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Oryza sativa
cluster # 8339 cluster # 8339       Sequences # 5       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8339#0 length = 1091 sequences # 2  
consensus_8339#1 length = 824 sequences # 1  
consensus_8339#2 length = 644 sequences # 1  
consensus_8339#3 length = 641 sequences # 1  

consensusID : consensus_8339#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1091
fasta sequence
                              [CCGCATTTCAACCTGCAATCTTTAAACACACACATTATCATCAAAAGAGAGAGCACCAAACCGCCAAAATGGGTAACAAGGAGAAGAGCCATCTTAACGTCGTCGTCATCGGACACGTCGACTCCGGAAAGTCCACGACTACCGGCCACTTGATCTACAAGCTGAAGGGTATTGACCAGCGTACGATCGAGAAGTACGAGAAGGAAGCCGCTGAGTTGGGCAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGCGGTATCACCATCGACATTGCTCTTTGGAAGTTCGAGACCGCCAAGTACCAGGTCACCGTCATTGACGCCCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCGCAGGCCGACTGCGCCATTCTGGTCATCGGTGCCGGTACCGGTGAGTTCGAGGCTGGTATCTTCCAA-GATGGGCAGAACCCGAG-GCACCCTCTGCTCCTTTTCACCCTGTGTG-TAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACTGCCAAGTGGGCCCAGTCCCGTTACGACGAGATTGTCAAGGAGACCTCCAACTTCTTGAAGAAGATTGGTTT-AACCCTGACTCTGT-CCTTNCGTT-CCATCTCCGGTTTCAACGGTGACCACATGATCTCGGAGTCCGCCGACATCAAGGGCAACATCTCCCCTAACGCTCCTTGGTACAAGGGCTGGACCAAGACCGTCAACAAGGACGGTAAGAAGGAGAAGGTCATCGGTGGTGCTTCGCTCCAGGACGCCATTGACGACGTNACCCCCTCCACTCGTCCCACCGAGCAAGGCCCTTCGGGTTTCCCTTCAGGAATGTATACAAAATCGGTGGTTATGGCAACAATCCCGGGTGGGCCGGTATCGAGACTGGTATCCTTAAGCCCGGTATGGTCGGTACCTTCGCCCCCGGCAACGTCACCACTGAAGTCAAGTCCGTGGAGAAGCACNACCAGCAGCTTCCCGAGGTGTCCCCCGTAGACACGTTGGTTCAACGTCAAGAACGTGTCCGGCAGGACATTCNCCGTGGAACGTCCTGGGGACAGCAGAC]

[+] EMBL AW155346             [CCGCATTTCAACCTGCAATCTTTAAACACACACATTATCATCAAAAGAGAGAGCACCAAACCGCCAAAATGGGTAACAAGGAGAAGAGCCATCTTAACGTCGTCGTCATCGGACACGTCGACTCCGGAAAGTCCACGACTACCGGCCACTTGATCTACAAGCTGAAGGGTATTGACCAGCGTACGATCGAGAAGTACGAGAAGGAAGCCGCTGAGTTGGGCAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGCGGTATCACCATCGACATTGCTCTTTGGAAGTTCGAGACCGCCAAGTACCAGGTCACCGTCATTGACGCCCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCGCAGGCCGACTGCGCCATTCTGGTCATCGGTGCCGGTACCGGTGAGTTCGAGGCTGGTATCTTCCAA GATGGGCAGAACCCGAG GCACCCTCTGCTCCTTTTCACCCTGTGTG TAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACTGCCAAGTGGGCCCAGTCCCGTTACGACGAGATTGTCAAGGAGACCTCCAACTTCTTGAAGAAGATTGGTTT AACCCTGACTCTGT CCTTNCGTT CCATCTCCGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AW155402             [                                                                                                                                                                                                                                                                                                                                                                                                        CAGGCCGACTGCGCCATTCTGGTCATCGGTGCCGGTACCGGTGAGTTCGAGGCTGGTATC TCCAAGGATGGCCAG ACCCGTGAGCACGCTCTGCTCGCTTTCACCCTGNGTGTTAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACTGCCAAGTGGGCCCAGTCCCGTTACGACGAGATTGTCAAGGAGACCTCCAACTTCTTGAAGAAGATTGGTTTCAACCCTGACTCCGTCCCCTTCGTTCCCATCTCCGGTTTCAACGGTGACCACATGATCTCGGAGTCCGCCGACATCAAGGGCAACATCTCCCCTAACGCTCCTTGGTACAAGGGCTGGACCAAGACCGTCAACAAGGACGGTAAGAAGGAGAAGGTCATCGGTGGTGCTTCGCTCCAGGACGCCATTGACGACGTNACCCCCTCCACTCGTCCCACCGAGCAAGGCCCTTCGGGTTTCCCTTCAGGAATGTATACAAAATCGGTGGTTATGGCAACAATCCCGGGTGGGCCGGTATCGAGACTGGTATCCTTAAGCCCGGTATGGTCGGTACCTTCGCCCCCGGCAACGTCACCACTGAAGTCAAGTCCGTGGAGAAGCACNACCAGCAGCTTCCCGAGGTGTCCCCCGTAGACACGTTGGTTCAACGTCAAGAACGTGTCCGGCAGGACATTCNCCGTGGAACGTCCTGGGGACAGCAGAC]


