cluster # 8336

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8336 cluster # 8336 Sequences # 5 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8336#0 length = 990 sequences # 5
consensusID : consensus_8336#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 990
fasta sequence
                              [TCCGACCGCGCCCAAAGAAGGTCCAAGAGCCCAACTGAACCGGAGGAGTCGAGCCGCCGCCTTCCTCTTCGCACACCTCCACCGACCGCCGCCGATCGTGCGGTGCGGCCGGCGT-CATGGCGGCGGCCGGCNACCTCACCGACGAGGAGCGCCGCGCGCTC-CGGGGCAGCAAGTTCGCGCCGCTTCCAGCGCCTACTGCCCCTTCCCGCCCCCAGCCCAGGATGGCTCATCCTGGAGGACCACTAACTACAAACAAGGCTGCTGCTTTAGCAAAATTCCTTGAGAGAAAGCTTCAGC-AGCCTGATGGGCTGGAATCTCTGAACCCAGACCTTGTCAAATTGGCTGTGAGAAATGCAAAAGAAACAATAAAGGCTAGCAAGGGTGAACCGTCAACTTCAGGAAGAATAGTACGGCACGTTTCATCATTCGGAGATTCTTCTGAGGATTCTGATGATTCAAAAGATGGAGAAGAAACCAAGGGGGTCAAAAGAAAAAGGAAGAATAAGAAGGATAAGAGTTTTCAAAA-CGGAGGAGAACAGAGCAAGAAAAAGAAGAAAAATAAAAAGAAAAAT-CTAAAGGCTGCTAAAGATTCCA-AGTCCC-AAAAAGCATCGAAGAAGAAAAAG-TTGAAA-TCCCTATGA-TTC-TTTAACTTCTCTGGTA-TTAGGGAGCTGAAGGCGTTGCTGTTGTCATTTTTCTTGATTTCACTTTTTTGTGAGTCCCATTTCTTGTAAGCATTGTAAGCACTTGCTCTTCCTGGCATTTTGACACTGGAAATCCCATTTGCGGGCTGCATGCCTGTCACATGATGACCGGAAGCCACATTT-GTCGAGAGAGGCAAGACCTCAAGACTAGCACTTGTATACAATTTACAGTGAACAATAC-AAACCTGTGAAATCCAGTGCTGCAAAACTGAATTATGGGTGCTGGCTTGCTGTTTCCTCACCTGGGGCATTGAACTCAGTCAAACACGAATTTCGCTTGTATTCTATAAAA]

