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Oryza sativa
cluster # 8335 cluster # 8335       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8335#0 length = 798 sequences # 4  
consensus_8335#1 length = 620 sequences # 1  

consensusID : consensus_8335#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 798
fasta sequence
                              [ATTTTGTACTATCTGTCTGGATTCATGTTCTTTGAGGCAGTGCCTCAAGGACACTGCTTTCGCATATCTGCTATGGTAAGTCTTGTATAGGAATGCTTTTATTCTATGCCTTGTGAATTTGATATGAGTGTGCAGGTATCTTCTGAGTGAAGAAACATCAGGTTCATATATCTCTTATCCTTTCACTTACCCATTTAGTTATGTTTCATCTCTAGACGAGTTTCGCGGTCTCCACATAGCAAGCATTCTCACCGCAGGCATTCGCCTTATTCATCTGCGGAAAGGTAAGAGATTAATCAGTTCTTCCTTTATCATTATGTTACTCCAGGTGGTATTTCCACATGAATTTTTCAGGAGTTCTCAGCTTCAGTAATATGGTCGATCTTACTGTAGCTGATTATAGGAATTTGATTAGATGCAGAAAAATATATTAACGAGTTTGAGAAAATAGAAGTCAACCTTTAGGTGTCTTAAGAACATGTACCCGATTAAAAAATGTGTTCTGGGTTTACATGAAACCTTTGTGTTTTAAATTCAAATTTACATAAGTTGTTATTGCATGGACTTCCATCTCAGCTTGAGAAATTGAAGACCCTTGGTACAAAATTTTTCCTAGAACTAGAATATAT-TTGTCATGCATAACACTTATGGGCTGCTTGGTTTTAGGAATAGGACA-GGTTGGTTCTTCATGGATCATTCGATGATTTTGGTGGAACAACTGTCACTTTATTTTGTACTACGCTTGTGCTTTGAGTGATAAAAATATTGGTGTATCAACCCACTACATTGCCCAAAGTC]