>consensus_8339#0 CCGCATTTCAACCTGCAATCTTTAAACACACACATTATCATCAAAAGAGAGAGCACCAAA CCGCCAAAATGGGTAACAAGGAGAAGAGCCATCTTAACGTCGTCGTCATCGGACACGTCG ACTCCGGAAAGTCCACGACTACCGGCCACTTGATCTACAAGCTGAAGGGTATTGACCAGC GTACGATCGAGAAGTACGAGAAGGAAGCCGCTGAGTTGGGCAAGGGTTCCTTCAAGTATG CCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGCGGTATCACCATCGACATTGCTC TTTGGAAGTTCGAGACCGCCAAGTACCAGGTCACCGTCATTGACGCCCCCGGTCACCGTG ATTTCATCAAGAACATGATTACTGGTACTTCGCAGGCCGACTGCGCCATTCTGGTCATCG GTGCCGGTACCGGTGAGTTCGAGGCTGGTATCTTCCAAGATGGGCAGAACCCGAGGCACC CTCTGCTCCTTTTCACCCTGTGTGTAGGCAGCTCATTGTTGCCGTCAACAAGATGGACAC TGCCAAGTGGGCCCAGTCCCGTTACGACGAGATTGTCAAGGAGACCTCCAACTTCTTGAA GAAGATTGGTTTAACCCTGACTCTGTCCTTNCGTTCCATCTCCGGTTTCAACGGTGACCA CATGATCTCGGAGTCCGCCGACATCAAGGGCAACATCTCCCCTAACGCTCCTTGGTACAA GGGCTGGACCAAGACCGTCAACAAGGACGGTAAGAAGGAGAAGGTCATCGGTGGTGCTTC GCTCCAGGACGCCATTGACGACGTNACCCCCTCCACTCGTCCCACCGAGCAAGGCCCTTC GGGTTTCCCTTCAGGAATGTATACAAAATCGGTGGTTATGGCAACAATCCCGGGTGGGCC GGTATCGAGACTGGTATCCTTAAGCCCGGTATGGTCGGTACCTTCGCCCCCGGCAACGTC ACCACTGAAGTCAAGTCCGTGGAGAAGCACNACCAGCAGCTTCCCGAGGTGTCCCCCGTA GACACGTTGGTTCAACGTCAAGAACGTGTCCGGCAGGACATTCNCCGTGGAACGTCCTGG GGACAGCAGAC