[+] EMBL AK066595             [TCCGACCGCGCCCAAAGAAGGTCCAAGAGCCCAACTGAACCGGAGGAGTCGAGCCGCCGCCTTCCTCTTCGCACACCTCCACCGACCGCCGCCGATCGTGCGGTGCGGCCGGCGT CATGGCGGCGGCCGGCGACCTCACCGACGAGGAGCGCCGCGCGCTC CGGGGCAGCAAGTTCGCGCCGCTTCCAGCGCCTACTGCCCCTTCCCGCCCCCAGCCCAGGATGGCTCATCCTGGAGGACCACTAACTACAAACAAGGCTGCTGCTTTAGCAAAATTCCTTGAGAGAAAGCTTCAGC AGCCTGATGGGCTGGAATCTCTGAACCCAGACCTTGTCAAATTGGCTGTGAGAAATGCAAAAGAAACAATAAAGGCTAGCAAGGGTGAACCGTCAACTTCAGGAAGAATAGTACGGCACGTTTCATCATTCGGAGATTCTTCTGAGGATTCTGATGATTCAAAAGATGGAGAAGAAACCAAGGGGGTCAAAAGAAAAAGGAAGAATAAGAAGGATAAGAGTTTTCAAAA CGGAGGAGAACAGAGCAAGAAAAAGAAGAAAAATAAAAAGAAAAAT CTAAAGGCTGCTAAAGATTCCA AGTCCC AAAAAGCATCGAAGAAGAAAAAG TTGAAA TCCCTATGA TTC TTTAACTTCTCTGGTA TTAGGGAGCTGAAGGCGTTGCTGTTGTCATTTTTCTTGATTTCACTTTTTTGTGAGTCCCATTTCTTGTAAGCATTGTAAGCACTTGCTCTTCCTGGCATTTTGACACTGGAAATCCCATTTGCGGGCTGCATGCCTGTCACATGATGACCGGAAGCCACATTT GTCGAGAGAGGCAAGACCTCAAGACTAGCACTTGTATACAATTTACAGTGAACAATACAAAACCTGTGAAATCCAGTGCTGCAAAACTGAATTATGGGTGCTGGCTTGCTGTTTCCTCACCTGGGGCATTGAACTCAGTCAAACACGA                      ]
[+] EMBL C28017               [                                                                              CCACCGACCGCCGCCGATCGTNCGGTGCGGCCGGCNT CATGGCGGCGGCCGGCNACCTCACCGACGAGGAGCGCCGCGCG TCGNNGTGCAGCAAGTTCGCGCCGNTTCCAGCGCCTACTGCCCCTTCCCGCCCCCAGCCCAGGATGGCTCATCCTGGAGGACCACTAACTACANACAAGGCTGCTGCTTTAGCAAAATTCCTTGAGAGAAAGCTTCAGCAAGCCTGATGGGCTGGAATNTTTGAACCCAGACCTTGTNAAATTGGCTGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU085808             [                                                                               CACCGACCGCCGCCGATCGTGCGGTGCGGCCGGCGTNCATGGCGGCGGCCGGCNNCTTCACCGACGAGGAGCGCCGCGCGNTC CGGGGCAGCAAGTTCGCGCCGCTTCCAGCGCCTACTGCCCCTTCCCGCCCCNAGCCCAGGNTGGCTCATCCTGGAGGACCACTAACTACAAACAAGGCTGCTGCTTTAGCAAAATTCCTTGAGAGAAAGCTTCAGC AGCCTGATGGGCTGGAATCTCTGAACCCAGACCTTGTCAAATTGGCTGTGAGAAATGCAAAAa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BI813765             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AAGAATAAGAAGGATAAGAGTTTTCAAAACCGGAGGAGAACAGAGCAAGAAAAAGAAGAAAAATAAAAAGAAAAATCCTAAAGGCTGCTAAAGATTCCA AGTCCC AAAAAGCATCGAAGAAGAAAAAG TTGAAA TCCCTATGA TTC TTTAACTTCTCTGGTA TTAGGGAGCTGAAGGCGTTGCTGTTGTCATTTTTCTTGATTTCACTTTTTTGTGAGTCCCATTTCTTGTAAGCATTGTAAGCACTTGCTCTTCCTGGCATTTTGACACTGGAAATCCCATTTGCGGGCTGCATGCCTGTCACATGATGACCGGAAGCCACATTT GTCGAGAGAGGCAAGACCTCAAGACTAGCACTTGTATACAATTTACAGTGAACAATAC AAACCTGTGAAATCCAGTGCTGC AAACTGAATTAaaaaaaa                                                                     ]
[+] EMBL BI807125             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  gTCCACAGTCCCGATAAAGCATCGAAGAAGAAAAAGTTTGAAAGTCCCTATGATTTCTTTTAACTTCTCTGGTATTTAGGGAGCTGAAGGCGTTGCTGTTGTCATTTTTCTTGATTTCACTTTTTNGTGAGTCCCATTTCTTGTAAGCATTGTAAGCACTTGCTCTTCCTGGCATTTTGACACTGGAAATCCCATTTGCGGGCTGCATGCCTGTCACATGATGACCGGAAGCCACATTTCCTCGAGAGAGGCAAGACCTCAAGACTAGCACTTGTATACAATTTACAGTGAAC ATAC AAACCTGTGAAATCCAGTGCTGCAAAACTGAATTATGGGTGCTGGCTTGCTGTTTCCTCACCTGGGGCATTGAACTCAGTCAAACACGAATTTCGCTTGTATTCTATAAAA]




>consensus_8336#0
TCCGACCGCGCCCAAAGAAGGTCCAAGAGCCCAACTGAACCGGAGGAGTCGAGCCGCCGC
CTTCCTCTTCGCACACCTCCACCGACCGCCGCCGATCGTGCGGTGCGGCCGGCGTCATGG
CGGCGGCCGGCNACCTCACCGACGAGGAGCGCCGCGCGCTCCGGGGCAGCAAGTTCGCGC
CGCTTCCAGCGCCTACTGCCCCTTCCCGCCCCCAGCCCAGGATGGCTCATCCTGGAGGAC
CACTAACTACAAACAAGGCTGCTGCTTTAGCAAAATTCCTTGAGAGAAAGCTTCAGCAGC
CTGATGGGCTGGAATCTCTGAACCCAGACCTTGTCAAATTGGCTGTGAGAAATGCAAAAG
AAACAATAAAGGCTAGCAAGGGTGAACCGTCAACTTCAGGAAGAATAGTACGGCACGTTT
CATCATTCGGAGATTCTTCTGAGGATTCTGATGATTCAAAAGATGGAGAAGAAACCAAGG
GGGTCAAAAGAAAAAGGAAGAATAAGAAGGATAAGAGTTTTCAAAACGGAGGAGAACAGA
GCAAGAAAAAGAAGAAAAATAAAAAGAAAAATCTAAAGGCTGCTAAAGATTCCAAGTCCC
AAAAAGCATCGAAGAAGAAAAAGTTGAAATCCCTATGATTCTTTAACTTCTCTGGTATTA
GGGAGCTGAAGGCGTTGCTGTTGTCATTTTTCTTGATTTCACTTTTTTGTGAGTCCCATT
TCTTGTAAGCATTGTAAGCACTTGCTCTTCCTGGCATTTTGACACTGGAAATCCCATTTG
CGGGCTGCATGCCTGTCACATGATGACCGGAAGCCACATTTGTCGAGAGAGGCAAGACCT
CAAGACTAGCACTTGTATACAATTTACAGTGAACAATACAAACCTGTGAAATCCAGTGCT
GCAAAACTGAATTATGGGTGCTGGCTTGCTGTTTCCTCACCTGGGGCATTGAACTCAGTC
AAACACGAATTTCGCTTGTATTCTATAAAA
clustalw multiple alignements is not computed in this case