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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8328#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1167 fasta sequence
[TGGGAAGGTCACGGAGGAGCTACGCGCGGCTTCTTCTCCTAGGGTTCCTACTGCTACGGTTCAGCTGGTGCTTGGCGGTGGCTGATGACGGCGGAGGCGCGGAGGAAGGGGGAGGGATTTTTCCGGTGGTGGTGAGCACCTGGCCTTTCCGGGAGGCGGTCAGGGCGGCCTGGGAGGTGGTGTCAGCCAGTGGCGGCGCAGGTTGTTCGGCCGTGGATGCCGTCGTCGCCGGCTGCTCCGCCTGCGAGGTGCTCCGCTGTGATGGCACAGTTGGCCCAGGTGGAAGCCCAGATGAGAATGGTGAAACTACATTAGATGCTCTCATCATGGATGGGACCACAATGGAAATCGGAGCTGTCGCTGCCATGAGATATGTAAAGGATGGAATCA-GAGCGGCAAAGTTGGTTATGGACCATACTGAACATACTCTTCTTGTTGGAGAGAAGGCAACATCCTTTGCGATTTCAATGGGACTTGCGGGGCCAGCTGATCTGAGCTCACCGGAGTCTATCGGAAAATGGACAATCTGGAGACAGAACCATTGTCAACCTAACTTCTGGAAAAATGTTGTTCCTGCTGGTAGCTGTGGCCCGTACAATGCTATTGATGTACCATCAGGGGAGTGTAAGGCCTCTGCCAAACGTGTGCTAGAGCGGACTCAGGGGGACATTTGTCAAGGATTATTTGAACCTAATAATTTACTGGAGCCAATGAACTCCCGTCTAAAAATCGTTAATCGCCACAACCATGATACAATCTCTATGGCTGTGATTGACAAGATGGGTCGCATAGCGGCTGGCACATCGACCAATGGTGCTACATTCAAAATTCCAGGAAGGGTAGGTGTTGGACCAATACCAGGATCTTCTGCATATGCTGATGATGAAGTTGGTGCATGTGGAGCAACTGGTGATGGTGATATTATGATGCGCTTCCTTCCGTGTTATCAGGTAGTAGAGAGCATGCGACGAGGGATGGAGCCTCGGGATGCTGCCATGGATGCTATATTAAGAATTGCCCGCAAGTACCCGGACTTTGNTGGTGCTGTATTTGCAATTAACAAGAAAGGAGTGCATGCTGGGGCATGCCACGGATGGACATTCCAGTATTCTGTCAGGGAATTCTAGCATGCANGATGGNGGGAGGTCATCACTGTATCACCTTTAC]
[+] EMBL AK063296 [TGGGAAGGTCACGGAGGAGCTACGCGCGGCTTCTTCTCCTAGGGTTCCTACTGCTACGGTTCAGCTGGTGCTTGGCGGTGGCTGATGACGGCGGAGGCGCGGAGGAAGGGGGAGGGATTTTTCCGGTGGTGGTGAGCACCTGGCCTTTCCGGGAGGCGGTCAGGGCGGCCTGGGAGGTGGTGTCAGCCAGTGGCGGCGCAGGTTGTTCGGCCGTGGATGCCGTCGTCGCCGGCTGCTCCGCCTGCGAGGTGCTCCGCTGTGATGGCACAGTTGGCCCAGGTGGAAGCCCAGATGAGAATGGTGAAACTACATTAGATGCTCTCATCATGGATGGGACCACAATGGAAATCGGAGCTGTCGCTGCCATGAGATATGTAAAGGATGGAATCA GAGCGGCAAAGTTGGTTATGGACCATACTGAACATACTCTTCTTGTTGGAGAGAAGGCAACATCCTTTGCGATTTCAATGGGACTTGTGGGGCCAGCTGATCTGAGCTCACCGGAGTCTATCGGAAAATGGACAATTTGGAGACAGAACCATTGTCAACCTAACTTCTGGAAAAATGTTGTTCCTGCTGGTAGCTGTGGCCCGTACAATGCTATTGATGTACCATCAGGGGAGTCTAAGGCCTCTGCCAAACGTGTGCTAGAGCGGACTCAGGGGGACATTTGTCAAGGATTATTTGAACCTAATAATTTACTGGAGCCAATGAACTCCCGTCTAAAAATCGTTAATCGCCACAACCATGATACAATCTCTATGGCTGTGATTGACAAGATGGGTCGCATAGCGGCTGGCACATCGACCAATGGTGCTACATTCAAAATTCCAG ]