consensusID : consensus_8339#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 824
fasta sequence
                              [CCGCATTTCAACCTGCAATCTTTAAACACACACATTATCATCAAAAAGAGAGCACCAAACCGCCAAAATGGGTGGCGATGAGAAGAGCCATCTTAACGTCGTCGACATCGGACACGTCTACTCCGGAAAGTCCACGACTACCGGCCACTTGATCTACAAGCTGAACGGTATTGACCATCGTACGATCGACAAGTACGAGAAAGAAGCCGCTGAGTTGGGCAATGGTTCCTTCAAGTATGCCTGTGTTCTTGACAAGCTCAATGCCGATCGTGAGCGCGGTATCACCATCGACATTGATCTTCGGACGTTCGAGACCGACAAGCTCCAGGTCACCGTCATTGACTCCCCCGGACACCGTGATTTCATCAAGACCATGAATAACTGGACTTCCCATGCCGACTGCGCCATTCTGTCATCGGGCTCCTACCGGTGACTCNAGGCTTGTATCTCAAGGTCGTCATACCCGTAGCCGCTCTGTCGTTTCACCTGTGTGTAAGCACTATTGTTGCGATACATATGGCTCTGCATTGGCCATTCCGTTCACAGATGTAGGAACTCACTTCTGAGAGATGTTCACTTATCTNCCTCTTCCATTCGTTACGGACAATACTCGATCGCGCATAGCACTTTCTACCTCTGTCAGGTGCCAACCCACAGAGAAAGAAGGTCTGTGTTCTAGACTATAAGTCCTTCTATCACAAGCTCTTCCAATTAAATAGTTGTACTGCCTGATATTTAGTCGCTTTCCTACTAAATCGATAACTTCTACTACAATTTCCTTATTCTATATAATGATACTTTTTCTTTTCCCTCCTTCTCTCTAA]

[+] EMBL AW155529             [CCGCATTTCAACCTGCAATCTTTAAACACACACATTATCATCAAAAAGAGAGCACCAAACCGCCAAAATGGGTGGCGATGAGAAGAGCCATCTTAACGTCGTCGACATCGGACACGTCTACTCCGGAAAGTCCACGACTACCGGCCACTTGATCTACAAGCTGAACGGTATTGACCATCGTACGATCGACAAGTACGAGAAAGAAGCCGCTGAGTTGGGCAATGGTTCCTTCAAGTATGCCTGTGTTCTTGACAAGCTCAATGCCGATCGTGAGCGCGGTATCACCATCGACATTGATCTTCGGACGTTCGAGACCGACAAGCTCCAGGTCACCGTCATTGACTCCCCCGGACACCGTGATTTCATCAAGACCATGAATAACTGGACTTCCCATGCCGACTGCGCCATTCTGTCATCGGGCTCCTACCGGTGACTCNAGGCTTGTATCTCAAGGTCGTCATACCCGTAGCCGCTCTGTCGTTTCACCTGTGTGTAAGCACTATTGTTGCGATACATATGGCTCTGCATTGGCCATTCCGTTCACAGATGTAGGAACTCACTTCTGAGAGATGTTCACTTATCTNCCTCTTCCATTCGTTACGGACAATACTCGATCGCGCATAGCACTTTCTACCTCTGTCAGGTGCCAACCCACAGAGAAAGAAGGTCTGTGTTCTAGACTATAAGTCCTTCTATCACAAGCTCTTCCAATTAAATAGTTGTACTGCCTGATATTTAGTCGCTTTCCTACTAAATCGATAACTTCTACTACAATTTCCTTATTCTATATAATGATACTTTTTCTTTTCCCTCCTTCTCTCTAA]


