These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8324#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 750 fasta sequence [AGGAGTAACGGAAAGGGAGAGGTGGAACCTGCGGAAAACTTCTCCTCTCTCTCAACGTGGGTCCATATTCCCCTCCCCATCGCTGCACCTTTCTTCTGCATGGTCGGTGATGTCGTGCCGGATCCGGCTATCCCGATCGAGTCCGGTCGCTTGTTGGTGAGGTGCCGCCGCGGCTGCCGCCAGATCCGGCGGATCTAGGGTCGTCCATCGCCGTNCNGAGCGCCGTGGTGGCTCTCACGTCGTCGGGGGCTGCCGAAGCCGGGCCGGGAAGCACGTNCACGATCTTCGGTTAATTGAGGAGCACAGGGCGGTGCGGCCCTTGGCGGCACAGCGGCAAAATCTGATGATAATGATCCGGCGACAATGGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACTTATATTTTGCTGCTGTGTTTGCCGATAGTTCGGTTGCATTGCTTGCTATTGACCTCTTCTCTTGTTGATCTGGTGGGTGGCTCCCGTCTGGTTGCGTTGATTGCTATTTACCTCTTCTCTTGTTGAACTGGTTGGTGGTGGCTCCCTTCTGGTGTTTGGTATTTATTGGAGAGTCAATCAAGATTAGTTTAGGAATCGGTGACAATCAAGATTGTCAGAGTCGGATTGTTTAGGGTGTTTTTATTTTGGAATCTACTGTCTTAGGCCGTGTTTNGATCCAAAGTTTGGATCCAAACTTCAGTCCTTTTTCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL OS0011A [AGGAGTAACGGAAAGGGAGAGGTGGAACCTGCGGAAAACTTCTCCTCTCTCTCAACGTGGGTCCATATTCCCCTCCCCATCGCTGCACCTTTCTTCTGCATGGTCGGTGATGTCGTGCCGGATCCGGCTATCCCGATCGAGTCCGGTCGCTTGTTGGTGAGGTGCCGCCGCGGCTGCCGCCAGATCCGGCGGATCTAGGGTCGTCCATCGCCGTNCNGAGCGCCGTGGTGGCTCTCACGTCGTCGGGGGCTGCCGAAGCCGGGCCGGGAAGCACGTNCACGATCTTCGGTTAATTGAGGAGCACAGGGCGGTGC ] [+] EMBL C97853 [ caATATTCCCTTCCCAATCGCTGCACCTTTCTTCTGCATGGTCGGTGATGTCGTNCCGGATCCGGCTATCCCGATCGAGTCCGGTCGCTTNTTGGTGAGGTNCCGCCGC GCTGCCGCCAGATCCGGCGGATNTAGGGTCGTCCATCGCCGTCCCGAGCGCCGTGGTGGNTCTCACGTCGTCGGGGGCTGCCGAAGCCGGGCCGGGAAGCACGTGCACGATCTCCGGTTAATTGAGGAGCACAGGGCGGTGCGGCCCTTGGCGGCACAGCGGCAAAATCTGATGATAATGATCCGGCGACAATGGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACTTATATTTTGCTGCTGTGTTTGCCGATAGTTCGGTTGCATTGCTTGCTATTGACCTCTTCTCTTGTTGATCTGGTGGGTGGCTCCCGTCTGGTTGCGTTGATTGCTATTTACCTCTTCTCTTGTTGAACTGGTTGGTGGTGGCTCCCTTCTGGTGTTTGGTATTTATTGGAGAGTCAATCAAGATTAGTTTAGGAATCGGTGACAATCAAGATTGTCAGAGTCGGATTGTTTAGGGTGTTTTTATTTTGGAATCTACTGTCTTAGGCCGTGTTTNGATCCAAAGTTTGGATCCAAACTTCAGTCCTTTTTCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_8324#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [GGAATACCTTGCGGCGTAGATCCAGCGGGCGGCGAGCTTCGCTGGTGGATAGCTTTTGTGCTGATTGCTCGAGGTCGGCGAGCGCTGGTCATCTTGACAGTGGCGAGACGGCTCGGAGAAGGGAAAGGTGGAGGCAGTGCGGTGGTTGGGTCACGGATCGGCTAGGGTGGCGAGCCAGGGAGAATCGGCAGGCAGGCAAAGGAGGGAAAGATACCAAAAAAACGTTGTCAGAGGAAAAAAAACAAACTGTAGAAGGCAAATCTGGCAACTTGGAGCTGCTATTTTGCTGGCAATCAGAACAGCAAAATCAAACTGCAAAAGGCTAAATCTGATGATAATGATCCGGTGACAATCGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACTTATATTTTGCAGCTGTGCTTGCCGATAGTGGTTGGTGGCTCCCGTCTGGTTGCGTTGATTGCTATTGATCTCTTCTCTTGTTGATCTGGTTGGTGGATCCCTTCTGGTGCTTGATATTTATTGGAGTCAATCAAAATTAGCTTAGGAATCGGTGAAAATTGTCAGAGTCGGATAGTGTGTAGGGTCTTTTAATAAAGGAATCATACTGACTT] [+] EMBL CB965641 [GGAATACCTTGCGGCGTAGATCCAGCGGGCGGCGAGCTTCGCTGGTGGATAGCTTTTGTGCTGATTGCTCGAGGTCGGCGAGCGCTGGTCATCTTGACAGTGGCGAGACGGCTCGGAGAAGGGAAAGGTGGAGGCAGTGCGGTGGTTGGGTCACGGATCGGCTAGGGTGGCGAGCCAGGGAGAATCGGCAGGCAGGCAAAGGAGGGAAAGATACCAAAAAAACGTTGTCAGAGGAAAAAAAACAAACTGTAGAAGGCAAATCTGGCAACTTGGAGCTGCTATTTTGCTGGCAATCAGAACAGCAAAATCAAACTGCAAAAGGCTAAATCTGATGATAATGATCCGGTGACAATCGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACTTATATTTTGCAGCTGTGCTTGCCGATAGTGGTTGGTGGCTCCCGTCTGGTTGCGTTGATTGCTATTGATCTCTTCTCTTGTTGATCTGGTTGGTGGATCCCTTCTGGTGCTTGATATTTATTGGAGTCAATCAAAATTAGCTTAGGAATCGGTGAAAATTGTCAGAGTCGGATAGTGTGTAGGGTCTTTTAATAAAGGAATCATACTGACTT] consensusID : consensus_8324#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [TGCCAAATCTGATGAGGAGTAACGGAAAGGGAGAGGTGGAACCTGCGGAAAACTTCTCCTCTCTCTCAACGTGGGTCCATATTCCCCTCCCCATCGCTGCACCTTTCTTCTGCATGGTCGGTGATGTCGTGCCGGATCCGGCTATCCCGATCGAGTCCGGTCGCTTGTTGGTGAGGTGCCGCCGCGGCTGCCGCCAGATCCGGCGGATCTAGGGTCGTCCATCGCCGTCCCGAGCGCCGTGGTGGCTCTCACGTCGTCGGGGGCTGCCGAAGCCGGGCCGGGAAGCACGTGCACGATCTCCGGTTAATTGAGGAGCACAGGGCGGTGCGGCCCTTGGCGGCACAGCGGCNAAATCTGATGATAATGATCCGGCGACAATGGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACTTATATTTTGCTGCTGTGTTTGCCGATAGTTCGGTTGCATTGCTTGCTATTGACCTCTTCTCTTGTTGATCTGGTGGGTGGCTCCCGTCTGGTTGCGTTGATTGCTATNTACCTCTTCTCTTGTTGAAAAAAAANACCAAAAAGAGAAAAAAGAGAAAAAAAGACAAAATAAAATAACCTCGAGGGG] [+] EMBL CA755254 [TGCCAAATCTGATGAGGAGTAACGGAAAGGGAGAGGTGGAACCTGCGGAAAACTTCTCCTCTCTCTCAACGTGGGTCCATATTCCCCTCCCCATCGCTGCACCTTTCTTCTGCATGGTCGGTGATGTCGTGCCGGATCCGGCTATCCCGATCGAGTCCGGTCGCTTGTTGGTGAGGTGCCGCCGCGGCTGCCGCCAGATCCGGCGGATCTAGGGTCGTCCATCGCCGTCCCGAGCGCCGTGGTGGCTCTCACGTCGTCGGGGGCTGCCGAAGCCGGGCCGGGAAGCACGTGCACGATCTCCGGTTAATTGAGGAGCACAGGGCGGTGCGGCCCTTGGCGGCACAGCGGCNAAATCTGATGATAATGATCCGGCGACAATGGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACTTATATTTTGCTGCTGTGTTTGCCGATAGTTCGGTTGCATTGCTTGCTATTGACCTCTTCTCTTGTTGATCTGGTGGGTGGCTCCCGTCTGGTTGCGTTGATTGCTATNTACCTCTTCTCTTGTTGAAAAAAAANACCAAAAAGAGAAAAAAGAGAAAAAAAGACAAAATAAAATAACCTCGAGGGG] consensusID : consensus_8324#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence [AGACAAGGGGGGATCGGCTAGGGTGGCGAGCCAGGGAGAATCGGCAGGCAGGCAAAGGAGGGAAAGATACCAAAAAAACGTTGTCAGAGGAAAAAAAACAAACTGTAGAAGGCAAATCTGGCAACTTGTAGCTGCTATTTTGCTGGCAATCAGAACAGCAAAATCAAACTGCAAAAGGCTAAATCTGATGATAATGATCCGGTGACAATCGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACTTATATTTTGCAGCTGTGCTTGCCGATAGTGGTTGGTGGCTCCCGTCTGGTTGCATTGATTGCTATTGATCTCTTCTCTTGTTGATCTGGTTGGTGGCTCCCTTCTGGTGCTTGATATTTATTGGAGTCAATCAAAATTAGCTTAGGAATCGGTGAAAATTGTCAGAGTCGGATTGTGTGTAGGGTCTTTTTGTTTTGGAATCTACTGCCTTATTGCTATTGTTGTCATATGTTAATTGGTGTCATATTACTATTGCACATGTGTCCGATCAGATCAGCACAAAGTTTTGGCTATAGGATACTCTGGAAAAGCTATTGCAAAAAAAAAAAAAAA] [-] EMBL CA761376 [AGACAAGGGGGGATCGGCTAGGGTGGCGAGCCAGGGAGAATCGGCAGGCAGGCAAAGGAGGGAAAGATACCAAAAAAACGTTGTCAGAGGAAAAAAAACAAACTGTAGAAGGCAAATCTGGCAACTTGTAGCTGCTATTTTGCTGGCAATCAGAACAGCAAAATCAAACTGCAAAAGGCTAAATCTGATGATAATGATCCGGTGACAATCGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACTTATATTTTGCAGCTGTGCTTGCCGATAGTGGTTGGTGGCTCCCGTCTGGTTGCATTGATTGCTATTGATCTCTTCTCTTGTTGATCTGGTTGGTGGCTCCCTTCTGGTGCTTGATATTTATTGGAGTCAATCAAAATTAGCTTAGGAATCGGTGAAAATTGTCAGAGTCGGATTGTGTGTAGGGTCTTTTTGTTTTGGAATCTACTGCCTTATTGCTATTGTTGTCATATGTTAATTGGTGTCATATTACTATTGCACATGTGTCCGATCAGATCAGCACAAAGTTTTGGCTATAGGATACTCTGGAAAAGCTATTGCAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8324#1 ----------------GGAATACCTTGCGGCGTAGATCCAGCGGGCGGCGAGCTTCGCTG 44 consensus_8324#3 ------------------------------------------------------------ consensus_8324#0 --------------AGGAGTAACGGAAAGGGAGAGGTGGAACCTGCGGAAAACTTCTCCT 46 consensus_8324#2 TGCCAAATCTGATGAGGAGTAACGGAAAGGGAGAGGTGGAACCTGCGGAAAACTTCTCCT 60 consensus_8324#1 GTGGATAGCTTTTGTGCTGATTGCTCGAGGTCGGCGA-GCGCTGGTCATCTTGACAGT-G 102 consensus_8324#3 ------------------------------------------------------------ consensus_8324#0 CTCTCTCAACGTGGGTCCATATTCCCCTCCCCATCGCTGCACCTTTCTTCTGCATGGTCG 106 consensus_8324#2 CTCTCTCAACGTGGGTCCATATTCCCCTCCCCATCGCTGCACCTTTCTTCTGCATGGTCG 120 consensus_8324#1 GCGAGACGGCTCGGAGAAGGGAAAGGTGGAGGCAGTGCGGTGGTTGG---GTCACGGATC 159 consensus_8324#3 ----------------------------------------AGACAAG---G--GGGGATC 15 consensus_8324#0 GTGATGTCGTGCCGGATCCGGCTATCCCGATCGAGTCCGGTCGCTTGTTGGTGAGGTGCC 166 consensus_8324#2 GTGATGTCGTGCCGGATCCGGCTATCCCGATCGAGTCCGGTCGCTTGTTGGTGAGGTGCC 180 * * * * consensus_8324#1 GGCTAGGGTGGCG--AGCCAGGGAGAATCGGCAGGCAGGCAAAGGAGGGAAAGATACCAA 217 consensus_8324#3 GGCTAGGGTGGCG--AGCCAGGGAGAATCGGCAGGCAGGCAAAGGAGGGAAAGATACCAA 73 consensus_8324#0 GCCGCGGCTGCCGCCAGATCCGGCGGATCTAGGGTCGTCCATCGCCGTNCNGAGCGCCGT 226 consensus_8324#2 GCCGCGGCTGCCGCCAGATCCGGCGGATCTAGGGTCGTCCATCGCCGTCCCGAGCGCCGT 240 * * ** ** ** ** ** * *** * * ** * * ** consensus_8324#1 AAAA------ACGTTGTCAGAGGAAAAAAAACAAACTGTAGAAGGCAAATCTGGCAACTT 271 consensus_8324#3 AAAA------ACGTTGTCAGAGGAAAAAAAACAAACTGTAGAAGGCAAATCTGGCAACTT 127 consensus_8324#0 GGTGGCTCTCACGTCGTCGGGGGCTGCCGAAGCCGGGCCGGGAAGCACGTNCACGATCTT 286 consensus_8324#2 GGTGGCTCTCACGTCGTCGGGGGCTGCCGAAGCCGGGCCGGGAAGCACGTGCACGATCTC 300 **** *** * ** ** * * *** * * ** consensus_8324#1 GGAGCTGCTATTTTGCTGGCAATCAGAACAGCAAAATCAAACTGCAAAA-GGCTAAATCT 330 consensus_8324#3 GTAGCTGCTATTTTGCTGGCAATCAGAACAGCAAAATCAAACTGCAAAA-GGCTAAATCT 186 consensus_8324#0 ----CGGTTAATTGAGGAGCACAGGGCGGTGCGGCCCTTGGCGGCACAGCGGCAAAATCT 342 consensus_8324#2 ----CGGTTAATTGAGGAGCACAGGGCGGTGCGGCCCTTGGCGGCACAGCGGCNAAATCT 356 * * ** ** *** * ** * *** * *** ****** consensus_8324#1 GATGATAATGATCCGGTGACAATCGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACT 390 consensus_8324#3 GATGATAATGATCCGGTGACAATCGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACT 246 consensus_8324#0 GATGATAATGATCCGGCGACAATGGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACT 402 consensus_8324#2 GATGATAATGATCCGGCGACAATGGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACT 416 **************** ****** ************************************ consensus_8324#1 TATATTTTGCAGCTGTGCTTGCCGATAGTGGTTGGTGGCTCCCGTCTGGTTGCGTTGATT 