These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8331#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 812 fasta sequence [CCTTCCTCCTTGGCGCTCATCCACCACCACCTCCTCCAAGAGCCACCAAACGGCAGCAGGATGGCCGCTGTGATGAAAGCTCTCGCCGTCGCCTCGCCGATCTCGGCACGAGCACAGCCCCGACGATGCCCCGCAGGTTCGTCATGCGGCCCTAGCCAAAGCCTGCATTCATCGTTCGGCGGCGTCTCCCTGCTGTGCCGGCGCACGAAGCCGGCGTCCCTCCACCGGAGTCGGCCGTCGATGCAGGTGGTGATGATGGCGGCGAGGCCGGCGATCCAGTTCATCCAGGGCACCGACGAGCAGACGATCCCGGACGTGCGGCTGACCAAGTCCCGGGACGGCACCAACGGCGTGGCCATCTTCACCTTCGACCAGCCGTCGGTGTTCGACTCGTCGGCAGAGCTCGGCGACATCA-CCGGCTTCTACATGATCGACGACGAGGGCGTGCTCCAGTCGGTGGACGTCAGCGCCAAGTTCGTCAACGGCAAGCCGGCGCTCATCGAGGCCAAGTACGTCATGCGCACGCCGCGGGAGTGGGACAGGTTCATGCGATTCATGGAGAGGTACTCCCAGGCCAACGGCCTCCAGTTCGTCAAGAAGTGATCGCCTTTTTTTTTCTCCTTTTTTCCCCCTCACACTGCCTTGAGCATGTACTGTGTGCTCTTTCAGTGTAAATACCTATGAATTCTGATCATCATAAGCTCGATACATGATGAGTTGTTTGGTGTGTGCATTGATTGCGTTTCTTCTATGAGTGCAATTTTGTATTCGTAAATACCCCTATAAGCATTTCAGAGATTAATATGGAGTGG] [+] EMBL CF293210 [CCTTCCTCCTTGGCGCTCATCCACCACCACCTCCTCCAAGAGCCACCAAACGGCAGCAGGATGGCCGCTGTGATGAAAGCTCTCGCCGTCGCCTCGCCGATCTCGGCACGAGCACAGCCCCGACGATGCCCCGCAGGTTCGTCATGCGGCCCTAGCCAAAGCCTGCATTCATCGTTCGGCGGCGTCTCCCTGCTGTGCCGGCGCACGAAGCCGGCGTCCCTCCACCGGAGTCGGCCGTCGATGCAGGTGGTGATGATGGCGGCGAGGCCGGCGATCCAGTTCATCCAGGGCACCGACGAGCAGACGATCCCGGACGTGCGGCTGACCAAGTCCCGGGACGGCACCAACGGCGTGGCCATCTTCACCTTCGACCAGCCGTCGGTGTTCGACTCGTCGGCAGAGCTCGGCGACATCA CCGGCTTCTACATGATCGACGACGAGGGCGTGCTCCAGTCGGTGGACGTCAGCGCCAAGTTCGTCAACGGCAAGCCGGCGCTCATCGAGGCCAAGTACGTCATGCGCACGCCGCGGGAGTGGGACAGGTTCATG ] [+] EMBL CB680541 [ ACCAAACCGTAGCAGGATGGCCGCTGTGATGAAAGCTCTCGCCGTCGCCTCGCCGATCTCGGCACGAGCACAGCCCCGACGATGCCCCGCAGGTTCGTCAGGCGGCCCTAGCCAAAGCCTGCATTCATCGTTCGGCGGCGTCTCCCTGCAGTGCCGGCGCACGAAGCCGGCGTCCCTCCACCGGAGTCGGCCGTCGATGCGGGTGGTGATGATGGCGGCGAGGCCGGCGATCCAGTTCATCCAGGGCACCGACGAGCAGACGATCCCGGACGTGCGGCTGACCAAGTCCCGGGACGGCACCAACGGCGTGGCCATCTTCACCTTCGACCAGCCGGCGGTGTTCGACTCGTCGGCAGAGCTCGGCGACATCA CCGGCTTCTACATGATCGACGACGAGGGCGTGCTCCAGTCGGTGGACGTCAGCGCCAAGTTCGTCAACGGCAAGCCGGCGCTCATCGAGGCCAAGTACGTCATGCGCACGCCGCGGGAGTGGGACAGGTTCATGCGATTCATGGAGAGGTACTCCCAGGCCAACGGCCTCCAGTTCGTCAAGAAGTGATCGCCTTTTTTTTTCTCCTTTTTTCCCCCTCACACTGCCTTGAGCATGTACTGTGTGCTCTTTCAGTGTAAATACCTATGAATTCTGATCATCATAAGCTCGATACATGATGAGTTGTTTGGTGTGTGCATTGATTGCGTTTCTTCTATGAGTGCAATTTTGTATTCGTAAATACCCCTATAAGCATTTCAGAGATTAATATGGAGTGG] [+] EMBL