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Oryza sativa
cluster # 8328 cluster # 8328       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8328#0 length = 1167 sequences # 3  
consensus_8328#1 length = 538 sequences # 2  

consensusID : consensus_8328#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1167
fasta sequence
                              [TGGGAAGGTCACGGAGGAGCTACGCGCGGCTTCTTCTCCTAGGGTTCCTACTGCTACGGTTCAGCTGGTGCTTGGCGGTGGCTGATGACGGCGGAGGCGCGGAGGAAGGGGGAGGGATTTTTCCGGTGGTGGTGAGCACCTGGCCTTTCCGGGAGGCGGTCAGGGCGGCCTGGGAGGTGGTGTCAGCCAGTGGCGGCGCAGGTTGTTCGGCCGTGGATGCCGTCGTCGCCGGCTGCTCCGCCTGCGAGGTGCTCCGCTGTGATGGCACAGTTGGCCCAGGTGGAAGCCCAGATGAGAATGGTGAAACTACATTAGATGCTCTCATCATGGATGGGACCACAATGGAAATCGGAGCTGTCGCTGCCATGAGATATGTAAAGGATGGAATCA-GAGCGGCAAAGTTGGTTATGGACCATACTGAACATACTCTTCTTGTTGGAGAGAAGGCAACATCCTTTGCGATTTCAATGGGACTTGCGGGGCCAGCTGATCTGAGCTCACCGGAGTCTATCGGAAAATGGACAATCTGGAGACAGAACCATTGTCAACCTAACTTCTGGAAAAATGTTGTTCCTGCTGGTAGCTGTGGCCCGTACAATGCTATTGATGTACCATCAGGGGAGTGTAAGGCCTCTGCCAAACGTGTGCTAGAGCGGACTCAGGGGGACATTTGTCAAGGATTATTTGAACCTAATAATTTACTGGAGCCAATGAACTCCCGTCTAAAAATCGTTAATCGCCACAACCATGATACAATCTCTATGGCTGTGATTGACAAGATGGGTCGCATAGCGGCTGGCACATCGACCAATGGTGCTACATTCAAAATTCCAGGAAGGGTAGGTGTTGGACCAATACCAGGATCTTCTGCATATGCTGATGATGAAGTTGGTGCATGTGGAGCAACTGGTGATGGTGATATTATGATGCGCTTCCTTCCGTGTTATCAGGTAGTAGAGAGCATGCGACGAGGGATGGAGCCTCGGGATGCTGCCATGGATGCTATATTAAGAATTGCCCGCAAGTACCCGGACTTTGNTGGTGCTGTATTTGCAATTAACAAGAAAGGAGTGCATGCTGGGGCATGCCACGGATGGACATTCCAGTATTCTGTCAGGGAATTCTAGCATGCANGATGGNGGGAGGTCATCACTGTATCACCTTTAC]

