These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8335#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 798 fasta sequence [ATTTTGTACTATCTGTCTGGATTCATGTTCTTTGAGGCAGTGCCTCAAGGACACTGCTTTCGCATATCTGCTATGGTAAGTCTTGTATAGGAATGCTTTTATTCTATGCCTTGTGAATTTGATATGAGTGTGCAGGTATCTTCTGAGTGAAGAAACATCAGGTTCATATATCTCTTATCCTTTCACTTACCCATTTAGTTATGTTTCATCTCTAGACGAGTTTCGCGGTCTCCACATAGCAAGCATTCTCACCGCAGGCATTCGCCTTATTCATCTGCGGAAAGGTAAGAGATTAATCAGTTCTTCCTTTATCATTATGTTACTCCAGGTGGTATTTCCACATGAATTTTTCAGGAGTTCTCAGCTTCAGTAATATGGTCGATCTTACTGTAGCTGATTATAGGAATTTGATTAGATGCAGAAAAATATATTAACGAGTTTGAGAAAATAGAAGTCAACCTTTAGGTGTCTTAAGAACATGTACCCGATTAAAAAATGTGTTCTGGGTTTACATGAAACCTTTGTGTTTTAAATTCAAATTTACATAAGTTGTTATTGCATGGACTTCCATCTCAGCTTGAGAAATTGAAGACCCTTGGTACAAAATTTTTCCTAGAACTAGAATATAT-TTGTCATGCATAACACTTATGGGCTGCTTGGTTTTAGGAATAGGACA-GGTTGGTTCTTCATGGATCATTCGATGATTTTGGTGGAACAACTGTCACTTTATTTTGTACTACGCTTGTGCTTTGAGTGATAAAAATATTGGTGTATCAACCCACTACATTGCCCAAAGTC] [+] EMBL CB641917 [ATTTCCTACTATCTGTCTGGATTCATGTTCTTTGAGGCAGTGCCTCAAGGACACTGCTTTCGCATATCTGCTATGGTACGTCTTGTATAGGAATGCTTTTATTCTATGCCTTGTGAATTTGATATGAGTGTGCAGGTATCTTCTGAGTGAAGAAACATCAGGTTCATATATCTCTTATCCTTTCACTTACCCATTTAGTTATGTTTCATCTCTAGACGAGTTTCGCGGTCTCCACATAGCAAGCATTCTCACCGCAGGCATTCGCCTTATTCATCTGCGGAAAGGTAAGAGATTAATCAGTTCTTCCTTTATCATTATGTTACTCCAGGTGGTATTTCCACATGAATTTTTCAGGAGTTCTCAGCTTCAGTAATATGGTCGATCTTACTGTAGCTGATTATAGGAATTTGATTAGATGCAGAAAAATATATTAACGAGTTTGAGAAAATAGAAGTCAACCTTTAGGTGTCTTAAGAACATGTACCCGATTAAAAAATGTGTTCTGGGTTTACATGAAACCTTTGTGTTTTAAATTCAAATTTACATAAGTTGTTATTGCATGGACTTCCATCTCAGCTTGAGAAATTGAAGACCCTTGGTACAAAATTTTTCCTAGAACTAGAATATAT TTGTCATGCATAACACTTATGGGCTGCTTGGTTTTAGGAATAGGACA GGTTGGTTCTTCATGGATCATTCGATGATTTTGGTGGAACAACTGTCACTTTATTNTGTACTACGCTTGTGCTTTGAGTGATAAAAATATTGGTGTATCAACCCACTACATTGCCCAAAGTC] [+] EMBL CB641834 [ATTTTGTACTATCTGTCTGGATTCATGTTCTTTGAGGCAGTGCCTCAAGGACACTGCTTTCGCATATCTGCTATGGTAAGTCTTGTATAGGAATGCTTTTATTCTATGCCTTGTGAATTTGATATGAGTGTGCAGGTATCTTCTGAGTGAAGAAACATCAGGTTCATATATCTCTTATCCTTTCACTTACCCATTTAGTTATGTTTCATCTCTAGACGAGTTTCGCGGTCTCCACATAGCAAGCATTCTCACCGCAGGCATTCGCCTTATTCATCTGCGGAAAGGTAAGAGATTAATCAGTTCTTCCTTTATCATTATGTTACTCCAGGTGGTATTTCCACATGAATTTTTCAGGAGTTCTCAGCTTCAGTAATATGGTCGATCTTACTGTAGCTGATTATAGGAATTTGATTAGATGCAGAAAAATATATTAACGAGTTTGAGAAAATAGAAGTCAACCTTTAGGTGTCTTAAGAACATGTACCCGATTAAAAAATGTGTTCTGGGTTTACATGAAACCTTTGTGTTTTAAATTCAAATTTACATAAGTTGTTATTGCATGGACTTCCATCTCAGCTTGAGAAATTGAAGACCCTTGGTACAAAATTTTTCCTAGAACTAGAATATAT TTGTCATGCATAACACTTATGGGCTGCTTGGTTTTAGGAATAGGACA GGTTGGTTCTTCATGGATCATTCGATGATTTTGGTGGAACAACTGTCACTTTATTTTGTACTACGCTTGTGCTTTGAGTGATAAAAATAT ] [+] EMBL CB641844 [ATTTTGTACTATCTGTCTGGATTCATGTTCTTTGAGGCAGTGCCTCAAGGACACTGCTTTCGCATATCTGCTATGGTAAGTCTTGTATAGGAATGCTTTTATTCTATGCCTTGTGAATTTGATATGAGTGTGCAGGTATCTTCTGAGTGAAGAAACATCAGGTTCATATATCTCTTATCCTTTCACTTACCCATTTAGTTATGTTTCATCTCTAGACGAGTTTCGCGGTCTCCACATAGCAAGCATTCTCACCGCAGGCATTCGCCTTATTCATCTGCGGAAAGGTAAGAGATTAATCAGTTCTTCCTTTATCATTATGTTACTCCAGGTGGTATTTCCACATGAATTTTTCAGGAGTTCTCAGCTTCAGTAATATGGTCGATCTTACTGTAGCTGATTATAGGAATTTGATTAGATGCAGAAAAATATATTAACGAGTTTGAGAAAATAGAAGTCAACCTTTAGGTGTCTTAAGAACATGTACCCGATTAAAAAATGTGTTCTGGGTTTACATGAAACCTTTGTGTTTTAAATTCAAATTTACATAAGTTGTTATTGCATGGACTTCCATCTCAGCTTGAGAAATTGAAGACCCTTGGTACAAAATTTTTCCTAGAACTAGAATATAT TTGTCATGCATAACACTTATGGGCTGCTTGGTTTTAGGAATAGGACA GGTTGGTTCTTCATGGATCATTCGATGATTTTGGTGGAACAACTGTCACTTTATTTTGTACTACGCTTGTGCTTTGAGTGATAAAA ] [+] EMBL CF322652 [ TCATCTCTAGACGAGTTTCGCGGTCTCCACATAGCAAGCATTCTCACCGCAGGCATTCGCCTTATTCATCTGCGGAAAGGTAAGAGATTAATCAGTTCTTCCTTTATCATTATGTTACTCCAGGTGGTATTTCCACATGAATTTTTCAGGAGTTCTCAGCTTCAGTAATATGGTCGATCTTACTGTAGCTGATTATAGGAATTTGATTAGATGCAGAAAAATATATTAACGAGTTTGAGAAAATAGAAGTCAACCTTTAGGTGTCTTAAGAACATGTACCCGATTAAAAAATGTGTTCTGGGTTTACATGAAACCTTTGTGTTTTAAATTCAAATTTACATAAGTTGTTATTGCATGGACTTCCATCTCAGCTTGAGAAATTGAAGACCCTTGGTACAAAATTTTTCCTAGAACTAGAATATATNTTGTCATGCATAACACTTATGGGCTGCTTGGTTTTAGGAATAGGACAGGGTTGGTTCTTCA ] consensusID : consensus_8335#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence [GAACGAGACGCCATGGGTGCTGTGCNNAGTGAGGTCCGAGTNNTTNNAGGAAGTGCCTCAAGGACACTGCTTTCGCATATCTGCTATGGTAAGTCTTGTATAGGAATGCTTTTATTCTATGCCTTGTGAATTTGATATGAGTGTGCAGGTATCTTCTGAGTGAANAAACATCAGGTTCATATATCTCTTATCCTTTCACTTACCCATTTAGTTATGTTTCATCTCTAGACNAGTTTCGCGGTCTCCACATAGCAAGCATTCTCACCGCAGGCATTCTNNTTATTCATCTGCGGAAAGGTAAGANATTAATCAGTTCTTCCTTTATCATTATGTTACTCCAGGTGGTATTTCCACATGAATTTTTCAGGAGTTCTCAGCTTCAGTAATATGGTCGATCTTACTGTAGCTGATTATAGGAATTTGATTAGATGCAGAAAAATATATTAACGAGTTTGAGAAAATAGAAGTCAACCTTTAGGTGTCTTAAGAACATGTNCCCGATTAAAAAATGTGTTCTGGGTTTACATGAAACCTTTGTGTTTTAAATTCAAATTTACATAAGTTGTTATTGCATGGACTTCCATCTCAGCTTGANNAAATTGAANACCTTGGTACAAAAT] [+] EMBL AA751606 [GAACGAGACGCCATGGGTGCTGTGCNNAGTGAGGTCCGAGTNNTTNNAGGAAGTGCCTCAAGGACACTGCTTTCGCATATCTGCTATGGTAAGTCTTGTATAGGAATGCTTTTATTCTATGCCTTGTGAATTTGATATGAGTGTGCAGGTATCTTCTGAGTGAANAAACATCAGGTTCATATATCTCTTATCCTTTCACTTACCCATTTAGTTATGTTTCATCTCTAGACNAGTTTCGCGGTCTCCACATAGCAAGCATTCTCACCGCAGGCATTCTNNTTATTCATCTGCGGAAAGGTAAGANATTAATCAGTTCTTCCTTTATCATTATGTTACTCCAGGTGGTATTTCCACATGAATTTTTCAGGAGTTCTCAGCTTCAGTAATATGGTCGATCTTACTGTAGCTGATTATAGGAATTTGATTAGATGCAGAAAAATATATTAACGAGTTTGAGAAAATAGAAGTCAACCTTTAGGTGTCTTAAGAACATGTNCCCGATTAAAAAATGTGTTCTGGGTTTACATGAAACCTTTGTGTTTTAAATTCAAATTTACATAAGTTGTTATTGCATGGACTTCCATCTCAGCTTGANNAAATTGAANACCTTGGTACAAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8335#0 ----------------ATTTTGTACTATCTGTCTGGATTCATGTTCTTTGAGGCAGTGCC 44 consensus_8335#1 GAACGAGACGCCATGGGTGCTGTGCNNAGTG---AGGTCCGAGTNNTTNNAGGAAGTGCC 