These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8328#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1167 fasta sequence [TGGGAAGGTCACGGAGGAGCTACGCGCGGCTTCTTCTCCTAGGGTTCCTACTGCTACGGTTCAGCTGGTGCTTGGCGGTGGCTGATGACGGCGGAGGCGCGGAGGAAGGGGGAGGGATTTTTCCGGTGGTGGTGAGCACCTGGCCTTTCCGGGAGGCGGTCAGGGCGGCCTGGGAGGTGGTGTCAGCCAGTGGCGGCGCAGGTTGTTCGGCCGTGGATGCCGTCGTCGCCGGCTGCTCCGCCTGCGAGGTGCTCCGCTGTGATGGCACAGTTGGCCCAGGTGGAAGCCCAGATGAGAATGGTGAAACTACATTAGATGCTCTCATCATGGATGGGACCACAATGGAAATCGGAGCTGTCGCTGCCATGAGATATGTAAAGGATGGAATCA-GAGCGGCAAAGTTGGTTATGGACCATACTGAACATACTCTTCTTGTTGGAGAGAAGGCAACATCCTTTGCGATTTCAATGGGACTTGCGGGGCCAGCTGATCTGAGCTCACCGGAGTCTATCGGAAAATGGACAATCTGGAGACAGAACCATTGTCAACCTAACTTCTGGAAAAATGTTGTTCCTGCTGGTAGCTGTGGCCCGTACAATGCTATTGATGTACCATCAGGGGAGTGTAAGGCCTCTGCCAAACGTGTGCTAGAGCGGACTCAGGGGGACATTTGTCAAGGATTATTTGAACCTAATAATTTACTGGAGCCAATGAACTCCCGTCTAAAAATCGTTAATCGCCACAACCATGATACAATCTCTATGGCTGTGATTGACAAGATGGGTCGCATAGCGGCTGGCACATCGACCAATGGTGCTACATTCAAAATTCCAGGAAGGGTAGGTGTTGGACCAATACCAGGATCTTCTGCATATGCTGATGATGAAGTTGGTGCATGTGGAGCAACTGGTGATGGTGATATTATGATGCGCTTCCTTCCGTGTTATCAGGTAGTAGAGAGCATGCGACGAGGGATGGAGCCTCGGGATGCTGCCATGGATGCTATATTAAGAATTGCCCGCAAGTACCCGGACTTTGNTGGTGCTGTATTTGCAATTAACAAGAAAGGAGTGCATGCTGGGGCATGCCACGGATGGACATTCCAGTATTCTGTCAGGGAATTCTAGCATGCANGATGGNGGGAGGTCATCACTGTATCACCTTTAC] [+] EMBL AK063296 [TGGGAAGGTCACGGAGGAGCTACGCGCGGCTTCTTCTCCTAGGGTTCCTACTGCTACGGTTCAGCTGGTGCTTGGCGGTGGCTGATGACGGCGGAGGCGCGGAGGAAGGGGGAGGGATTTTTCCGGTGGTGGTGAGCACCTGGCCTTTCCGGGAGGCGGTCAGGGCGGCCTGGGAGGTGGTGTCAGCCAGTGGCGGCGCAGGTTGTTCGGCCGTGGATGCCGTCGTCGCCGGCTGCTCCGCCTGCGAGGTGCTCCGCTGTGATGGCACAGTTGGCCCAGGTGGAAGCCCAGATGAGAATGGTGAAACTACATTAGATGCTCTCATCATGGATGGGACCACAATGGAAATCGGAGCTGTCGCTGCCATGAGATATGTAAAGGATGGAATCA GAGCGGCAAAGTTGGTTATGGACCATACTGAACATACTCTTCTTGTTGGAGAGAAGGCAACATCCTTTGCGATTTCAATGGGACTTGTGGGGCCAGCTGATCTGAGCTCACCGGAGTCTATCGGAAAATGGACAATTTGGAGACAGAACCATTGTCAACCTAACTTCTGGAAAAATGTTGTTCCTGCTGGTAGCTGTGGCCCGTACAATGCTATTGATGTACCATCAGGGGAGTCTAAGGCCTCTGCCAAACGTGTGCTAGAGCGGACTCAGGGGGACATTTGTCAAGGATTATTTGAACCTAATAATTTACTGGAGCCAATGAACTCCCGTCTAAAAATCGTTAATCGCCACAACCATGATACAATCTCTATGGCTGTGATTGACAAGATGGGTCGCATAGCGGCTGGCACATCGACCAATGGTGCTACATTCAAAATTCCAG ] [+] EMBL