[+] EMBL CA765747 [ GGATGGGACCACAATGGAAATCGGAGCTGTCGCTGCCATGAGATATGTAAAGGATGGAATCACGAGCGGCAAAGTTGGTTGTGGACCATACTGAACATACTCTTCTTGTTGGAGAGAAGGCAACATCCTTTGCGATTTCAATGGGACTTGCGGGGCCAGCTGATCTGAGCTCACCGGAGTCTATCGGAAAATGGACAATCTGGAGACAGAACCATTGTCAACCTAACTTCTGGAAAAATGTTGTTCCTGCTGGTAGCTGNGGCCCGTACAATGCTATTGATGTACCATCAGGGGAGTGTAAGGCCTCTGCCAAACGTGTGCTAGAGCGGACTCAGGGGGACATTTGTCAAGGATTATTTGAACCTAATAATTTACTGGAGCCAATGAACTCCCGTCTAAAAATCGTTAATCGCCACAACCATGATACAATCTCTATGGCTGTGATTGACAAGATGGGTCGCATAGCGGCTGGCACATCGACCAATGGTGCTACATTCAAAATTCCAG ]
[+] EMBL CB096766 [ aaggggTATGTAAAGGATGGAAT A GAGCGGCAAAGTTGGTTATGGACCCTACTGAACACACTCTTCTTGTTGGAGAGAAGGCAACATCCTTTGCGATTTCAATGGGACTTGCGGGGCCAGCTGATCTGAGCTCACCGGAGTCTATCGGAAAATGGACAATCTGGAGACAGAACCATTGTCAACCTAACTTCTGGAAAAATGTTGTTCCTGCTGGTAGCTGTGGCCCGTACAATGCTATTGATGTACCATCAGGGGAGTGTAAGGCCTCTGCCAAACGTGTGCTAGAGCGGACTCAGGGGGACATTTGTCAAGGATTATTTGAACCTAATAATTTACTGGAGCCAATGAACTCCCGTCTAAAAATCGTTAATCGCCACAACCATGATACAATCTCTATGGCTGTGATTGACAAGATGGGTCGCATAGCGGCTGGCACATCGACCAATGGTGCTACATTCAAAATTCCAGGAAGGGTAGGTGTTGGACCAATACCAGGATCTTCTGCATATGCTGATGATGAAGTTGGTGCATGTGGAGCAACTGGTGATGGTGATATTATGATGCGCTTCCTTCCGTGTTATCAGGTAGTAGAGAGCATGCGACGAGGGATGGAGCCTCGGGATGCTGCCATGGATGCTATATTAAGAATTGCCCGCAAGTACCCGGACTTTGNTGGTGCTGTATTTGCAATTAACAAGAAAGGAGTGCATGCTGGGGCATGCCACGGATGGACATTCCAGTATTCTGTCAGGGAATTCTAGCATGCANGATGGNGGGAGGTCATCACTGTATCACCTTTAC]
consensusID : consensus_8328#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 538 fasta sequence
[CATGTAGTCTGGCGTTAGTATTTTTATTGATAGGCTGAGTTTACTGATGGCCTCATGCTCCATGTAATCTTCTTATATTTGCTATAGTTATCAGGTAGTAGAGAGCATGCGACGAGGGATGGAGCCTCGGGATGCTGCCATGGATGCTATATTAAGAATTGCCCGCAAGTACCCGGACTTTGTTGGTGCTGTATTTGCAATTAACAAGAAAGGAGTGCATGCTGGGGCATGCCACGGATGGACATTCCAGTATTCTGTCAGGAATTCTAGCATGCAGGATGTGGAGGTCATCACTGTATCACCTTAACATGGGCAGATCGTAACAGCATATGGTGCGTCACCAATATGGCATTTTTCGAACTGGGGATACCCCATTTCCATTCACCAGCAGGTCATGTTTCTCATGATCTAGAATTTTCATCATTCAGTCCCCTGTCAATGCAGCAATGTTATTTGGGGATTGTACTGGCTTATTATTGGATTGCACTCCTCCTGGAAGTTCAGACGGCCTTGTAAGCAGATTGGATGCACTCAATTC]
