cluster # 833

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 833 cluster # 833 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_833#0 length = 908 sequences # 1

consensus_833#1 length = 603 sequences # 1

consensusID : consensus_833#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 908
fasta sequence

                              [ACAAGGGGAAGGGGCGACTCGTGGGGCGGCGTCGCCCGACGAATCCAACGGCGGCGACTCGCTTTGCGAGGCGGCAGGTCTGATTCGCACCGGTGGATGGCAGCTCGGCGACGAGGTGCAGTGGCTGGGCTCTACGGCAGTGACCCACCTCCTCGTCGACCTTGGGCCTCCCTGTCGCCGGCGATGGAGGATGGGCACGCCGGTGATTTTGATTTTTATTTTTTCAAAATCTGGATTCCAATTTTCTTCTTTTTTAATCTAAAAATATTTTCACTGGCGGGTGTTTTATCTTCCGACAGCGAAAACCGAAATTTGTGCTAGCGGTTGTCTTAGCCAGCCGCCAGTGAAGACAATTTTCGCCCGGCCGCCAGCAAAAATCGATCTTCTCTAGCGGTTTGTCGCTGTTAGCGTAGATGCTACATCTTAACTAGCCTTTACTTTGTGGCGGCTCCGATATCCGCCAGCAAAACCTAAAATGGCCGCCACGAAAGATTGTTTTCGTAGTAGTGTAGAATACAATCTAATGATCCATCGCCTGCTGGGCTATAAGTTATCTATTCGCCTCTTCACTTCTCTTTCAGCAAGCATACTTATATGGTGAAGAAATGAGACGGTGGAGTTATAGATTCAGCAAGGAAAAAAAAGGATTCAAGAGACAGCCATACTCATAATTTCCATAATAGGAGGCTCTTGGTTTAGCCACGACGTACATCATACTCTGCTTCGTCTTCACTNCACTTTCACGATCCTCACCGGGCTATTTGGTCATNCACCACAGCAGAGCATACCCTTTGATCCNTTTCGGGTTTTGAAAAATAAAGGGTATTCATGCNTATNAAGTAAGGGGGATGATTATGGGATGCTTACACTAAAAAATTTGNAAGGACTGGGTGCCTTGGCCGGGGTAT]

[+] EMBL CA764460             [ACAAGGGGAAGGGGCGACTCGTGGGGCGGCGTCGCCCGACGAATCCAACGGCGGCGACTCGCTTTGCGAGGCGGCAGGTCTGATTCGCACCGGTGGATGGCAGCTCGGCGACGAGGTGCAGTGGCTGGGCTCTACGGCAGTGACCCACCTCCTCGTCGACCTTGGGCCTCCCTGTCGCCGGCGATGGAGGATGGGCACGCCGGTGATTTTGATTTTTATTTTTTCAAAATCTGGATTCCAATTTTCTTCTTTTTTAATCTAAAAATATTTTCACTGGCGGGTGTTTTATCTTCCGACAGCGAAAACCGAAATTTGTGCTAGCGGTTGTCTTAGCCAGCCGCCAGTGAAGACAATTTTCGCCCGGCCGCCAGCAAAAATCGATCTTCTCTAGCGGTTTGTCGCTGTTAGCGTAGATGCTACATCTTAACTAGCCTTTACTTTGTGGCGGCTCCGATATCCGCCAGCAAAACCTAAAATGGCCGCCACGAAAGATTGTTTTCGTAGTAGTGTAGAATACAATCTAATGATCCATCGCCTGCTGGGCTATAAGTTATCTATTCGCCTCTTCACTTCTCTTTCAGCAAGCATACTTATATGGTGAAGAAATGAGACGGTGGAGTTATAGATTCAGCAAGGAAAAAAAAGGATTCAAGAGACAGCCATACTCATAATTTCCATAATAGGAGGCTCTTGGTTTAGCCACGACGTACATCATACTCTGCTTCGTCTTCACTNCACTTTCACGATCCTCACCGGGCTATTTGGTCATNCACCACAGCAGAGCATACCCTTTGATCCNTTTCGGGTTTTGAAAAATAAAGGGTATTCATGCNTATNAAGTAAGGGGGATGATTATGGGATGCTTACACTAAAAAATTTGNAAGGACTGGGTGCCTTGGCCGGGGTAT]