[+] EMBL AK063296             [TGGGAAGGTCACGGAGGAGCTACGCGCGGCTTCTTCTCCTAGGGTTCCTACTGCTACGGTTCAGCTGGTGCTTGGCGGTGGCTGATGACGGCGGAGGCGCGGAGGAAGGGGGAGGGATTTTTCCGGTGGTGGTGAGCACCTGGCCTTTCCGGGAGGCGGTCAGGGCGGCCTGGGAGGTGGTGTCAGCCAGTGGCGGCGCAGGTTGTTCGGCCGTGGATGCCGTCGTCGCCGGCTGCTCCGCCTGCGAGGTGCTCCGCTGTGATGGCACAGTTGGCCCAGGTGGAAGCCCAGATGAGAATGGTGAAACTACATTAGATGCTCTCATCATGGATGGGACCACAATGGAAATCGGAGCTGTCGCTGCCATGAGATATGTAAAGGATGGAATCA GAGCGGCAAAGTTGGTTATGGACCATACTGAACATACTCTTCTTGTTGGAGAGAAGGCAACATCCTTTGCGATTTCAATGGGACTTGTGGGGCCAGCTGATCTGAGCTCACCGGAGTCTATCGGAAAATGGACAATTTGGAGACAGAACCATTGTCAACCTAACTTCTGGAAAAATGTTGTTCCTGCTGGTAGCTGTGGCCCGTACAATGCTATTGATGTACCATCAGGGGAGTCTAAGGCCTCTGCCAAACGTGTGCTAGAGCGGACTCAGGGGGACATTTGTCAAGGATTATTTGAACCTAATAATTTACTGGAGCCAATGAACTCCCGTCTAAAAATCGTTAATCGCCACAACCATGATACAATCTCTATGGCTGTGATTGACAAGATGGGTCGCATAGCGGCTGGCACATCGACCAATGGTGCTACATTCAAAATTCCAG                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CA765747             [                                                                                                                                                                                                                                                                                                                                        GGATGGGACCACAATGGAAATCGGAGCTGTCGCTGCCATGAGATATGTAAAGGATGGAATCACGAGCGGCAAAGTTGGTTGTGGACCATACTGAACATACTCTTCTTGTTGGAGAGAAGGCAACATCCTTTGCGATTTCAATGGGACTTGCGGGGCCAGCTGATCTGAGCTCACCGGAGTCTATCGGAAAATGGACAATCTGGAGACAGAACCATTGTCAACCTAACTTCTGGAAAAATGTTGTTCCTGCTGGTAGCTGNGGCCCGTACAATGCTATTGATGTACCATCAGGGGAGTGTAAGGCCTCTGCCAAACGTGTGCTAGAGCGGACTCAGGGGGACATTTGTCAAGGATTATTTGAACCTAATAATTTACTGGAGCCAATGAACTCCCGTCTAAAAATCGTTAATCGCCACAACCATGATACAATCTCTATGGCTGTGATTGACAAGATGGGTCGCATAGCGGCTGGCACATCGACCAATGGTGCTACATTCAAAATTCCAG                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB096766             [                                                                                                                                                                                                                                                                                                                                                                             aaggggTATGTAAAGGATGGAAT A GAGCGGCAAAGTTGGTTATGGACCCTACTGAACACACTCTTCTTGTTGGAGAGAAGGCAACATCCTTTGCGATTTCAATGGGACTTGCGGGGCCAGCTGATCTGAGCTCACCGGAGTCTATCGGAAAATGGACAATCTGGAGACAGAACCATTGTCAACCTAACTTCTGGAAAAATGTTGTTCCTGCTGGTAGCTGTGGCCCGTACAATGCTATTGATGTACCATCAGGGGAGTGTAAGGCCTCTGCCAAACGTGTGCTAGAGCGGACTCAGGGGGACATTTGTCAAGGATTATTTGAACCTAATAATTTACTGGAGCCAATGAACTCCCGTCTAAAAATCGTTAATCGCCACAACCATGATACAATCTCTATGGCTGTGATTGACAAGATGGGTCGCATAGCGGCTGGCACATCGACCAATGGTGCTACATTCAAAATTCCAGGAAGGGTAGGTGTTGGACCAATACCAGGATCTTCTGCATATGCTGATGATGAAGTTGGTGCATGTGGAGCAACTGGTGATGGTGATATTATGATGCGCTTCCTTCCGTGTTATCAGGTAGTAGAGAGCATGCGACGAGGGATGGAGCCTCGGGATGCTGCCATGGATGCTATATTAAGAATTGCCCGCAAGTACCCGGACTTTGNTGGTGCTGTATTTGCAATTAACAAGAAAGGAGTGCATGCTGGGGCATGCCACGGATGGACATTCCAGTATTCTGTCAGGGAATTCTAGCATGCANGATGGNGGGAGGTCATCACTGTATCACCTTTAC]