>consensus_8339#1 CCGCATTTCAACCTGCAATCTTTAAACACACACATTATCATCAAAAAGAGAGCACCAAAC CGCCAAAATGGGTGGCGATGAGAAGAGCCATCTTAACGTCGTCGACATCGGACACGTCTA CTCCGGAAAGTCCACGACTACCGGCCACTTGATCTACAAGCTGAACGGTATTGACCATCG TACGATCGACAAGTACGAGAAAGAAGCCGCTGAGTTGGGCAATGGTTCCTTCAAGTATGC CTGTGTTCTTGACAAGCTCAATGCCGATCGTGAGCGCGGTATCACCATCGACATTGATCT TCGGACGTTCGAGACCGACAAGCTCCAGGTCACCGTCATTGACTCCCCCGGACACCGTGA TTTCATCAAGACCATGAATAACTGGACTTCCCATGCCGACTGCGCCATTCTGTCATCGGG CTCCTACCGGTGACTCNAGGCTTGTATCTCAAGGTCGTCATACCCGTAGCCGCTCTGTCG TTTCACCTGTGTGTAAGCACTATTGTTGCGATACATATGGCTCTGCATTGGCCATTCCGT TCACAGATGTAGGAACTCACTTCTGAGAGATGTTCACTTATCTNCCTCTTCCATTCGTTA CGGACAATACTCGATCGCGCATAGCACTTTCTACCTCTGTCAGGTGCCAACCCACAGAGA AAGAAGGTCTGTGTTCTAGACTATAAGTCCTTCTATCACAAGCTCTTCCAATTAAATAGT TGTACTGCCTGATATTTAGTCGCTTTCCTACTAAATCGATAACTTCTACTACAATTTCCT TATTCTATATAATGATACTTTTTCTTTTCCCTCCTTCTCTCTAA



consensusID : consensus_8339#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 644
fasta sequence
                              [CATTCTGGTCATCGGTGCCGGTACCGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTCGCTTTCACCCTGGGTGTTAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACTGCCAAGTGGGCCCAGTCCCGTTACGACGAGATTGTCAAGGAGACCTCCAACTTCTTGAAGAAGATTGGTTTCAACCCTGACTCCGTCCCCTTCGTTCCCATCTCCGGTTTCAACGGTGACCACATGATCTCGGAGTCCGCCGACATCAAGGGCAACATCTCCCCTAACGCTCCTTGGTACAAGGGCTGGACCAAGACCGTCAACAAGGACGGTAAGAAGGAGAAGGTCATCGGTGGTGCTTCGCTCCAGGACGCCATTGACGACGTCACCCCTCCCACTCGTNCCACCGACAAGCCCCTTCGTTTTTCCCTTCACGATGTGTACCAGAACGTGGGTTTTGGGCACATCCCCGGTGGGCCGTATAGAGACTGGTATCCTCAACCCCGTATGGTCGTTACCTTCGCCCCCGCCAAACGTACCCCTGAAGTCAAGTCCGGGGAGATGCACCACCAGCAGCTCCCCGAGGGTGTCCCCTGTGACAACGTCGTTCAACGTCAAGCCGTGTCCG]

[+] EMBL AW155307             [CATTCTGGTCATCGGTGCCGGTACCGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTCGCTTTCACCCTGGGTGTTAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACTGCCAAGTGGGCCCAGTCCCGTTACGACGAGATTGTCAAGGAGACCTCCAACTTCTTGAAGAAGATTGGTTTCAACCCTGACTCCGTCCCCTTCGTTCCCATCTCCGGTTTCAACGGTGACCACATGATCTCGGAGTCCGCCGACATCAAGGGCAACATCTCCCCTAACGCTCCTTGGTACAAGGGCTGGACCAAGACCGTCAACAAGGACGGTAAGAAGGAGAAGGTCATCGGTGGTGCTTCGCTCCAGGACGCCATTGACGACGTCACCCCTCCCACTCGTNCCACCGACAAGCCCCTTCGTTTTTCCCTTCACGATGTGTACCAGAACGTGGGTTTTGGGCACATCCCCGGTGGGCCGTATAGAGACTGGTATCCTCAACCCCGTATGGTCGTTACCTTCGCCCCCGCCAAACGTACCCCTGAAGTCAAGTCCGGGGAGATGCACCACCAGCAGCTCCCCGAGGGTGTCCCCTGTGACAACGTCGTTCAACGTCAAGCCGTGTCCG]