57 * *** * ** * * * ** ** *** ****** consensus_8335#0 TCAAGGACACTGCTTTCGCATATCTGCTATGGTAAGTCTTGTATAGGAATGCTTTTATTC 104 consensus_8335#1 TCAAGGACACTGCTTTCGCATATCTGCTATGGTAAGTCTTGTATAGGAATGCTTTTATTC 117 ************************************************************ consensus_8335#0 TATGCCTTGTGAATTTGATATGAGTGTGCAGGTATCTTCTGAGTGAAGAAACATCAGGTT 164 consensus_8335#1 TATGCCTTGTGAATTTGATATGAGTGTGCAGGTATCTTCTGAGTGAANAAACATCAGGTT 177 *********************************************** ************ consensus_8335#0 CATATATCTCTTATCCTTTCACTTACCCATTTAGTTATGTTTCATCTCTAGACGAGTTTC 224 consensus_8335#1 CATATATCTCTTATCCTTTCACTTACCCATTTAGTTATGTTTCATCTCTAGACNAGTTTC 237 ***************************************************** ****** consensus_8335#0 GCGGTCTCCACATAGCAAGCATTCTCACCGCAGGCATTCGCCTTATTCATCTGCGGAAAG 284 consensus_8335#1 GCGGTCTCCACATAGCAAGCATTCTCACCGCAGGCATTCTNNTTATTCATCTGCGGAAAG 297 *************************************** ****************** consensus_8335#0 GTAAGAGATTAATCAGTTCTTCCTTTATCATTATGTTACTCCAGGTGGTATTTCCACATG 344 consensus_8335#1 GTAAGANATTAATCAGTTCTTCCTTTATCATTATGTTACTCCAGGTGGTATTTCCACATG 357 ****** ***************************************************** consensus_8335#0 AATTTTTCAGGAGTTCTCAGCTTCAGTAATATGGTCGATCTTACTGTAGCTGATTATAGG 404 consensus_8335#1 AATTTTTCAGGAGTTCTCAGCTTCAGTAATATGGTCGATCTTACTGTAGCTGATTATAGG 417 ************************************************************ consensus_8335#0 AATTTGATTAGATGCAGAAAAATATATTAACGAGTTTGAGAAAATAGAAGTCAACCTTTA 464 consensus_8335#1 AATTTGATTAGATGCAGAAAAATATATTAACGAGTTTGAGAAAATAGAAGTCAACCTTTA 477 ************************************************************ consensus_8335#0 GGTGTCTTAAGAACATGTACCCGATTAAAAAATGTGTTCTGGGTTTACATGAAACCTTTG 524 consensus_8335#1 GGTGTCTTAAGAACATGTNCCCGATTAAAAAATGTGTTCTGGGTTTACATGAAACCTTTG 537 ****************** ***************************************** consensus_8335#0 TGTTTTAAATTCAAATTTACATAAGTTGTTATTGCATGGACTTCCATCTCAGCTTGAGAA 584 consensus_8335#1 TGTTTTAAATTCAAATTTACATAAGTTGTTATTGCATGGACTTCCATCTCAGCTTGANNA 597 ********************************************************* * consensus_8335#0 ATTGAAGACCCTTGGTACAAAATTTTTCCTAGAACTAGAATATATTTGTCATGCATAACA 644 consensus_8335#1 AATTGAANACCTTGGTACAAAAT------------------------------------- 620 * * * ************** consensus_8335#0 CTTATGGGCTGCTTGGTTTTAGGAATAGGACAGGTTGGTTCTTCATGGATCATTCGATGA 704 consensus_8335#1 ------------------------------------------------------------ consensus_8335#0 TTTTGGTGGAACAACTGTCACTTTATTTTGTACTACGCTTGTGCTTTGAGTGATAAAAAT 764 consensus_8335#1 ------------------------------------------------------------ consensus_8335#0 ATTGGTGTATCAACCCACTACATTGCCCAAAGTC 798 consensus_8335#1 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||