>consensus_8328#0 TGGGAAGGTCACGGAGGAGCTACGCGCGGCTTCTTCTCCTAGGGTTCCTACTGCTACGGT TCAGCTGGTGCTTGGCGGTGGCTGATGACGGCGGAGGCGCGGAGGAAGGGGGAGGGATTT TTCCGGTGGTGGTGAGCACCTGGCCTTTCCGGGAGGCGGTCAGGGCGGCCTGGGAGGTGG TGTCAGCCAGTGGCGGCGCAGGTTGTTCGGCCGTGGATGCCGTCGTCGCCGGCTGCTCCG CCTGCGAGGTGCTCCGCTGTGATGGCACAGTTGGCCCAGGTGGAAGCCCAGATGAGAATG GTGAAACTACATTAGATGCTCTCATCATGGATGGGACCACAATGGAAATCGGAGCTGTCG CTGCCATGAGATATGTAAAGGATGGAATCAGAGCGGCAAAGTTGGTTATGGACCATACTG AACATACTCTTCTTGTTGGAGAGAAGGCAACATCCTTTGCGATTTCAATGGGACTTGCGG GGCCAGCTGATCTGAGCTCACCGGAGTCTATCGGAAAATGGACAATCTGGAGACAGAACC ATTGTCAACCTAACTTCTGGAAAAATGTTGTTCCTGCTGGTAGCTGTGGCCCGTACAATG CTATTGATGTACCATCAGGGGAGTGTAAGGCCTCTGCCAAACGTGTGCTAGAGCGGACTC AGGGGGACATTTGTCAAGGATTATTTGAACCTAATAATTTACTGGAGCCAATGAACTCCC GTCTAAAAATCGTTAATCGCCACAACCATGATACAATCTCTATGGCTGTGATTGACAAGA TGGGTCGCATAGCGGCTGGCACATCGACCAATGGTGCTACATTCAAAATTCCAGGAAGGG TAGGTGTTGGACCAATACCAGGATCTTCTGCATATGCTGATGATGAAGTTGGTGCATGTG GAGCAACTGGTGATGGTGATATTATGATGCGCTTCCTTCCGTGTTATCAGGTAGTAGAGA GCATGCGACGAGGGATGGAGCCTCGGGATGCTGCCATGGATGCTATATTAAGAATTGCCC GCAAGTACCCGGACTTTGNTGGTGCTGTATTTGCAATTAACAAGAAAGGAGTGCATGCTG GGGCATGCCACGGATGGACATTCCAGTATTCTGTCAGGGAATTCTAGCATGCANGATGGN GGGAGGTCATCACTGTATCACCTTTAC



consensusID : consensus_8328#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 538
fasta sequence
                              [CATGTAGTCTGGCGTTAGTATTTTTATTGATAGGCTGAGTTTACTGATGGCCTCATGCTCCATGTAATCTTCTTATATTTGCTATAGTTATCAGGTAGTAGAGAGCATGCGACGAGGGATGGAGCCTCGGGATGCTGCCATGGATGCTATATTAAGAATTGCCCGCAAGTACCCGGACTTTGTTGGTGCTGTATTTGCAATTAACAAGAAAGGAGTGCATGCTGGGGCATGCCACGGATGGACATTCCAGTATTCTGTCAGGAATTCTAGCATGCAGGATGTGGAGGTCATCACTGTATCACCTTAACATGGGCAGATCGTAACAGCATATGGTGCGTCACCAATATGGCATTTTTCGAACTGGGGATACCCCATTTCCATTCACCAGCAGGTCATGTTTCTCATGATCTAGAATTTTCATCATTCAGTCCCCTGTCAATGCAGCAATGTTATTTGGGGATTGTACTGGCTTATTATTGGATTGCACTCCTCCTGGAAGTTCAGACGGCCTTGTAAGCAGATTGGATGCACTCAATTC]

[-] EMBL CB639074             [CATGTAGTCTGGCGTTAGTATTTTTATTGATAGGCTGAGTTTACTGATGGCCTCATGCTCCATGTAATCTTCTTATATTTGCTATAGTTATCAGGTAGTAGAGAGCATGCGACGAGGGATGGAGCCTCGGGATGCTGCCATGGATGCTATATTAAGAATTGCCCGCAAGTACCCGGACTTTGTTGGTGCTGTATTTGCAATTAACAAGAAAGGAGTGCATGCTGGGGCATGCCACGGATGGACATTCCAGTATTCTGTCAGGAATTCTAGCATGCAGGATGTGGAGGTCATCACTGTATCACCTTAACATGGGCAGATCGTAACAGCATATGGTGCGTCACCAATATGGCATTTTTCGAACTGGGGATACCCCATTTCCATTCACCAGCAGGTCATGTTTCTCATGATCTAGAATTTTCATCATTCAGTCCCCTGTCAATGCAGCAATGTTATTTGGGGATTGTACTGGCTTATTATTGGATTGCACTCCTCCTGGAAGTTCAGACGGCCTTGTAAGCAGATTGGATGCACTCAATTC]
[-] EMBL CB638987             [                                                                                                                                                                                                                                         ACGGATGGACATTCCAGTATTCTGTCAGGAATTCTAGCATGCAGGATGTGGAGGTCATCACTGTATCACCTTAACATGGGCAGATCGTANCAGCATATGGTGCGTCACCAATATGGCATTTTTCGAACTGNGGATACCCCATTTCCATTCACCAGCAGGTCATGTTTCTCATGATCTAGAATTTTCATCATTCAGTCCCCTGTCAATGCAGCAATGTTATTTGGGGATTGTACTGGCTTATTATTGGATTGCACTCCTCCTGGAAGTTCAGACGGCCTTGTAAGCAGATTGGATGCACTCAATTC]