>consensus_8339#2 CATTCTGGTCATCGGTGCCGGTACCGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCA GACCCGTGAGCACGCTCTGCTCGCTTTCACCCTGGGTGTTAGGCAGCTCATTGTTGCCGT CAACAAGATGGACACTGCCAAGTGGGCCCAGTCCCGTTACGACGAGATTGTCAAGGAGAC CTCCAACTTCTTGAAGAAGATTGGTTTCAACCCTGACTCCGTCCCCTTCGTTCCCATCTC CGGTTTCAACGGTGACCACATGATCTCGGAGTCCGCCGACATCAAGGGCAACATCTCCCC TAACGCTCCTTGGTACAAGGGCTGGACCAAGACCGTCAACAAGGACGGTAAGAAGGAGAA GGTCATCGGTGGTGCTTCGCTCCAGGACGCCATTGACGACGTCACCCCTCCCACTCGTNC CACCGACAAGCCCCTTCGTTTTTCCCTTCACGATGTGTACCAGAACGTGGGTTTTGGGCA CATCCCCGGTGGGCCGTATAGAGACTGGTATCCTCAACCCCGTATGGTCGTTACCTTCGC CCCCGCCAAACGTACCCCTGAAGTCAAGTCCGGGGAGATGCACCACCAGCAGCTCCCCGA GGGTGTCCCCTGTGACAACGTCGTTCAACGTCAAGCCGTGTCCG



consensusID : consensus_8339#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 641
fasta sequence
                              [GCATTTCAACCTGCAATCTTTAAACACACACATTATCGTCAAAAAGAGAGCACCAAACCGCCAAAATGGGTAACAAGGAGAAGAGCCATCTTAACGTCGTCGTCATCGGACACGTCGACTCCGGAAAGTCCACGACTACCGGCCACTTGATCTACAAGCTGAAGGGTATTGACCAGCGTACGATCGAGAAGTACGAGAAGGAAGCCGCTGAGTTGGGCAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGCGGTATCACCATCGACATTGCTCTTTGGAAGTTCGAGACCGCCAAGTACCAGGTCACCGTCATTGACGCCCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCGCAGGCCGACTGCGCCATTCTGGTCATCGGTGCCGGGCCGGTGAGTTCGAAGCTGGATCTCCAAGGATGGCCAACCCGGAGCACCTCTGTTCGCTTTACCCTGGTGTAGGCACTCATTGTTGCCTCACAAGATGACACTGCAATGGGCCCATCCTTACGAGAGATTTCAAGAGACCTCAACTTTGAGAAAATGTTCACCTTGCTCGGCCCCTTTTCCATTTCGGTTCACGTGACAATGACTCGAGTCGCCACT]

[+] EMBL AW155366             [GCATTTCAACCTGCAATCTTTAAACACACACATTATCGTCAAAAAGAGAGCACCAAACCGCCAAAATGGGTAACAAGGAGAAGAGCCATCTTAACGTCGTCGTCATCGGACACGTCGACTCCGGAAAGTCCACGACTACCGGCCACTTGATCTACAAGCTGAAGGGTATTGACCAGCGTACGATCGAGAAGTACGAGAAGGAAGCCGCTGAGTTGGGCAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGCGGTATCACCATCGACATTGCTCTTTGGAAGTTCGAGACCGCCAAGTACCAGGTCACCGTCATTGACGCCCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCGCAGGCCGACTGCGCCATTCTGGTCATCGGTGCCGGGCCGGTGAGTTCGAAGCTGGATCTCCAAGGATGGCCAACCCGGAGCACCTCTGTTCGCTTTACCCTGGTGTAGGCACTCATTGTTGCCTCACAAGATGACACTGCAATGGGCCCATCCTTACGAGAGATTTCAAGAGACCTCAACTTTGAGAAAATGTTCACCTTGCTCGGCCCCTTTTCCATTTCGGTTCACGTGACAATGACTCGAGTCGCCACT]