AF366557 [ GTGCGGCTGACAAAGTCCGGGGACGGCACAAAGGGCGTGGCCATCTTCACCTTCGACCAGCCGTCGGTGTTCGACTCGTCGGCGAAGCTGGGCGACATCA CCGGCTTCTACATGATCGACGACGAGGGCGTGCTCCAGTCGGTGGACGTCAGCGCCAAGTTCGTCAACGGCAAGCCGGCGCTCATCGAGGCCAAGTACGTCATGCGCACGCCGCGGGAGTGGGACAGGTTCATGCGATTCATGGAGAGGTACTCCCAGGCCAACGTCCTCCAGTT ] [-] EMBL CF293209 [ CGTCGGTGTTCGACTCGTCGGCAGAGCTCGGCGACATCACCCGGCTTCTACATGATCGACGACGAGGGCGTGCTCCAGTCGGTGGACGTCAGCGCCAAGTTCGTCAACGGCAAGCCGGCGCTCATCGAGGCCAAGTACGTCATGCGCACGCCGCGGGAGTGGGACAGGTTCATGCGATTCATGGAGAGGTACTCCCAGGCCAACGGCCTCCAGTTCGTCAAGAAGTGATCGCCTTTTTTTTTCTCCTTTTTTCCCCCTCACACTGCCTTGAGCATGTACTGTGTGCTCTTTCAGTGTAAATACCTATGAATTCTGATCATCATAAGCTCGATACATGATGAGTTGTTTGGTGTGTGCATTGATTGCGTTTCTTCTATGAGTGCAATTTTGTATTCGTAAATACCCCTATAAGCATTTCAGAGATTAAaaaa ] consensusID : consensus_8331#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence [ATTCATCGTTCGGCGGCGTCTCCCTGCAGTGCCGGCGCACGAAGCCGGCGTCCCTCCACCGGAGTCGGCCGTCGATGCAGGTGGTGATGATGGCGGCGAGGCCGGCGATCCAGTTCATCCAGGGCACCGACGAGCAGACGATCCCGGACGTGCGGCTGACCAAGTCCCGGGACGGCACCAACGGCGTGGCCATCTTCACCTTCGACCAGCCGTCGGTGTTCGACTCGTCGGCGGAGCTGGGCGACATCACCGGCTTCTACATGATCGACGACGNNNGCGTGCTCCAGTCGGTGGACGTCAGCGNNNAGTTCGTCAACNNNNNNNNNNCGCTCATNNNNNNCNNNGNNN] [+] EMBL CF195928 [ATTCATCGTTCGGCGGCGTCTCCCTGCAGTGCCGGCGCACGAAGCCGGCGTCCCTCCACCGGAGTCGGCCGTCGATGCAGGTGGTGATGATGGCGGCGAGGCCGGCGATCCAGTTCATCCAGGGCACCGACGAGCAGACGATCCCGGACGTGCGGCTGACCAAGTCCCGGGACGGCACCAACGGCGTGGCCATCTTCACCTTCGACCAGCCGTCGGTGTTCGACTCGTCGGCGGAGCTGGGCGACATCACCGGCTTCTACATGATCGACGACGNNNGCGTGCTCCAGTCGGTGGACGTCAGCGNNNAGTTCGTCAACNNNNNNNNNNCGCTCATNNNNNNCNNNGNNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8331#0 CCTTCCTCCTTGGCGCTCATCCACCACCACCTCCTCCAAGAGCCACCAAACGGCAGCAGG 60 consensus_8331#1 ------------------------------------------------------------ consensus_8331#0 ATGGCCGCTGTGATGAAAGCTCTCGCCGTCGCCTCGCCGATCTCGGCACGAGCACAGCCC 120 consensus_8331#1 ------------------------------------------------------------ consensus_8331#0 CGACGATGCCCCGCAGGTTCGTCATGCGGCCCTAGCCAAAGCCTGCATTCATCGTTCGGC 180 