>consensus_8328#1 CATGTAGTCTGGCGTTAGTATTTTTATTGATAGGCTGAGTTTACTGATGGCCTCATGCTC CATGTAATCTTCTTATATTTGCTATAGTTATCAGGTAGTAGAGAGCATGCGACGAGGGAT GGAGCCTCGGGATGCTGCCATGGATGCTATATTAAGAATTGCCCGCAAGTACCCGGACTT TGTTGGTGCTGTATTTGCAATTAACAAGAAAGGAGTGCATGCTGGGGCATGCCACGGATG GACATTCCAGTATTCTGTCAGGAATTCTAGCATGCAGGATGTGGAGGTCATCACTGTATC ACCTTAACATGGGCAGATCGTAACAGCATATGGTGCGTCACCAATATGGCATTTTTCGAA CTGGGGATACCCCATTTCCATTCACCAGCAGGTCATGTTTCTCATGATCTAGAATTTTCA TCATTCAGTCCCCTGTCAATGCAGCAATGTTATTTGGGGATTGTACTGGCTTATTATTGG ATTGCACTCCTCCTGGAAGTTCAGACGGCCTTGTAAGCAGATTGGATGCACTCAATTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8328#0      TGGGAAGGTCACGGAGGAGCTACGCGCGGCTTCTTCTCCTAGGGTTCCTACTGCTACGGT 60
consensus_8328#1      ------------------------------CATGTAGTCTGGCGTTAGTATTTTTATTGA 30
                                                        *   ** * ***  ** *  **  * 

consensus_8328#0      TCAGCTGGTGCTTGGCGGTGGCTGATGACGGCGGAGGCGCGGAGGAAGGGGGAGGGATTT 120
consensus_8328#1      TAGGCTGA-GTTTACTGATGGCCTCATGCTCCATGTAATCTTCTTATATTTGCTATAGTT 89
                      *  ****  * **   * ****      *  *       *     *     *    * **

consensus_8328#0      TTCCGGTGGTGGTGAGCACCTGGCCTTTCCGGGAGGCGGTCAGGGCGGCCTGGGAGGTGG 180
consensus_8328#1      ATCAGGTAGTAGAGAGCATGCGACGAGGGATGGAGCCTCGGGATGCTGCCATGGATGCTA 149
                       ** *** ** * *****   * *       **** *       ** ***  *** *   

consensus_8328#0      TGTCAGCCAGTGGCGGCGCAGGTTGTTCGGCCGTGGATGCCGTCGTCGCCGGCTGCTCCG 240
consensus_8328#1      TATTAAGAATTGCC--CGCAAGT-ACCCGGACTTTGTTGGTGCTGTATTTG--CAATTAA 204
                      * * *   * ** *  **** **    *** * * * **  *  **    *     *   

consensus_8328#0      CCTGCGAGGTGCTCCGCTGTGATGGCACAGTTGGCCCAGGTGGAAGCCCAGATGAGAATG 300
consensus_8328#1      CAAGAAAGGAGTGC----ATGCTGGGGCA--TGCCACGGATGGACATTCCAGT------- 251
                      *  *  *** *  *     ** ***  **  ** * * * ****    *   *       