>consensus_8339#3 GCATTTCAACCTGCAATCTTTAAACACACACATTATCGTCAAAAAGAGAGCACCAAACCG CCAAAATGGGTAACAAGGAGAAGAGCCATCTTAACGTCGTCGTCATCGGACACGTCGACT CCGGAAAGTCCACGACTACCGGCCACTTGATCTACAAGCTGAAGGGTATTGACCAGCGTA CGATCGAGAAGTACGAGAAGGAAGCCGCTGAGTTGGGCAAGGGTTCCTTCAAGTATGCCT GGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGCGGTATCACCATCGACATTGCTCTTT GGAAGTTCGAGACCGCCAAGTACCAGGTCACCGTCATTGACGCCCCCGGTCACCGTGATT TCATCAAGAACATGATTACTGGTACTTCGCAGGCCGACTGCGCCATTCTGGTCATCGGTG CCGGGCCGGTGAGTTCGAAGCTGGATCTCCAAGGATGGCCAACCCGGAGCACCTCTGTTC GCTTTACCCTGGTGTAGGCACTCATTGTTGCCTCACAAGATGACACTGCAATGGGCCCAT CCTTACGAGAGATTTCAAGAGACCTCAACTTTGAGAAAATGTTCACCTTGCTCGGCCCCT TTTCCATTTCGGTTCACGTGACAATGACTCGAGTCGCCACT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8339#1      CCGCATTTCAACCTGCAATCTTTAAACACACACATTATCATCAAAA-AGAGAGCACCAAA 59
consensus_8339#3      --GCATTTCAACCTGCAATCTTTAAACACACACATTATCGTCAAAA-AGAGAGCACCAAA 57
consensus_8339#0      CCGCATTTCAACCTGCAATCTTTAAACACACACATTATCATCAAAAGAGAGAGCACCAAA 60
consensus_8339#2      --------------------------------CATTCTGGTCATCGGTGCCGGTACCGGT 28
                                                      **** *  ***     *   * ***   

consensus_8339#1      CCGC-CAAAATGGGTGGCGATGAGAAGAGCCATCTTAACGTCGTCGACATCGGACACGTC 118
consensus_8339#3      CCGC-CAAAATGGGTAACAAGGAGAAGAGCCATCTTAACGTCGTCGTCATCGGACACGTC 116
consensus_8339#0      CCGC-CAAAATGGGTAACAAGGAGAAGAGCCATCTTAACGTCGTCGTCATCGGACACGTC 119
consensus_8339#2      GAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACG-CTCTGCTCGCTTT 87
                        *  * *    ***  *    ** *  ****       *    ** *   *  * * * 

consensus_8339#1      TACTCCGGAAAGTCCACGACTACCGGCCACTTGATCTACAAGCTGAACGGTATTGACCAT 178
consensus_8339#3      GACTCCGGAAAGTCCACGACTACCGGCCACTTGATCTACAAGCTGAAGGGTATTGACCAG 176
consensus_8339#0      GACTCCGGAAAGTCCACGACTACCGGCCACTTGATCTACAAGCTGAAGGGTATTGACCAG 179
consensus_8339#2      CACCCTGGGTGTTAGGCAGCTCATTGTTGCC--GTCAACAAGATGGACACTGCCAAGTGG 145
                       ** * **    *   *  **    *   *    ** ***** ** *   *    *    

consensus_8339#1      CGTACGATCGACAAGTACGAGAAAGAAGCCGCTGAGTTGGGCAATGGTTCCTTCAAGTAT 238
consensus_8339#3      CGTACGATCGAGAAGTACGAGAAGGAAGCCGCTGAGTTGGGCAAGGGTTCCTTCAAGTAT 236
consensus_8339#0      CGTACGATCGAGAAGTACGAGAAGGAAGCCGCTGAGTTGGGCAAGGGTTCCTTCAAGTAT 239
consensus_8339#2      -GCCCAGTC--CCGTTACGAC---GAGATTGTCAAGGAGACCTCCAACTTCTTGAAGAA- 198
                       *  *  **      *****    **    *   **  *  *      * *** *** * 

