These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8344#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1086 fasta sequence [ACGCCCCCGCCATGGCTCTCCCCACCACCTCCCCCCTCGCCGCGGCCGCAGCGAGGCCCTGCGCGTTCCCGACGCCGTGGAGATGTCGCTCGCCCCCTCTTCGCCGCCTCCCGCACGTCTCCTGCCAGGCGAACCGAGGGGGTTCTCGGGACGGCAATTCGTTGAGCACCTCGGCGGCGGCGGCGGCGGCGGCGTCGCCGCCGCCGAGGTGGCGTGCCGCGGTGTCCGCGGCGCTCGCGGCGGCGATTGTGTCCGCGGCGCCGGCCTACGCGGATCTTAACAAGTTCGAGGCGGAGCAGCGTGGGGAGTTCGGCATTGGCTCCGCTGCGCAGTTTGGGTCGGCCGACCTCAAGAAGGCCGTCCATGTTAATGAGAACTTCAGGCGGGCAAACTTCACTGCTGCTGATATGAGGGAGTCAAATTTCAGTGGTTCCACATTCAATGGTGCCTATCTTGAAAAGGCTGTTGCTTATAGAGCAAATTTTACTGGTGCAGATTTGAGTGATACCTTGATGGATCGCATGGTGCTCAATGAAGCTAACCTTACAAATGCTGTGCTTGTACGGTCAGTCCTTACGCGTAGCGATCTTGGTGGAGCAATCATTGAAGGTGCAGACTTCAGTGATGCTGTTATTGACCTGACACAGAAACAGGCTTTGTGCAAATATGCAAATGGAACAAACCCTTTAACAGGGGTCAGCACACGGAAAAGCCTTGGATGCGGCAACAGTCGCCGAAATGCATATGGGAGCCCTTCCTCCCCTCTTTTGAGTGCTCCACCACCCAAACTTCTGGACCGTGATGGTTTCTGCGATGAAGCAACTGGTATGTGTGACGCAAAATAAAAGAAGAATTATCCAGCATACTGCAGAAATTGAGCACTGAATGCTGTATATACATTGGAGACTGAACAAAAGACAAAGCAGATCGGTTCAGGATTCAGAGAAATTGTTCTCGTTTTGCGAATGTTGTAGCATTGCAGAGAGATCAGGTAAACTAGGACTGTAGACAAGTTATGTGTACTGAACGACTGATGCCGTATATATATGTATATCAAAGTGTTGCCGAATTCAAAACCTTTAAAGA] [+] EMBL AK068423 [ACGCCCCCGCCATGGCTCTCCCCACCACCTCCCCCCTCGCCGCGGCCGCAGCGAGGCCCTGCGCGTTCCCGACGCCGTGGAGATGTCGCTCGCCCCCTCTTCGCCGCCTCCCGCACGTCTCCTGCCAGGCGAACCGAGGGGGTTCTCGGGACGGCAATTCGTTGAGCACCTCGGCGGCGGCGGCGGCGGCGGCGTCGCCGCCGCCGAGGTGGCGTGCCGCGGTGTCCGCGGCGCTCGCGGCGGCGATTGTGTCCGCGGCGCCGGCCTACGCGGATCTTAACAAGTTCGAGGCGGAGCAGCGTGGGGAGTTCGGCATTGGCTCCGCTGCGCAGTTTGGGTCGGCCGACCTCAAGAAGGCCGTCCATGTTAATGAGAACTTCAGGCGGGCAAACTTCACTGCTGCTGATATGAGGGAGTCAAATTTCAGTGGTTCCACATTCAATGGTGCCTATCTTGAAAAGGCTGTTGCTTATAGAGCAAATTTTACTGGTGCAGATTTGAGTGATACCTTGATGGATCGCATGGTGCTCAATGAAGCTAACCTTACAAATGCTGTGCTTGTACGGTCAGTCCTTACGCGTAGCGATCTTGGTGGAGCAATCATTGAAGGTGCAGACTTCAGTGATGCTGTTATTGACCTGACACAGAAACAGGCTTTGTGCAAATATGCAAATGGAACAAACCCTTTAACAGGGGTCAGCACACGGAAAAGCCTTGGATGCGGCAACAGTCGCCGAAATGCATATGGGAGCCCTTCCTCCCCTCTTTTGAGTGCTCCACCACCCAAACTTCTGGACCGTGATGGTTTCTGCGATGAAGCAACTGGTATGTGTGACGCAAAATAAAAGAAGAATTATCCAGCATACTGCAGAAATTGAGCACTGAATGCTGTATATACATTGGAGACTGAACAAAAGACAAAGCAGATCGGTTCAGGATTCAGAGAAATTGTTCTCGTTTTGCGAATGTTGTAGCATTGCAGAGAGATCAGGTAAACTAGGACTGTAGACAAGTTATGTGTACTGAACGACTGATGCCGTATATATATGTATATCAAAGTGT ] [+] EMBL CB683185 [ CAGGCGAACCGAGGGGGTTCTCGGGACGGCAATTCGTTGAGCACCTCGGCGGCGGCGGCGGCGGCGGCGTCGCCGCCGCCGAGGTGGCGTGCCGCGGTGTCCGCGGCGCTCGCGGCGGCGATTGTGTCCGCGGCGCCGGCCTACGCGGATCTTAACAAGTTCGAGGCGGAGCAGCGTGGGGAGTTCGGCATTGGCTCCGCTGCGCAGTTTGGGTCGGCCGACCTCAAGAAGGCCGTCCATGTTAATGAGAACTTCAGGCGGGCAAACTTCACTGCTGCTGATATGAGGGAGTCAAATTTCAGTGGTTCCACATTCAATGGTGCCTATCTTGAAAAGGCTGTTGCTTATAGAGCAAATTTTACTGGTGCAGATTTGAGTGATACCTTGATGGATCGCATGGTGCTCAATGAAGCTAACCTTACAAATGCTGTGCTTGTACGGTCAGTCCTTACGCGTAGCGATCTTGGTGGAGCAATCATTGAAGGTGCAGACTTCAGTGATGCTGTTATTGACCTGACACAGAAACAGGCTTTGTGCAAATATGCAAATGGAACAAACCCTTTAACAGGGGTCAGCACACGGAAAAGCCTTGGATGCGGCAACAGTCGCCGAAATGCATATGGGAGCCCTTCCTCCCCTCTTTTGAGTGCTCCACCACCCAAACTTCTGGACCGTGATGGTTTCTGCGATGAAGCAACTGGTATGTGTGACGCAAAATATAAGAAGAATTATCCAGCATACTGCAGAAATTGAGCACTGAATGCTGTATAT ] [-] EMBL CB683596 [ GTTTGGGTCGGCCGACCTCAAGAAGGCCGTCCATGTTAATGAGAACTTCAGGCGGGCAAACTTCACTGCTGCTGATATGAGGGAGTCAAATTTCAGTGGTTCCACATTCAATGGTGCCTATCTTGAAAAGGCTGTTGCTTATAGAGCAAATTTTACTGGTGCAGATTTGAGTGATACCTTGATGGATCGCATGGTGCTCAATGAAGCTAACCTTACAAATGCTGTGCTTGTACGGTCAGTCCTTACGCGTAGCGATCTTGGTGGAGCAATCATTGAAGGTGCAGACTTCAGTGATGCTGTTATTGACCTGACACAGAAACAGGCTTTGTGCAAATATGCAAATGGAACAAACCCTTTAACAGGGGTCAGCACACGGAAAAGCCTTGGATGCGGCAACAGTCGCCGAAATGCATATGGGAGCCCTTCCTCCCCTCTTTTGAGTGCTCCACCACCCAAACTTCTGGACCGTGATGGTTTCTGCGATGAAGCAACTGGTATGTGTGACGCAAAATAAAAGAAGAATTATCCAGCATACTGCAGAAATTGAGCACTGAATGCTGTATATACATTGGAGACTGAACAAAAGACAAAGCAGATCGGTTCAGGATTCAGAGAAATTGTTCTCGTTTTGCGAATGTTGTAGCATTGCAGAGAGATCAGGTAAACTAGGACTGTAGACAAGTTATGTGTACTGAACGACTGATGCCGTATAAAGATGTATATCAAAGTGTTGCCGAATTCAAAACCTTTAAAGA] [-] EMBL OSS12335A [ GGTATGTGTGACGCNAAATAAAAGAAGAATTATCCAGCATACTGCAGAAATTGAGCACTGAATGCTGTATATACATTGGAGACTGAACAAAAGACAAAGCAGATCGGTTCAGGATNCAGAGAAATTGNTCTCGTTTTGCGAATGTTGTAGCATTGCAGAGAGATCAGGTAAACTAGGACTGTAGACAAGTTATGTGTACTGAACGACTGATGCCGTATATATATGT ] consensusID : consensus_8344#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 781 fasta sequence [TAAGTGTCATGGAAGAGAAAACCGAATATTCAGACAAGAGAATCTTGACATGAACTTGACTATTATCTCCTGGCTGGTATGTCTCATGTCTTCGGGAAGGAAGTTCCATGTGCTCAACTGCTAACAACACAATCTTTAGCTTGAACAAACATTGCATAATCCTAATGTCCCGCATCTGTGACATATGAATTTGAAGTTGAGAACCGGTGCCATACTGTTTCAGCAGTGGTCAAAACTAATTTTGGATGATACATAAAAGAATCACCATATGATGCCATGTTGGGGTCTATCTTCAATGTTTTGCATGAGTTCTCTGATTCTCTTTTATACAGAAAACAAAAGATAATCCTGATAACTAATATTAGGCAAACTGGTATGTAGGCTTTGTGCAAATATGCAAATGGAACAAACCCTTTAACAGGGGTCAGCACACGGAAAAGCCTTGGATGCGGCAACAGTCGCCGAAATGCATATGGGAGCCCTTCCTCCCCTCTTTTGAGTGCTCCACCACCCAAACTTCTGGACCGTGATGGTTTCTGCGATGAAGCAACTGGTATGTGTGACGCAAAATAAAAGAAGAATTATCCAGCATACTGCAGAAATTGAGCACTGAATGCTGTATATACATTGGAGACTGAACAAAAGACAAAGCAGATCGGTTCAGGATTCAGAGAAATTGTTCTCGTTTTGCGAATGTTGTAGCATTGCAGAGAGATCAGGTAAACTAGGACTGTAGACAAGTTATGTGTACTGAACGACTGATGCAGGATATATATGTATA] [-] EMBL