[-] EMBL CB639074 [CATGTAGTCTGGCGTTAGTATTTTTATTGATAGGCTGAGTTTACTGATGGCCTCATGCTCCATGTAATCTTCTTATATTTGCTATAGTTATCAGGTAGTAGAGAGCATGCGACGAGGGATGGAGCCTCGGGATGCTGCCATGGATGCTATATTAAGAATTGCCCGCAAGTACCCGGACTTTGTTGGTGCTGTATTTGCAATTAACAAGAAAGGAGTGCATGCTGGGGCATGCCACGGATGGACATTCCAGTATTCTGTCAGGAATTCTAGCATGCAGGATGTGGAGGTCATCACTGTATCACCTTAACATGGGCAGATCGTAACAGCATATGGTGCGTCACCAATATGGCATTTTTCGAACTGGGGATACCCCATTTCCATTCACCAGCAGGTCATGTTTCTCATGATCTAGAATTTTCATCATTCAGTCCCCTGTCAATGCAGCAATGTTATTTGGGGATTGTACTGGCTTATTATTGGATTGCACTCCTCCTGGAAGTTCAGACGGCCTTGTAAGCAGATTGGATGCACTCAATTC]
[-] EMBL CB638987 [ ACGGATGGACATTCCAGTATTCTGTCAGGAATTCTAGCATGCAGGATGTGGAGGTCATCACTGTATCACCTTAACATGGGCAGATCGTANCAGCATATGGTGCGTCACCAATATGGCATTTTTCGAACTGNGGATACCCCATTTCCATTCACCAGCAGGTCATGTTTCTCATGATCTAGAATTTTCATCATTCAGTCCCCTGTCAATGCAGCAATGTTATTTGGGGATTGTACTGGCTTATTATTGGATTGCACTCCTCCTGGAAGTTCAGACGGCCTTGTAAGCAGATTGGATGCACTCAATTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8328#0 TGGGAAGGTCACGGAGGAGCTACGCGCGGCTTCTTCTCCTAGGGTTCCTACTGCTACGGT 60
consensus_8328#1 ------------------------------CATGTAGTCTGGCGTTAGTATTTTTATTGA 30
* ** * *** ** * ** *
consensus_8328#0 TCAGCTGGTGCTTGGCGGTGGCTGATGACGGCGGAGGCGCGGAGGAAGGGGGAGGGATTT 120
consensus_8328#1 TAGGCTGA-GTTTACTGATGGCCTCATGCTCCATGTAATCTTCTTATATTTGCTATAGTT 89
* **** * ** * **** * * * * * * **
consensus_8328#0 TTCCGGTGGTGGTGAGCACCTGGCCTTTCCGGGAGGCGGTCAGGGCGGCCTGGGAGGTGG 180
consensus_8328#1 ATCAGGTAGTAGAGAGCATGCGACGAGGGATGGAGCCTCGGGATGCTGCCATGGATGCTA 149
** *** ** * ***** * * **** * ** *** *** *
consensus_8328#0 TGTCAGCCAGTGGCGGCGCAGGTTGTTCGGCCGTGGATGCCGTCGTCGCCGGCTGCTCCG 240
consensus_8328#1 TATTAAGAATTGCC--CGCAAGT-ACCCGGACTTTGTTGGTGCTGTATTTG--CAATTAA 204
* * * * ** * **** ** *** * * * ** * ** * *
consensus_8328#0 CCTGCGAGGTGCTCCGCTGTGATGGCACAGTTGGCCCAGGTGGAAGCCCAGATGAGAATG 300
consensus_8328#1 CAAGAAAGGAGTGC----ATGCTGGGGCA--TGCCACGGATGGACATTCCAGT------- 251
* * *** * * ** *** ** ** * * * **** * *
consensus_8328#0 GTGAAACTACATTAGATGCTCTCATCATGGATGGGACCACAATGGAAATCGGAGCTGTCG 360
consensus_8328#1 -----ATTCTGTCAGGAATTCT-AGCATGCA--GGAT----GTGGAGGTCATCACTGT-A 298
* * * ** *** * **** * *** **** ** ****
consensus_8328#0 CTGCCATGAGATATGTAAAGGATGGAATCAGA----GCGGCAA-AGTTGGTTATGGACCA 415
consensus_8328#1 TCACCTTAACATGGGCAGATCGTAACAGCATATGGTGCGTCACCAATATGGCATTTTTCG 358