450 consensus_8324#3 TATATTTTGCAGCTGTGCTTGCCGATAGTGGTTGGTGGCTCCCGTCTGGTTGCATTGATT 306 consensus_8324#0 TATATTTTGCTGCTGTGTTTGCCGATAGT----------------TCGGTTGCATTGCTT 446 consensus_8324#2 TATATTTTGCTGCTGTGTTTGCCGATAGT----------------TCGGTTGCATTGCTT 460 ********** ****** *********** ****** *** ** consensus_8324#1 GCTATTGATCTCTTCTCTTGTTGATCTGGTTGGTGGATCCCTTCTGGT-GC-TTGATATT 508 consensus_8324#3 GCTATTGATCTCTTCTCTTGTTGATCTGGTTGGTGGCTCCCTTCTGGT-GC-TTGATATT 364 consensus_8324#0 GCTATTGACCTCTTCTCTTGTTGATCTGGTGGGTGGCTCCCGTCTGGTTGCGTTGATTGC 506 consensus_8324#2 GCTATTGACCTCTTCTCTTGTTGATCTGGTGGGTGGCTCCCGTCTGGTTGCGTTGATTGC 520 ******** ********************* ***** **** ****** ** ***** consensus_8324#1 TATTGGAGTCAATCAAAATTAGCTTAGGAATCGGTGAAAATTGTCAGAGTCGGATAGTGT 568 consensus_8324#3 TATTGGAGTCAATCAAAATTAGCTTAGGAATCGGTGAAAATTGTCAGAGTCGGATTGTGT 424 consensus_8324#0 TATTTACCTCTTCTCTTGTTGAACTGGTTGGTGGTGGCTCCCTTCTGGTGTTTGGTATTT 566 consensus_8324#2 TATNTACCTCTTCTCTTGTTGAA---------AAAAAANACCAAAAAGAGAA-AAAAGAG 570 *** ** ** consensus_8324#1 GTAGGGTCTTTTAATAAAGGAATCATACTGACTT-------------------------- 602 consensus_8324#3 GTAGGGTCTTTTTGTTTTGGAATC-TACTGCCTTATTGCTATTGTTGTCATATGTTAATT 483 consensus_8324#0 ATTGGAGAGTCAATCAAGATTAGTTTAGGAATCGGTGACAATCAAGATTGTCAGAGTCGG 626 consensus_8324#2 AAAAAAAGACAAAATAAAATAACCTCGAGGGG---------------------------- 602 * consensus_8324#1 ------------------------------------------------------------ consensus_8324#3 GGTGTCATATTACTATTGCACATGTGTCCGATCAGATCAGCACAAAGTTTTGGCTATAGG 543 consensus_8324#0 ATTGTTTAGGGTGTTTTTATTTTGGAATCTACTGTCTTAGGCCGTGTTTNGATCCAAAGT 686 consensus_8324#2 ------------------------------------------------------------ consensus_8324#1 ------------------------------------------------------------ consensus_8324#3 ATACTCTGGAAAAGCTATTGCAAAAAAAAAAAAAAA------------------------ 579 consensus_8324#0 TTGGATCCAAACTTCAGTCCTTTTTCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 746 consensus_8324#2 ------------------------------------------------------------ consensus_8324#1 ---- consensus_8324#3 ---- consensus_8324#0 AAAA 750 consensus_8324#2 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||