consensus_8331#1 ----------------------------------------------ATTCATCGTTCGGC 14 ************** consensus_8331#0 GGCGTCTCCCTGCTGTGCCGGCGCACGAAGCCGGCGTCCCTCCACCGGAGTCGGCCGTCG 240 consensus_8331#1 GGCGTCTCCCTGCAGTGCCGGCGCACGAAGCCGGCGTCCCTCCACCGGAGTCGGCCGTCG 74 ************* ********************************************** consensus_8331#0 ATGCAGGTGGTGATGATGGCGGCGAGGCCGGCGATCCAGTTCATCCAGGGCACCGACGAG 300 consensus_8331#1 ATGCAGGTGGTGATGATGGCGGCGAGGCCGGCGATCCAGTTCATCCAGGGCACCGACGAG 134 ************************************************************ consensus_8331#0 CAGACGATCCCGGACGTGCGGCTGACCAAGTCCCGGGACGGCACCAACGGCGTGGCCATC 360 consensus_8331#1 CAGACGATCCCGGACGTGCGGCTGACCAAGTCCCGGGACGGCACCAACGGCGTGGCCATC 194 ************************************************************ consensus_8331#0 TTCACCTTCGACCAGCCGTCGGTGTTCGACTCGTCGGCAGAGCTCGGCGACATCACCGGC 420 consensus_8331#1 TTCACCTTCGACCAGCCGTCGGTGTTCGACTCGTCGGCGGAGCTGGGCGACATCACCGGC 254 ************************************** ***** *************** consensus_8331#0 TTCTACATGATCGACGACGAGGGCGTGCTCCAGTCGGTGGACGTCAGCGCCAAGTTCGTC 480 consensus_8331#1 TTCTACATGATCGACGACGNNNGCGTGCTCCAGTCGGTGGACGTCAGCGNNNAGTTCGTC 314 ******************* *************************** ******** consensus_8331#0 AACGGCAAGCCGGCGCTCATCGAGGCCAAGTACGTCATGCGCACGCCGCGGGAGTGGGAC 540 consensus_8331#1 AACNNNNNNNNNNCGCTCATNNNNNNCNNNGNNN-------------------------- 348 *** ******* * consensus_8331#0 AGGTTCATGCGATTCATGGAGAGGTACTCCCAGGCCAACGGCCTCCAGTTCGTCAAGAAG 600 consensus_8331#1 ------------------------------------------------------------ consensus_8331#0 TGATCGCCTTTTTTTTTCTCCTTTTTTCCCCCTCACACTGCCTTGAGCATGTACTGTGTG 660 consensus_8331#1 ------------------------------------------------------------ consensus_8331#0 CTCTTTCAGTGTAAATACCTATGAATTCTGATCATCATAAGCTCGATACATGATGAGTTG 720 consensus_8331#1 ------------------------------------------------------------ consensus_8331#0 TTTGGTGTGTGCATTGATTGCGTTTCTTCTATGAGTGCAATTTTGTATTCGTAAATACCC 780 consensus_8331#1 ------------------------------------------------------------ consensus_8331#0 CTATAAGCATTTCAGAGATTAATATGGAGTGG 812 consensus_8331#1 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||