[+] EMBL CB641917             [ATTTCCTACTATCTGTCTGGATTCATGTTCTTTGAGGCAGTGCCTCAAGGACACTGCTTTCGCATATCTGCTATGGTACGTCTTGTATAGGAATGCTTTTATTCTATGCCTTGTGAATTTGATATGAGTGTGCAGGTATCTTCTGAGTGAAGAAACATCAGGTTCATATATCTCTTATCCTTTCACTTACCCATTTAGTTATGTTTCATCTCTAGACGAGTTTCGCGGTCTCCACATAGCAAGCATTCTCACCGCAGGCATTCGCCTTATTCATCTGCGGAAAGGTAAGAGATTAATCAGTTCTTCCTTTATCATTATGTTACTCCAGGTGGTATTTCCACATGAATTTTTCAGGAGTTCTCAGCTTCAGTAATATGGTCGATCTTACTGTAGCTGATTATAGGAATTTGATTAGATGCAGAAAAATATATTAACGAGTTTGAGAAAATAGAAGTCAACCTTTAGGTGTCTTAAGAACATGTACCCGATTAAAAAATGTGTTCTGGGTTTACATGAAACCTTTGTGTTTTAAATTCAAATTTACATAAGTTGTTATTGCATGGACTTCCATCTCAGCTTGAGAAATTGAAGACCCTTGGTACAAAATTTTTCCTAGAACTAGAATATAT TTGTCATGCATAACACTTATGGGCTGCTTGGTTTTAGGAATAGGACA GGTTGGTTCTTCATGGATCATTCGATGATTTTGGTGGAACAACTGTCACTTTATTNTGTACTACGCTTGTGCTTTGAGTGATAAAAATATTGGTGTATCAACCCACTACATTGCCCAAAGTC]
[+] EMBL CB641834             [ATTTTGTACTATCTGTCTGGATTCATGTTCTTTGAGGCAGTGCCTCAAGGACACTGCTTTCGCATATCTGCTATGGTAAGTCTTGTATAGGAATGCTTTTATTCTATGCCTTGTGAATTTGATATGAGTGTGCAGGTATCTTCTGAGTGAAGAAACATCAGGTTCATATATCTCTTATCCTTTCACTTACCCATTTAGTTATGTTTCATCTCTAGACGAGTTTCGCGGTCTCCACATAGCAAGCATTCTCACCGCAGGCATTCGCCTTATTCATCTGCGGAAAGGTAAGAGATTAATCAGTTCTTCCTTTATCATTATGTTACTCCAGGTGGTATTTCCACATGAATTTTTCAGGAGTTCTCAGCTTCAGTAATATGGTCGATCTTACTGTAGCTGATTATAGGAATTTGATTAGATGCAGAAAAATATATTAACGAGTTTGAGAAAATAGAAGTCAACCTTTAGGTGTCTTAAGAACATGTACCCGATTAAAAAATGTGTTCTGGGTTTACATGAAACCTTTGTGTTTTAAATTCAAATTTACATAAGTTGTTATTGCATGGACTTCCATCTCAGCTTGAGAAATTGAAGACCCTTGGTACAAAATTTTTCCTAGAACTAGAATATAT TTGTCATGCATAACACTTATGGGCTGCTTGGTTTTAGGAATAGGACA GGTTGGTTCTTCATGGATCATTCGATGATTTTGGTGGAACAACTGTCACTTTATTTTGTACTACGCTTGTGCTTTGAGTGATAAAAATAT                                ]
[+] EMBL CB641844             [ATTTTGTACTATCTGTCTGGATTCATGTTCTTTGAGGCAGTGCCTCAAGGACACTGCTTTCGCATATCTGCTATGGTAAGTCTTGTATAGGAATGCTTTTATTCTATGCCTTGTGAATTTGATATGAGTGTGCAGGTATCTTCTGAGTGAAGAAACATCAGGTTCATATATCTCTTATCCTTTCACTTACCCATTTAGTTATGTTTCATCTCTAGACGAGTTTCGCGGTCTCCACATAGCAAGCATTCTCACCGCAGGCATTCGCCTTATTCATCTGCGGAAAGGTAAGAGATTAATCAGTTCTTCCTTTATCATTATGTTACTCCAGGTGGTATTTCCACATGAATTTTTCAGGAGTTCTCAGCTTCAGTAATATGGTCGATCTTACTGTAGCTGATTATAGGAATTTGATTAGATGCAGAAAAATATATTAACGAGTTTGAGAAAATAGAAGTCAACCTTTAGGTGTCTTAAGAACATGTACCCGATTAAAAAATGTGTTCTGGGTTTACATGAAACCTTTGTGTTTTAAATTCAAATTTACATAAGTTGTTATTGCATGGACTTCCATCTCAGCTTGAGAAATTGAAGACCCTTGGTACAAAATTTTTCCTAGAACTAGAATATAT TTGTCATGCATAACACTTATGGGCTGCTTGGTTTTAGGAATAGGACA GGTTGGTTCTTCATGGATCATTCGATGATTTTGGTGGAACAACTGTCACTTTATTTTGTACTACGCTTGTGCTTTGAGTGATAAAA                                    ]
[+] EMBL CF322652             [                                                                                                                                                                                                             TCATCTCTAGACGAGTTTCGCGGTCTCCACATAGCAAGCATTCTCACCGCAGGCATTCGCCTTATTCATCTGCGGAAAGGTAAGAGATTAATCAGTTCTTCCTTTATCATTATGTTACTCCAGGTGGTATTTCCACATGAATTTTTCAGGAGTTCTCAGCTTCAGTAATATGGTCGATCTTACTGTAGCTGATTATAGGAATTTGATTAGATGCAGAAAAATATATTAACGAGTTTGAGAAAATAGAAGTCAACCTTTAGGTGTCTTAAGAACATGTACCCGATTAAAAAATGTGTTCTGGGTTTACATGAAACCTTTGTGTTTTAAATTCAAATTTACATAAGTTGTTATTGCATGGACTTCCATCTCAGCTTGAGAAATTGAAGACCCTTGGTACAAAATTTTTCCTAGAACTAGAATATATNTTGTCATGCATAACACTTATGGGCTGCTTGGTTTTAGGAATAGGACAGGGTTGGTTCTTCA                                                                                                             ]


>consensus_8335#0 ATTTTGTACTATCTGTCTGGATTCATGTTCTTTGAGGCAGTGCCTCAAGGACACTGCTTT CGCATATCTGCTATGGTAAGTCTTGTATAGGAATGCTTTTATTCTATGCCTTGTGAATTT GATATGAGTGTGCAGGTATCTTCTGAGTGAAGAAACATCAGGTTCATATATCTCTTATCC TTTCACTTACCCATTTAGTTATGTTTCATCTCTAGACGAGTTTCGCGGTCTCCACATAGC AAGCATTCTCACCGCAGGCATTCGCCTTATTCATCTGCGGAAAGGTAAGAGATTAATCAG TTCTTCCTTTATCATTATGTTACTCCAGGTGGTATTTCCACATGAATTTTTCAGGAGTTC TCAGCTTCAGTAATATGGTCGATCTTACTGTAGCTGATTATAGGAATTTGATTAGATGCA GAAAAATATATTAACGAGTTTGAGAAAATAGAAGTCAACCTTTAGGTGTCTTAAGAACAT GTACCCGATTAAAAAATGTGTTCTGGGTTTACATGAAACCTTTGTGTTTTAAATTCAAAT TTACATAAGTTGTTATTGCATGGACTTCCATCTCAGCTTGAGAAATTGAAGACCCTTGGT ACAAAATTTTTCCTAGAACTAGAATATATTTGTCATGCATAACACTTATGGGCTGCTTGG TTTTAGGAATAGGACAGGTTGGTTCTTCATGGATCATTCGATGATTTTGGTGGAACAACT GTCACTTTATTTTGTACTACGCTTGTGCTTTGAGTGATAAAAATATTGGTGTATCAACCC ACTACATTGCCCAAAGTC