consensus_8339#1      GCCTGTGTTCTTGACAAGCTCAATGCCGATCGTGAGCGCGGTATCACCATCGACATTGAT 298
consensus_8339#3      GCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGCGGTATCACCATCGACATTGCT 296
consensus_8339#0      GCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGCGGTATCACCATCGACATTGCT 299
consensus_8339#2      GATTGGTTTCAACCCTGACTCCGTCCCCTTCGTT--CCCATCTCCGGTTTCAACGGTGAC 256
                      *  **  ***    *   ***    **   ***   * *     *    ** **  **  

consensus_8339#1      CTTCGGACGTTCGAGACCGACAAGCTCCAGGTCACCGTCAT---TGACTCCCCCGGACAC 355
consensus_8339#3      CTTTGGAAGTTCGAGACCGCCAAGTACCAGGTCACCGTCAT---TGACGCCCCCGGTCAC 353
consensus_8339#0      CTTTGGAAGTTCGAGACCGCCAAGTACCAGGTCACCGTCAT---TGACGCCCCCGGTCAC 356
consensus_8339#2      CACATGATCTCGGAGTCCGCCGACATCAAGGGCAACATCTCCCCTAACGCTCCTTGGTAC 316
                      *    **  *  *** *** * *   * *** ** * **     * ** * **  *  **

consensus_8339#1      CGTGATTTCATCAAGACCATGAATAACTGGACTTCCCATGCCGACTGCGCCATTCTG-TC 414
consensus_8339#3      CGTGATTTCATCAAGAACATGATTACTGGTACTTCGCAGGCCGACTGCGCCATTCTGGTC 413
consensus_8339#0      CGTGATTTCATCAAGAACATGATTACTGGTACTTCGCAGGCCGACTGCGCCATTCTGGTC 416
consensus_8339#2      AAGGGCTGGACCAAGACCGTCAACAA--GGACGGTA-AGAAGGAGAAGGTCATCGGTGGT 373
                         *  *  * ***** * * *  *   * **     *    **    * ***       

consensus_8339#1      ATCGGGCTCC-TACCGGTGA-CTCNAGGCTTGTATCT--CAAGGTCGTCA-TACCCGTAG 469
consensus_8339#3      ATCGGTGCCG-GGCCGGTGAGTTCGAAGCTGGATCTC--CAAGGATGGCC-AACCCGGAG 469
consensus_8339#0      ATCGGTGCCGGTACCGGTGAGTTCGAGGCTGGTATCTTCCAAGATGGGCAGAACCCGAGG 476
consensus_8339#2      GCTTCGCTCCAGGACGCCA---TTGACGACGTCACCCCTCCCACTCGTNC-CACCGACAA 429
                              *     **      *  * *           *      *     ***     

consensus_8339#1      C-CGCTCTG---T-CGTTTCACC-TGTGTGTAAGCA-CT-ATTGTTGCGAT--ACAT-AT 518
consensus_8339#3      C-ACCTCTG---TTCGCTTTACC-CTGGTGTAGGCA-CTCATTGTTGCCTC--ACAAGAT 521
consensus_8339#0      CACCCTCTGC--TCCTTTTCACCCTGTGTGTAGGCAGCTCATTGTTGCCGTCAACAAGAT 534
consensus_8339#2      GCCCCTTCGTTTTTCCCTTCACGATGTGTACCAGAACGTGGGTTTTGGGC---ACATCCC 486
                          **  *   * *  ** **     **    * *  *   * ***      ***    

consensus_8339#1      GG-CTCTGC--ATTGG--CCATTCCGTTCAC----AGATGT---AGGAACTC----ACTT 562
consensus_8339#3      GA-CACTGC--AATGGGCCCATCCTTACGAG----AGATTTCAAGAGACCTC----AACT 570
consensus_8339#0      GGACACTGCCAAGTGGGCCCAGTCCCGTTACGACGAGATTGTCAAGGAGACCTCCAACTT 594
consensus_8339#2      CGGTGGGCCGTATAGAGACTGGTATCCTCAACCCCGTATGGTCGTTACCTTC----GCCC 542
                              *  *  *   *          *       **            *        

