGTACTGGTTTCCTTTTAGGCGAACGGCTGCTGCGCCTCGAGGAGAGC 161
consensus_8320#2      ------------------------------------------------------------
                                                                                  

consensus_8320#0      GGGGTGGTTGGGGTACAGGCAGAAAGGAAGGAACACCAGCAATAAAAATCAAGGGCTTGT 720
consensus_8320#1      GGGGTGGTTGGGGTACAGGCAGAAAGGAAGGAACACCAGCAATAAAAATCAAGGGCTTGT 221
consensus_8320#2      ------------------------------------------------------------
                                                                                  

consensus_8320#0      TGAACTTCTCAGACGAGTATGCAGCAACAAACCAGCCGTCCAGATCAACCTCAACTCAAC 780
consensus_8320#1      TGAACTTCTCAGACGAGTATGCAGCAACAAACCAGCCGTCCAGATCAACCTCAACTCAAC 281
consensus_8320#2      --------------------------------------------------ANNGGTGAGC 10
                                                                             * * *

consensus_8320#0      CTGGCGAGCAGAACACGATCGAGAGAAAAGGACAAACTTGTGTGCATATGTACTATGTTT 840
consensus_8320#1      CTGGCGAGCAGAACACGATCGAGAGAAAAGGACAAACTTGTGTGCATATGTACTATGTTT 341
consensus_8320#2      CAGAGGNAC-GAGNACAA--GNGGGAAAAGGACAAACTTGTGTGCATATGTACTATGTTT 67
                      * *  *  * **  ** *  * * ************************************

consensus_8320#0      ACCATGTCAACATTCACAGATAATTCCCTGAAGCAATTCTATAAAAATCCTGCCATTTTG 900
consensus_8320#1      ACCATGTCAACATTCACAGATAATTCCCTGAAGCAATTCTATAANAA-------AAAAAA 394
consensus_8320#2      ACCATGTCAACATTCACAGATAATTCCCTGAAGCAATTCTATAAAAAAAAAA-------- 119
                      ******************************************** **             

consensus_8320#0      AGCAAAATGCTCAAGTGTATCGTCTCTGCTCTGAGTTCTGAACTTTGAACATGCAAGCGA 960
consensus_8320#1      AAAAAAA----------------------------------------------------- 401
consensus_8320#2      ------------------------------------------------------------
                                                                                  

consensus_8320#0      AAGCAGAACCAGATGGAGCGCTCTTCTTCCAAGCCGGCCATTGC 1004
consensus_8320#1      --------------------------------------------
consensus_8320#2      --------------------------------------------