** * * ** * * * * * ** * *** ** * * * ** *
consensus_8328#0 TACTGAACATACTC--TTCTTGTTGGAGAGAAGGCAACATCCTTTGCGATTTCAATGGGA 473
consensus_8328#1 AACTGGGGATACCCCATTTCCATTCACCAGCAGGTCATGTTTCTCATGATC----TAGAA 414
**** **** * ** ** ** *** * * * *** * * *
consensus_8328#0 CTTGCGGGGCCAGCTGATCTG--AGCTCACCGGAGTCTATCGGAAAATGGACAATCTGGA 531
consensus_8328#1 TTTTCATCATTCAGTCCCCTGTCAATGCAGCAATGTTATTTGGGGATTGTACTGGCTTAT 474
** * * *** * ** * ** * ** * ** ** **
consensus_8328#0 GACAGAACCATTGTCAACCTAACTTCTGGAAAAAT-GTTGTTCCTGCTGGTAGCTGTGGC 590
consensus_8328#1 TATTGGATTGCACTC-------CTCCTGGAAGTTCAGACGGCCTTGTAAGCAGATTGGAT 527
* * * ** ** ****** * * * ** * ** * *
consensus_8328#0 CCGTACAATGCTATTGATGTACCATCAGGGGAGTGTAAGGCCTCTGCCAAACGTGTGCTA 650
consensus_8328#1 GCACTCAATTC------------------------------------------------- 538
* **** *
consensus_8328#0 GAGCGGACTCAGGGGGACATTTGTCAAGGATTATTTGAACCTAATAATTTACTGGAGCCA 710
consensus_8328#1 ------------------------------------------------------------
consensus_8328#0 ATGAACTCCCGTCTAAAAATCGTTAATCGCCACAACCATGATACAATCTCTATGGCTGTG 770
consensus_8328#1 ------------------------------------------------------------
consensus_8328#0 ATTGACAAGATGGGTCGCATAGCGGCTGGCACATCGACCAATGGTGCTACATTCAAAATT 830
consensus_8328#1 ------------------------------------------------------------
consensus_8328#0 CCAGGAAGGGTAGGTGTTGGACCAATACCAGGATCTTCTGCATATGCTGATGATGAAGTT 890
consensus_8328#1 ------------------------------------------------------------
consensus_8328#0 GGTGCATGTGGAGCAACTGGTGATGGTGATATTATGATGCGCTTCCTTCCGTGTTATCAG 950
consensus_8328#1 ------------------------------------------------------------
consensus_8328#0 GTAGTAGAGAGCATGCGACGAGGGATGGAGCCTCGGGATGCTGCCATGGATGCTATATTA 1010
consensus_8328#1 ------------------------------------------------------------
consensus_8328#0 AGAATTGCCCGCAAGTACCCGGACTTTGNTGGTGCTGTATTTGCAATTAACAAGAAAGGA 1070
consensus_8328#1 ------------------------------------------------------------
consensus_8328#0 GTGCATGCTGGGGCATGCCACGGATGGACATTCCAGTATTCTGTCAGGGAATTCTAGCAT 1130
consensus_8328#1 ------------------------------------------------------------
consensus_8328#0 GCANGATGGNGGGAGGTCATCACTGTATCACCTTTAC 1167
consensus_8328#1 -------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||