consensusID : consensus_8335#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 620
fasta sequence
                              [GAACGAGACGCCATGGGTGCTGTGCNNAGTGAGGTCCGAGTNNTTNNAGGAAGTGCCTCAAGGACACTGCTTTCGCATATCTGCTATGGTAAGTCTTGTATAGGAATGCTTTTATTCTATGCCTTGTGAATTTGATATGAGTGTGCAGGTATCTTCTGAGTGAANAAACATCAGGTTCATATATCTCTTATCCTTTCACTTACCCATTTAGTTATGTTTCATCTCTAGACNAGTTTCGCGGTCTCCACATAGCAAGCATTCTCACCGCAGGCATTCTNNTTATTCATCTGCGGAAAGGTAAGANATTAATCAGTTCTTCCTTTATCATTATGTTACTCCAGGTGGTATTTCCACATGAATTTTTCAGGAGTTCTCAGCTTCAGTAATATGGTCGATCTTACTGTAGCTGATTATAGGAATTTGATTAGATGCAGAAAAATATATTAACGAGTTTGAGAAAATAGAAGTCAACCTTTAGGTGTCTTAAGAACATGTNCCCGATTAAAAAATGTGTTCTGGGTTTACATGAAACCTTTGTGTTTTAAATTCAAATTTACATAAGTTGTTATTGCATGGACTTCCATCTCAGCTTGANNAAATTGAANACCTTGGTACAAAAT]

[+] EMBL AA751606             [GAACGAGACGCCATGGGTGCTGTGCNNAGTGAGGTCCGAGTNNTTNNAGGAAGTGCCTCAAGGACACTGCTTTCGCATATCTGCTATGGTAAGTCTTGTATAGGAATGCTTTTATTCTATGCCTTGTGAATTTGATATGAGTGTGCAGGTATCTTCTGAGTGAANAAACATCAGGTTCATATATCTCTTATCCTTTCACTTACCCATTTAGTTATGTTTCATCTCTAGACNAGTTTCGCGGTCTCCACATAGCAAGCATTCTCACCGCAGGCATTCTNNTTATTCATCTGCGGAAAGGTAAGANATTAATCAGTTCTTCCTTTATCATTATGTTACTCCAGGTGGTATTTCCACATGAATTTTTCAGGAGTTCTCAGCTTCAGTAATATGGTCGATCTTACTGTAGCTGATTATAGGAATTTGATTAGATGCAGAAAAATATATTAACGAGTTTGAGAAAATAGAAGTCAACCTTTAGGTGTCTTAAGAACATGTNCCCGATTAAAAAATGTGTTCTGGGTTTACATGAAACCTTTGTGTTTTAAATTCAAATTTACATAAGTTGTTATTGCATGGACTTCCATCTCAGCTTGANNAAATTGAANACCTTGGTACAAAAT]


>consensus_8335#1 GAACGAGACGCCATGGGTGCTGTGCNNAGTGAGGTCCGAGTNNTTNNAGGAAGTGCCTCA AGGACACTGCTTTCGCATATCTGCTATGGTAAGTCTTGTATAGGAATGCTTTTATTCTAT GCCTTGTGAATTTGATATGAGTGTGCAGGTATCTTCTGAGTGAANAAACATCAGGTTCAT ATATCTCTTATCCTTTCACTTACCCATTTAGTTATGTTTCATCTCTAGACNAGTTTCGCG GTCTCCACATAGCAAGCATTCTCACCGCAGGCATTCTNNTTATTCATCTGCGGAAAGGTA AGANATTAATCAGTTCTTCCTTTATCATTATGTTACTCCAGGTGGTATTTCCACATGAAT TTTTCAGGAGTTCTCAGCTTCAGTAATATGGTCGATCTTACTGTAGCTGATTATAGGAAT TTGATTAGATGCAGAAAAATATATTAACGAGTTTGAGAAAATAGAAGTCAACCTTTAGGT GTCTTAAGAACATGTNCCCGATTAAAAAATGTGTTCTGGGTTTACATGAAACCTTTGTGT TTTAAATTCAAATTTACATAAGTTGTTATTGCATGGACTTCCATCTCAGCTTGANNAAAT TGAANACCTTGGTACAAAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8335#0      ----------------ATTTTGTACTATCTGTCTGGATTCATGTTCTTTGAGGCAGTGCC 44
consensus_8335#1      GAACGAGACGCCATGGGTGCTGTGCNNAGTG---AGGTCCGAGTNNTTNNAGGAAGTGCC 57
                                       *  *** *    **    * * *  **  **  *** ******