CA765747 [ GGATGGGACCACAATGGAAATCGGAGCTGTCGCTGCCATGAGATATGTAAAGGATGGAATCACGAGCGGCAAAGTTGGTTGTGGACCATACTGAACATACTCTTCTTGTTGGAGAGAAGGCAACATCCTTTGCGATTTCAATGGGACTTGCGGGGCCAGCTGATCTGAGCTCACCGGAGTCTATCGGAAAATGGACAATCTGGAGACAGAACCATTGTCAACCTAACTTCTGGAAAAATGTTGTTCCTGCTGGTAGCTGNGGCCCGTACAATGCTATTGATGTACCATCAGGGGAGTGTAAGGCCTCTGCCAAACGTGTGCTAGAGCGGACTCAGGGGGACATTTGTCAAGGATTATTTGAACCTAATAATTTACTGGAGCCAATGAACTCCCGTCTAAAAATCGTTAATCGCCACAACCATGATACAATCTCTATGGCTGTGATTGACAAGATGGGTCGCATAGCGGCTGGCACATCGACCAATGGTGCTACATTCAAAATTCCAG ] [+] EMBL CB096766 [ aaggggTATGTAAAGGATGGAAT A GAGCGGCAAAGTTGGTTATGGACCCTACTGAACACACTCTTCTTGTTGGAGAGAAGGCAACATCCTTTGCGATTTCAATGGGACTTGCGGGGCCAGCTGATCTGAGCTCACCGGAGTCTATCGGAAAATGGACAATCTGGAGACAGAACCATTGTCAACCTAACTTCTGGAAAAATGTTGTTCCTGCTGGTAGCTGTGGCCCGTACAATGCTATTGATGTACCATCAGGGGAGTGTAAGGCCTCTGCCAAACGTGTGCTAGAGCGGACTCAGGGGGACATTTGTCAAGGATTATTTGAACCTAATAATTTACTGGAGCCAATGAACTCCCGTCTAAAAATCGTTAATCGCCACAACCATGATACAATCTCTATGGCTGTGATTGACAAGATGGGTCGCATAGCGGCTGGCACATCGACCAATGGTGCTACATTCAAAATTCCAGGAAGGGTAGGTGTTGGACCAATACCAGGATCTTCTGCATATGCTGATGATGAAGTTGGTGCATGTGGAGCAACTGGTGATGGTGATATTATGATGCGCTTCCTTCCGTGTTATCAGGTAGTAGAGAGCATGCGACGAGGGATGGAGCCTCGGGATGCTGCCATGGATGCTATATTAAGAATTGCCCGCAAGTACCCGGACTTTGNTGGTGCTGTATTTGCAATTAACAAGAAAGGAGTGCATGCTGGGGCATGCCACGGATGGACATTCCAGTATTCTGTCAGGGAATTCTAGCATGCANGATGGNGGGAGGTCATCACTGTATCACCTTTAC] consensusID : consensus_8328#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 538 fasta sequence [CATGTAGTCTGGCGTTAGTATTTTTATTGATAGGCTGAGTTTACTGATGGCCTCATGCTCCATGTAATCTTCTTATATTTGCTATAGTTATCAGGTAGTAGAGAGCATGCGACGAGGGATGGAGCCTCGGGATGCTGCCATGGATGCTATATTAAGAATTGCCCGCAAGTACCCGGACTTTGTTGGTGCTGTATTTGCAATTAACAAGAAAGGAGTGCATGCTGGGGCATGCCACGGATGGACATTCCAGTATTCTGTCAGGAATTCTAGCATGCAGGATGTGGAGGTCATCACTGTATCACCTTAACATGGGCAGATCGTAACAGCATATGGTGCGTCACCAATATGGCATTTTTCGAACTGGGGATACCCCATTTCCATTCACCAGCAGGTCATGTTTCTCATGATCTAGAATTTTCATCATTCAGTCCCCTGTCAATGCAGCAATGTTATTTGGGGATTGTACTGGCTTATTATTGGATTGCACTCCTCCTGGAAGTTCAGACGGCCTTGTAAGCAGATTGGATGCACTCAATTC] [-] EMBL CB639074 [CATGTAGTCTGGCGTTAGTATTTTTATTGATAGGCTGAGTTTACTGATGGCCTCATGCTCCATGTAATCTTCTTATATTTGCTATAGTTATCAGGTAGTAGAGAGCATGCGACGAGGGATGGAGCCTCGGGATGCTGCCATGGATGCTATATTAAGAATTGCCCGCAAGTACCCGGACTTTGTTGGTGCTGTATTTGCAATTAACAAGAAAGGAGTGCATGCTGGGGCATGCCACGGATGGACATTCCAGTATTCTGTCAGGAATTCTAGCATGCAGGATGTGGAGGTCATCACTGTATCACCTTAACATGGGCAGATCGTAACAGCATATGGTGCGTCACCAATATGGCATTTTTCGAACTGGGGATACCCCATTTCCATTCACCAGCAGGTCATGTTTCTCATGATCTAGAATTTTCATCATTCAGTCCCCTGTCAATGCAGCAATGTTATTTGGGGATTGTACTGGCTTATTATTGGATTGCACTCCTCCTGGAAGTTCAGACGGCCTTGTAAGCAGATTGGATGCACTCAATTC] [-] EMBL CB638987 [ ACGGATGGACATTCCAGTATTCTGTCAGGAATTCTAGCATGCAGGATGTGGAGGTCATCACTGTATCACCTTAACATGGGCAGATCGTANCAGCATATGGTGCGTCACCAATATGGCATTTTTCGAACTGNGGATACCCCATTTCCATTCACCAGCAGGTCATGTTTCTCATGATCTAGAATTTTCATCATTCAGTCCCCTGTCAATGCAGCAATGTTATTTGGGGATTGTACTGGCTTATTATTGGATTGCACTCCTCCTGGAAGTTCAGACGGCCTTGTAAGCAGATTGGATGCACTCAATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8328#0 TGGGAAGGTCACGGAGGAGCTACGCGCGGCTTCTTCTCCTAGGGTTCCTACTGCTACGGT 60 consensus_8328#1 ------------------------------CATGTAGTCTGGCGTTAGTATTTTTATTGA 30 * ** * *** ** * ** * consensus_8328#0 TCAGCTGGTGCTTGGCGGTGGCTGATGACGGCGGAGGCGCGGAGGAAGGGGGAGGGATTT 120 consensus_8328#1 TAGGCTGA-GTTTACTGATGGCCTCATGCTCCATGTAATCTTCTTATATTTGCTATAGTT 89 * **** * ** * **** * * * * * * ** consensus_8328#0 TTCCGGTGGTGGTGAGCACCTGGCCTTTCCGGGAGGCGGTCAGGGCGGCCTGGGAGGTGG 180 consensus_8328#1 ATCAGGTAGTAGAGAGCATGCGACGAGGGATGGAGCCTCGGGATGCTGCCATGGATGCTA 149 ** *** ** * ***** * * **** * ** *** *** * consensus_8328#0 TGTCAGCCAGTGGCGGCGCAGGTTGTTCGGCCGTGGATGCCGTCGTCGCCGGCTGCTCCG 240 consensus_8328#1 TATTAAGAATTGCC--CGCAAGT-ACCCGGACTTTGTTGGTGCTGTATTTG--CAATTAA 204 * * * * ** * **** ** *** * * * ** * ** * * consensus_8328#0 CCTGCGAGGTGCTCCGCTGTGATGGCACAGTTGGCCCAGGTGGAAGCCCAGATGAGAATG 300 consensus_8328#1 CAAGAAAGGAGTGC----ATGCTGGGGCA--TGCCACGGATGGACATTCCAGT------- 251 * * *** * * ** *** ** ** * * * **** * * consensus_8328#0 GTGAAACTACATTAGATGCTCTCATCATGGATGGGACCACAATGGAAATCGGAGCTGTCG 360 consensus_8328#1 -----ATTCTGTCAGGAATTCT-AGCATGCA--GGAT----GTGGAGGTCATCACTGT-A 298 * * * ** *** * **** * *** **** ** **** consensus_8328#0 CTGCCATGAGATATGTAAAGGATGGAATCAGA----GCGGCAA-AGTTGGTTATGGACCA 415 consensus_8328#1 TCACCTTAACATGGGCAGATCGTAACAGCATATGGTGCGTCACCAATATGGCATTTTTCG 358 ** * * ** * * * * * ** * *** ** * * * ** * consensus_8328#0 