consensus_8339#1      CTGAGAGA-TGTTCACTTATCTNCCTCTTCCATTCGTTACGGACAATACTCGATCGCGCA 621
consensus_8339#3      TTGAGAAAATGTTCACCTTGCTCGGCCCCTTTTCCATTTCGGTT--CACGTGACAATGAC 628
consensus_8339#0      CTTGAAGAAGATTGGTTTAACCCTGACTCTG--TCCTTNCGTTCCATCTCCGGTTTCAAC 652
consensus_8339#2      CCGCCAAA-CGTACCCCTGAAGTCAAGTCCG----GGGAGATGCACCAC-CAGCAGCTCC 596
                           * *   *     *                                          

consensus_8339#1      TAGCACTTTCTACCTCTGTCAGGTGCCAACCCACAGAGAAAGAAGGTCTGT---GTTCTA 678
consensus_8339#3      TCG-AGTCGCCACT---------------------------------------------- 641
consensus_8339#0      GGTGACCACATGATCTCGGAGTCCGCCGACATCAAGGGCAACATCTCCCCTAACGCTCCT 712
consensus_8339#2      CCGAGGGTGTCCCCTGTGACAA-CGTCGTTCAAC-GTCAAGCCGTGTCCG---------- 644
                                                                                  

consensus_8339#1      GACTATAAGTCCTTCT-----ATCACAAGCTCTTCCAATTAAATAGTTGTACTGCCTGAT 733
consensus_8339#3      ------------------------------------------------------------
consensus_8339#0      TGGTACAAGGGCTGGACCAAGACCGTCAACAAGGACGGTAAGAAGGAGAAGGTCATCGGT 772
consensus_8339#2      ------------------------------------------------------------
                                                                                  

consensus_8339#1      ATTTAGTCGCTTTCCTACTAAATCGATAACTTCTACTACAATTTCCTTATTCTATATAAT 793
consensus_8339#3      ------------------------------------------------------------
consensus_8339#0      GGTGCTTCGCTCCAGGACGCCATTGACGACGTNACCCCC--TCCACTCGTCCCACCGAGC 830
consensus_8339#2      ------------------------------------------------------------
                                                                                  

consensus_8339#1      GATACTTTTTCT-TTTCCCTCCTTCTCTCTAA---------------------------- 824
consensus_8339#3      ------------------------------------------------------------
consensus_8339#0      AAGGCCCTTCGGGTTTCCCTTCAGGAATGTATACAAAATCGGTGGTTATGGCAACAATCC 890
consensus_8339#2      ------------------------------------------------------------
                                                                                  

consensus_8339#1      ------------------------------------------------------------
consensus_8339#3      ------------------------------------------------------------
consensus_8339#0      CGGGTGGGCCGGTATCGAGACTGGTATCCTTAAGCCCGGTATGGTCGGTACCTTCGCCCC 950
consensus_8339#2      ------------------------------------------------------------
                                                                                  

consensus_8339#1      ------------------------------------------------------------
consensus_8339#3      ------------------------------------------------------------
consensus_8339#0      CGGCAACGTCACCACTGAAGTCAAGTCCGTGGAGAAGCACNACCAGCAGCTTCCCGAGGT 1010
consensus_8339#2      ------------------------------------------------------------
                                                                                  

consensus_8339#1      ------------------------------------------------------------
consensus_8339#3      ------------------------------------------------------------
consensus_8339#0      GTCCCCCGTAGACACGTTGGTTCAACGTCAAGAACGTGTCCGGCAGGACATTCNCCGTGG 1070
consensus_8339#2      ------------------------------------------------------------
                                                                                  

consensus_8339#1      ---------------------
consensus_8339#3      ---------------------
consensus_8339#0      AACGTCCTGGGGACAGCAGAC 1091
consensus_8339#2      ---------------------
                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)