consensus_8335#0      TCAAGGACACTGCTTTCGCATATCTGCTATGGTAAGTCTTGTATAGGAATGCTTTTATTC 104
consensus_8335#1      TCAAGGACACTGCTTTCGCATATCTGCTATGGTAAGTCTTGTATAGGAATGCTTTTATTC 117
                      ************************************************************

consensus_8335#0      TATGCCTTGTGAATTTGATATGAGTGTGCAGGTATCTTCTGAGTGAAGAAACATCAGGTT 164
consensus_8335#1      TATGCCTTGTGAATTTGATATGAGTGTGCAGGTATCTTCTGAGTGAANAAACATCAGGTT 177
                      *********************************************** ************

consensus_8335#0      CATATATCTCTTATCCTTTCACTTACCCATTTAGTTATGTTTCATCTCTAGACGAGTTTC 224
consensus_8335#1      CATATATCTCTTATCCTTTCACTTACCCATTTAGTTATGTTTCATCTCTAGACNAGTTTC 237
                      ***************************************************** ******

consensus_8335#0      GCGGTCTCCACATAGCAAGCATTCTCACCGCAGGCATTCGCCTTATTCATCTGCGGAAAG 284
consensus_8335#1      GCGGTCTCCACATAGCAAGCATTCTCACCGCAGGCATTCTNNTTATTCATCTGCGGAAAG 297
                      ***************************************   ******************

consensus_8335#0      GTAAGAGATTAATCAGTTCTTCCTTTATCATTATGTTACTCCAGGTGGTATTTCCACATG 344
consensus_8335#1      GTAAGANATTAATCAGTTCTTCCTTTATCATTATGTTACTCCAGGTGGTATTTCCACATG 357
                      ****** *****************************************************

consensus_8335#0      AATTTTTCAGGAGTTCTCAGCTTCAGTAATATGGTCGATCTTACTGTAGCTGATTATAGG 404
consensus_8335#1      AATTTTTCAGGAGTTCTCAGCTTCAGTAATATGGTCGATCTTACTGTAGCTGATTATAGG 417
                      ************************************************************

consensus_8335#0      AATTTGATTAGATGCAGAAAAATATATTAACGAGTTTGAGAAAATAGAAGTCAACCTTTA 464
consensus_8335#1      AATTTGATTAGATGCAGAAAAATATATTAACGAGTTTGAGAAAATAGAAGTCAACCTTTA 477
                      ************************************************************

consensus_8335#0      GGTGTCTTAAGAACATGTACCCGATTAAAAAATGTGTTCTGGGTTTACATGAAACCTTTG 524
consensus_8335#1      GGTGTCTTAAGAACATGTNCCCGATTAAAAAATGTGTTCTGGGTTTACATGAAACCTTTG 537
                      ****************** *****************************************

consensus_8335#0      TGTTTTAAATTCAAATTTACATAAGTTGTTATTGCATGGACTTCCATCTCAGCTTGAGAA 584
consensus_8335#1      TGTTTTAAATTCAAATTTACATAAGTTGTTATTGCATGGACTTCCATCTCAGCTTGANNA 597
                      *********************************************************  *

consensus_8335#0      ATTGAAGACCCTTGGTACAAAATTTTTCCTAGAACTAGAATATATTTGTCATGCATAACA 644
consensus_8335#1      AATTGAANACCTTGGTACAAAAT------------------------------------- 620
                      * *  *   **************                                     

consensus_8335#0      CTTATGGGCTGCTTGGTTTTAGGAATAGGACAGGTTGGTTCTTCATGGATCATTCGATGA 704
consensus_8335#1      ------------------------------------------------------------
                                                                                  

consensus_8335#0      TTTTGGTGGAACAACTGTCACTTTATTTTGTACTACGCTTGTGCTTTGAGTGATAAAAAT 764
consensus_8335#1      ------------------------------------------------------------
                                                                                  

consensus_8335#0      ATTGGTGTATCAACCCACTACATTGCCCAAAGTC 798
consensus_8335#1      ----------------------------------
                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)