TACTGAACATACTC--TTCTTGTTGGAGAGAAGGCAACATCCTTTGCGATTTCAATGGGA 473 consensus_8328#1 AACTGGGGATACCCCATTTCCATTCACCAGCAGGTCATGTTTCTCATGATC----TAGAA 414 **** **** * ** ** ** *** * * * *** * * * consensus_8328#0 CTTGCGGGGCCAGCTGATCTG--AGCTCACCGGAGTCTATCGGAAAATGGACAATCTGGA 531 consensus_8328#1 TTTTCATCATTCAGTCCCCTGTCAATGCAGCAATGTTATTTGGGGATTGTACTGGCTTAT 474 ** * * *** * ** * ** * ** * ** ** ** consensus_8328#0 GACAGAACCATTGTCAACCTAACTTCTGGAAAAAT-GTTGTTCCTGCTGGTAGCTGTGGC 590 consensus_8328#1 TATTGGATTGCACTC-------CTCCTGGAAGTTCAGACGGCCTTGTAAGCAGATTGGAT 527 * * * ** ** ****** * * * ** * ** * * consensus_8328#0 CCGTACAATGCTATTGATGTACCATCAGGGGAGTGTAAGGCCTCTGCCAAACGTGTGCTA 650 consensus_8328#1 GCACTCAATTC------------------------------------------------- 538 * **** * consensus_8328#0 GAGCGGACTCAGGGGGACATTTGTCAAGGATTATTTGAACCTAATAATTTACTGGAGCCA 710 consensus_8328#1 ------------------------------------------------------------ consensus_8328#0 ATGAACTCCCGTCTAAAAATCGTTAATCGCCACAACCATGATACAATCTCTATGGCTGTG 770 consensus_8328#1 ------------------------------------------------------------ consensus_8328#0 ATTGACAAGATGGGTCGCATAGCGGCTGGCACATCGACCAATGGTGCTACATTCAAAATT 830 consensus_8328#1 ------------------------------------------------------------ consensus_8328#0 CCAGGAAGGGTAGGTGTTGGACCAATACCAGGATCTTCTGCATATGCTGATGATGAAGTT 890 consensus_8328#1 ------------------------------------------------------------ consensus_8328#0 GGTGCATGTGGAGCAACTGGTGATGGTGATATTATGATGCGCTTCCTTCCGTGTTATCAG 950 consensus_8328#1 ------------------------------------------------------------ consensus_8328#0 GTAGTAGAGAGCATGCGACGAGGGATGGAGCCTCGGGATGCTGCCATGGATGCTATATTA 1010 consensus_8328#1 ------------------------------------------------------------ consensus_8328#0 AGAATTGCCCGCAAGTACCCGGACTTTGNTGGTGCTGTATTTGCAATTAACAAGAAAGGA 1070 consensus_8328#1 ------------------------------------------------------------ consensus_8328#0 GTGCATGCTGGGGCATGCCACGGATGGACATTCCAGTATTCTGTCAGGGAATTCTAGCAT 1130 consensus_8328#1 ------------------------------------------------------------ consensus_8328#0 GCANGATGGNGGGAGGTCATCACTGTATCACCTTTAC 1167 consensus_8328#1 ------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||