consensus_8328#0      GTGAAACTACATTAGATGCTCTCATCATGGATGGGACCACAATGGAAATCGGAGCTGTCG 360
consensus_8328#1      -----ATTCTGTCAGGAATTCT-AGCATGCA--GGAT----GTGGAGGTCATCACTGT-A 298
                           * *   * **    *** * **** *  ***      ****  **    ****  

consensus_8328#0      CTGCCATGAGATATGTAAAGGATGGAATCAGA----GCGGCAA-AGTTGGTTATGGACCA 415
consensus_8328#1      TCACCTTAACATGGGCAGATCGTAACAGCATATGGTGCGTCACCAATATGGCATTTTTCG 358
                         ** * * **  * * *   *   * ** *    *** **  * *  *  **    * 

consensus_8328#0      TACTGAACATACTC--TTCTTGTTGGAGAGAAGGCAACATCCTTTGCGATTTCAATGGGA 473
consensus_8328#1      AACTGGGGATACCCCATTTCCATTCACCAGCAGGTCATGTTTCTCATGATC----TAGAA 414
                       ****   **** *  **    **    ** ***  *  *   *   ***     * * *

consensus_8328#0      CTTGCGGGGCCAGCTGATCTG--AGCTCACCGGAGTCTATCGGAAAATGGACAATCTGGA 531
consensus_8328#1      TTTTCATCATTCAGTCCCCTGTCAATGCAGCAATGTTATTTGGGGATTGTACTGGCTTAT 474
                       ** *         *   ***  *   ** *   **   * **  * ** **   **   

consensus_8328#0      GACAGAACCATTGTCAACCTAACTTCTGGAAAAAT-GTTGTTCCTGCTGGTAGCTGTGGC 590
consensus_8328#1      TATTGGATTGCACTC-------CTCCTGGAAGTTCAGACGGCCTTGTAAGCAGATTGGAT 527
                       *  * *      **       ** ******     *  *  * **   * ** *  *  

consensus_8328#0      CCGTACAATGCTATTGATGTACCATCAGGGGAGTGTAAGGCCTCTGCCAAACGTGTGCTA 650
consensus_8328#1      GCACTCAATTC------------------------------------------------- 538
                       *   **** *                                                 

consensus_8328#0      GAGCGGACTCAGGGGGACATTTGTCAAGGATTATTTGAACCTAATAATTTACTGGAGCCA 710
consensus_8328#1      ------------------------------------------------------------
                                                                                  

consensus_8328#0      ATGAACTCCCGTCTAAAAATCGTTAATCGCCACAACCATGATACAATCTCTATGGCTGTG 770
consensus_8328#1      ------------------------------------------------------------
                                                                                  

consensus_8328#0      ATTGACAAGATGGGTCGCATAGCGGCTGGCACATCGACCAATGGTGCTACATTCAAAATT 830
consensus_8328#1      ------------------------------------------------------------
                                                                                  

consensus_8328#0      CCAGGAAGGGTAGGTGTTGGACCAATACCAGGATCTTCTGCATATGCTGATGATGAAGTT 890
consensus_8328#1      ------------------------------------------------------------
                                                                                  

consensus_8328#0      GGTGCATGTGGAGCAACTGGTGATGGTGATATTATGATGCGCTTCCTTCCGTGTTATCAG 950
consensus_8328#1      ------------------------------------------------------------
                                                                                  

consensus_8328#0      GTAGTAGAGAGCATGCGACGAGGGATGGAGCCTCGGGATGCTGCCATGGATGCTATATTA 1010
consensus_8328#1      ------------------------------------------------------------
                                                                                  

consensus_8328#0      AGAATTGCCCGCAAGTACCCGGACTTTGNTGGTGCTGTATTTGCAATTAACAAGAAAGGA 1070
consensus_8328#1      ------------------------------------------------------------
                                                                                  

consensus_8328#0      GTGCATGCTGGGGCATGCCACGGATGGACATTCCAGTATTCTGTCAGGGAATTCTAGCAT 1130
consensus_8328#1      ------------------------------------------------------------
                                                                                  

consensus_8328#0      GCANGATGGNGGGAGGTCATCACTGTATCACCTTTAC 1167
consensus_8328#1      -------------------------------------
                                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)