>consensus_833#0
ACAAGGGGAAGGGGCGACTCGTGGGGCGGCGTCGCCCGACGAATCCAACGGCGGCGACTC
GCTTTGCGAGGCGGCAGGTCTGATTCGCACCGGTGGATGGCAGCTCGGCGACGAGGTGCA
GTGGCTGGGCTCTACGGCAGTGACCCACCTCCTCGTCGACCTTGGGCCTCCCTGTCGCCG
GCGATGGAGGATGGGCACGCCGGTGATTTTGATTTTTATTTTTTCAAAATCTGGATTCCA
ATTTTCTTCTTTTTTAATCTAAAAATATTTTCACTGGCGGGTGTTTTATCTTCCGACAGC
GAAAACCGAAATTTGTGCTAGCGGTTGTCTTAGCCAGCCGCCAGTGAAGACAATTTTCGC
CCGGCCGCCAGCAAAAATCGATCTTCTCTAGCGGTTTGTCGCTGTTAGCGTAGATGCTAC
ATCTTAACTAGCCTTTACTTTGTGGCGGCTCCGATATCCGCCAGCAAAACCTAAAATGGC
CGCCACGAAAGATTGTTTTCGTAGTAGTGTAGAATACAATCTAATGATCCATCGCCTGCT
GGGCTATAAGTTATCTATTCGCCTCTTCACTTCTCTTTCAGCAAGCATACTTATATGGTG
AAGAAATGAGACGGTGGAGTTATAGATTCAGCAAGGAAAAAAAAGGATTCAAGAGACAGC
CATACTCATAATTTCCATAATAGGAGGCTCTTGGTTTAGCCACGACGTACATCATACTCT
GCTTCGTCTTCACTNCACTTTCACGATCCTCACCGGGCTATTTGGTCATNCACCACAGCA
GAGCATACCCTTTGATCCNTTTCGGGTTTTGAAAAATAAAGGGTATTCATGCNTATNAAG
TAAGGGGGATGATTATGGGATGCTTACACTAAAAAATTTGNAAGGACTGGGTGCCTTGGC
CGGGGTAT

consensusID : consensus_833#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 603
fasta sequence

                              [CCCACCGTTCTCCCTCCTTTCTCTGCCTCTCCATCCAGCCGCCAGCGACGACNAAGCTCGTGGCGCGCGCATCGGTCGACGGGCGGAGCACTGGCGGCTTGGTTGACGGGCGGAGCACCGGCGACTCGCGGGGCGGCGGATCCGGCGGAGGCGACTCGCGGGGCGGCGGATCCGGCGGCGACGACTCACGGGGCGGTGGATCCGGCGGAGGCGACTCGCGGGGCGGCAGATCCAACGGCGGCGACTCGCGGGGGGGCGTCGCCCAGCGGCGGCGACTCGCGGGGCGGCGCGGTGCGGCGAGTCCGGCGACGGTGACAAGGAGAAGGGGCGACTCGTGGGGCGGCGTCGCCCGACGAATCCAACGGCGGCGACTCGCTTTGCGAGGCGGCAGGTCTGATTCGCACCGGTGGATGGCAGCTCGGCGACGAGGTGCAGTGGCTGGGCTCTACGGCAGTGACCCACCTCCTCGTCGACCTTGAGCCTCCCTGTCGCCGGCGATGGAGGATGGGCACGCCGGTGATTTTGATTTTTATTTTTTCAAATCTGGATTCCAATTTTCTTCTGTTTTTAATCTAAAAATATTTTCAAAAAAGTCGAACGTAT]

[+] EMBL CA754973             [CCCACCGTTCTCCCTCCTTTCTCTGCCTCTCCATCCAGCCGCCAGCGACGACNAAGCTCGTGGCGCGCGCATCGGTCGACGGGCGGAGCACTGGCGGCTTGGTTGACGGGCGGAGCACCGGCGACTCGCGGGGCGGCGGATCCGGCGGAGGCGACTCGCGGGGCGGCGGATCCGGCGGCGACGACTCACGGGGCGGTGGATCCGGCGGAGGCGACTCGCGGGGCGGCAGATCCAACGGCGGCGACTCGCGGGGGGGCGTCGCCCAGCGGCGGCGACTCGCGGGGCGGCGCGGTGCGGCGAGTCCGGCGACGGTGACAAGGAGAAGGGGCGACTCGTGGGGCGGCGTCGCCCGACGAATCCAACGGCGGCGACTCGCTTTGCGAGGCGGCAGGTCTGATTCGCACCGGTGGATGGCAGCTCGGCGACGAGGTGCAGTGGCTGGGCTCTACGGCAGTGACCCACCTCCTCGTCGACCTTGAGCCTCCCTGTCGCCGGCGATGGAGGATGGGCACGCCGGTGATTTTGATTTTTATTTTTTCAAATCTGGATTCCAATTTTCTTCTGTTTTTAATCTAAAAATATTTTCAAAAAAGTCGAACGTAT]




>consensus_833#1
CCCACCGTTCTCCCTCCTTTCTCTGCCTCTCCATCCAGCCGCCAGCGACGACNAAGCTCG
TGGCGCGCGCATCGGTCGACGGGCGGAGCACTGGCGGCTTGGTTGACGGGCGGAGCACCG
GCGACTCGCGGGGCGGCGGATCCGGCGGAGGCGACTCGCGGGGCGGCGGATCCGGCGGCG
ACGACTCACGGGGCGGTGGATCCGGCGGAGGCGACTCGCGGGGCGGCAGATCCAACGGCG
GCGACTCGCGGGGGGGCGTCGCCCAGCGGCGGCGACTCGCGGGGCGGCGCGGTGCGGCGA
GTCCGGCGACGGTGACAAGGAGAAGGGGCGACTCGTGGGGCGGCGTCGCCCGACGAATCC
AACGGCGGCGACTCGCTTTGCGAGGCGGCAGGTCTGATTCGCACCGGTGGATGGCAGCTC
GGCGACGAGGTGCAGTGGCTGGGCTCTACGGCAGTGACCCACCTCCTCGTCGACCTTGAG
CCTCCCTGTCGCCGGCGATGGAGGATGGGCACGCCGGTGATTTTGATTTTTATTTTTTCA
AATCTGGATTCCAATTTTCTTCTGTTTTTAATCTAAAAATATTTTCAAAAAAGTCGAACG
TAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_833#0      ACAAGGGGAAGGGGCGACTCGTGGGGCGGCGTCGCCCGACGAATCCAACGGCGGCGACTC 60
consensus_833#1      ------------------------------------------------------------
                                                                                 

consensus_833#0      GCTTTGCGAGGCGGCAGGTCTGATTCGCACCGGTGGATGGCAGCTCGGCGACGAGGTGCA 120
consensus_833#1      ------------------------------------------------------------
                                                                                 

consensus_833#0      GTGGCTGGGCTCTACGGCAGTGACCCACCTCCTCGTCGACCTTGGGCCTCCCTGTCGCCG 180
consensus_833#1      ------------------------------------------------------------
                                                                                 

consensus_833#0      GCGATGGAGGATGGGCACGCCGGTGATTTTGATTTTTATTTTTTCAAAATCTGGATTCCA 240
consensus_833#1      ------------------------------------------------------------
                                                                                 

consensus_833#0      ATTTTCTTCTTTTTTAATCTAAAAATATTTTCACTGGCGGGTGTTTTATCTTCCGACAGC 300
consensus_833#1      ------------------CCCACCGTTCTCCCTCCTTTCTCTGCCTCTCCATCCAGCCGC 42
                                       *  *   *  *  * *       **  *   * ***  * **

consensus_833#0      GAAAACCGAAATTTGTGCTAGCGGTTGTCTTAGCCAGCCGCCAGTGAAGACAATTTTCGC 360
consensus_833#1      CAG---CGACGACNAAGCTCGTGGCGCGCGCA-TCGGTCGACGGGCGGAGCACTGGCGGC 98
                      *    ***       *** * **    *  *  * * ** * *      ** *    **

consensus_833#0      CCGGCCGCCAGCAAAAATCGATCTTCTCTAGCGGTTTGTCGCTGTTAGCGTAGATGCTAC 420
consensus_833#1      TTGGTTGACGG-GCGGAGCACCGGCGACTCGCGGGGCGGCGGATCCGGCGGAGGCG--AC 155
                       **  * * *     * *        ** ****   * **      *** **  *  **

consensus_833#0      ATCTTAACTAGCCTTTACTTTGTGGCGGCTCCGATATCCGCCAGCAAAACCTAAAATGGC 480
consensus_833#1      TCGCGGGGCGGCG--GATCCGGCGGCGACGACT-CACGGGGCGGTGGATCCGGCGGAGGC 212
                               **    *    * **** *  *   *   * * *   * **      ***

consensus_833#0      CGCCACGAAAGATTGTTTTCGTAGTAGTGTAGAATACAATCTAATGATCCATCGCCTGCT 540
consensus_833#1      -GACTCGCGGGGCGGCAGATCCAACGGCGGCGACT----CGCGGGGGGGCGTCGCCCAGC 267
                      * * **   *   *       *   * *  ** *          *   * *****    

consensus_833#0      GGGCTATAAGTTATCTATTCGCCTCTTCACTTCTCTTTCAGCAAGCATACTTATATGGTG 600
consensus_833#1      GG-CGGCGACTCG-CGGGGCGGCGCGGTGCGGCGAGTCCGGCGACGGTGACAAGGAGAAG 325
                     ** *    * *   *    ** * *    *  *   * * ** *   *    *   *  *

consensus_833#0      AAGAAA----TGAGACGGTGGAGTT--ATAGATTCAGCAAGGAAAAAAAAGGATTCAAGA 654
consensus_833#1      GGGCGACTCGTGGGGCGGCGTCGCCCGACGAATCCAAC--GGCGGCGACTCGCTTTGCGA 383
                       *  *    ** * *** *  *    *   ** ** *  **     *   * **   **

consensus_833#0      GACAGCCATACTCATAATTTCCATAATAGGAGGCTCTTGGTTTAGCCACGACGTACATCA 714
consensus_833#1      GGCGGCAGGTCT---GATTCGCAC---CGGTGGATGGCAGCTCGGCGACGAGGTGCAGTG 437
                     * * **    **    ***  **     ** ** *    * *  ** **** ** **   

consensus_833#0      TACTCTGCTT--CGTCTTCACTNCACTTTCACGATCCTCACCGGGCTATTTGGTCATNCA 772
consensus_833#1      -GCTGGGCTCTACGGCAGTGACCCACCTCCTCG-TCGACCTTGAGCCTCCCTGTCGCCGG 495
                       **  ***   ** *       *** * * ** **  *   * **      ***     

consensus_833#0      CCACAGCAGAGCATACCCTTTGATCCNTTTCGGGTTTTGAAAAATAAAGGGTATTCATGC 832
consensus_833#1      CGATGG-AGGATGGGCACGCCGGTG-ATTTTGATTTTTATTTTTTCAA--ATCTGGATTC 551
                     * *  * **      * *   * *   *** *  ****      * **   * *  ** *

consensus_833#0      NTATNAAGTAAGGGGGATGATTATGGGATGCTTACACTAAAAAATTTGNAAGGACTGGGT 892
consensus_833#1      CAATTTTCTTCTGTTTTTAATCTAAAAATATTTTCA---AAAAAGTCGAACGTAT----- 603
                       **    *   *    * **      **  ** **   ***** * * * * *      

consensus_833#0      GCCTTGGCCGGGGTAT 908
consensus_833#1      ----------------