CB680795 [TAAGTGTCATGGAAGAGAAAACCGAATATTCAGACAAGAGAATCTTGACATGAACTTGACTATTATCTCCTGGCTGGTATGTCTCATGTCTTCGGGAAGGAAGTTCCATGTGCTCAACTGCTAACAACACAATCTTTAGCTTGAACAAACATTGCATAATCCTAATGTCCCGCATCTGTGACATATGAATTTGAAGTTGAGAACCGGTGCCATACTGTTTCAGCAGTGGTCAAAACTAATTTTGGATGATACATAAAAGAATCACCATATGATGCCATGTTGGGGTCTATCTTCAATGTTTTGCATGAGTTCTCTGATTCTCTTTTATACAGAAAACAAAAGATAATCCTGATAACTAATATTAGGCAAACTGGTATGTAGGCTTTGTGCAAATATGCAAATGGAACAAACCCTTTAACAGGGGTCAGCACACGGAAAAGCCTTGGATGCGGCAACAGTCGCCGAAATGCATATGGGAGCCCTTCCTCCCCTCTTTTGAGTGCTCCACCACCCAAACTTCTGGACCGTGATGGTTTCTGCGATGAAGCAACTGGTATGTGTGACGCAAAATAAAAGAAGAATTATCCAGCATACTGCAGAAATTGAGCACTGAATGCTGTATATACATTGGAGACTGAACAAAAGACAAAGCAGATCGGTTCAGGATTCAGAGAAATTGTTCTCGTTTTGCGAATGTTGTAGCATTGCAGAGAGATCAGGTAAACTAGGACTGTAGACAAGTTATGTGTACTGAACGACTGATGCAGGATATATATGTATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8344#0 ACGCCCCCGCCATGGCTCTCCCCACCACCTCCCCCCTCGCCGCGGCCGCAGCGAGGCCCT 60 consensus_8344#1 ------------------------------------------------------------ consensus_8344#0 GCGCGTTCCCGACGCCGTGGAGATGTCGCTCGCCCCCTCTTCGCCGCCTCCCGCACGTCT 120 consensus_8344#1 ------------------------------------------------------------ consensus_8344#0 CCTGCCAGGCGAACCGAGGGGGTTCTCGGGACGGCAATTCGTTGAGCACCTCGGCGGCGG 180 consensus_8344#1 ------------------------------------------------------------ consensus_8344#0 CGGCGGCGGCGGCGTCGCCGCCGCCGAGGTGGCGTGCCGCGGTGTCCGCGGCGCTCGCGG 240 consensus_8344#1 ------------------------------------------------------------ consensus_8344#0 CGGCGATTGTGTCCGCGGCGCCGGCCTACGCGGATCTTAACAAGTTCGAGGCGGAGCAGC 300 consensus_8344#1 --------------TAAGTGTCATGGAAGAGAAAACCGAATA--TTCAGACAAGAGAATC 44 * * * * * * ** * *** *** * * consensus_8344#0 GTGG---GGAGTTCGGCATTGGCTCCGCTGCGCAGTTTGGGTCGGCCGACCTCAAGAAGG 357 consensus_8344#1 TTGACATGAACTTGACTATTATCTC--CTGGCTGGTATGTCTCA--TGTCTTCGGGAAGG 100 ** * * ** *** *** *** ** ** ** * * ** ***** consensus_8344#0 CCGT-CCATGTTAATGAGAACTTCAGGCGGGCAAACTTCA-CTGCTGCTGATATGAGGGA 415 consensus_8344#1 AAGTTCCATGTGCTCAACTGCT--AACAACACAATCTTTAGCTTGAACAAACATTGCATA 158 ** ****** * ** * *** *** * ** * * ** * consensus_8344#0 GTCAAATTTCAGTGGTTCCACATTCAATGGTGCCTATCTTGAAAAG-GCTGT--TGCTTA 472 consensus_8344#1 ATCCTAATGTCCCGCATCTGTGACATATGAATTTGAAGTTGAGAACCGGTGCCATACTGT 218 ** * * * ** *** * **** ** * ** * ** consensus_8344#0 TAGAGCAAATTTTACTGGTGCAGATTTGAGTGATACCTTGATGGATCGC---ATGGTGCT 529 consensus_8344#1 TTCAGCAGTGGTCA--AAACTAATTTTGGATGATACATAAAAGAATCACCATATGATGCC 276 * **** * * * **** ****** * * * *** * *** *** consensus_8344#0 -CAATGAAGCTAACCTTACAAATGCTGTGCTTGTACGGTCAGTCCTTACGCGTAGCGATC 588 consensus_8344#1 ATGTTGGGGTCTATCTT--CAATGTTTTGCATGAGTTCTCTGATTCT-----------CT 323 ** * * *** **** * *** ** ** * * consensus_8344#0 TTGGTGGAGCAATCATTGAAGGTGCAGACTTCAGTGATGCTGTTATTGACCTGACACAGA 648 consensus_8344#1 TTTATACAGAAAACA--AAAGAT---AATCCTGATAA--CTAATATTAGGCAAACTGGTA 376 ** * ** ** ** *** * * * * ** **** * ** * consensus_8344#0 AACAGGCTTTGTGCAAATATGCAAATGGAACAAACCCTTTAACAGGGGTCAGCACACGGA 708 consensus_8344#1 TGTAGGCTTTGTGCAAATATGCAAATGGAACAAACCCTTTAACAGGGGTCAGCACACGGA 436 ********************************************************* consensus_8344#0 AAAGCCTTGGATGCGGCAACAGTCGCCGAAATGCATATGGGAGCCCTTCCTCCCCTCTTT 768 consensus_8344#1 AAAGCCTTGGATGCGGCAACAGTCGCCGAAATGCATATGGGAGCCCTTCCTCCCCTCTTT 496 ************************************************************ consensus_8344#0 TGAGTGCTCCACCACCCAAACTTCTGGACCGTGATGGTTTCTGCGATGAAGCAACTGGTA 828 consensus_8344#1 TGAGTGCTCCACCACCCAAACTTCTGGACCGTGATGGTTTCTGCGATGAAGCAACTGGTA 556 ************************************************************ consensus_8344#0 TGTGTGACGCAAAATAAAAGAAGAATTATCCAGCATACTGCAGAAATTGAGCACTGAATG 888 consensus_8344#1 TGTGTGACGCAAAATAAAAGAAGAATTATCCAGCATACTGCAGAAATTGAGCACTGAATG 616 ************************************************************ consensus_8344#0 CTGTATATACATTGGAGACTGAACAAAAGACAAAGCAGATCGGTTCAGGATTCAGAGAAA 948 consensus_8344#1 CTGTATATACATTGGAGACTGAACAAAAGACAAAGCAGATCGGTTCAGGATTCAGAGAAA 676 ************************************************************ consensus_8344#0 TTGTTCTCGTTTTGCGAATGTTGTAGCATTGCAGAGAGATCAGGTAAACTAGGACTGTAG 1008 consensus_8344#1 TTGTTCTCGTTTTGCGAATGTTGTAGCATTGCAGAGAGATCAGGTAAACTAGGACTGTAG 736 ************************************************************ consensus_8344#0 ACAAGTTATGTGTACTGAACGACTGATGCCGTATATATATGTATATCAAAGTGTTGCCGA 1068 consensus_8344#1 ACAAGTTATGTGTACTGAACGACTGATGCAGGATATATATGTATA--------------- 781 ***************************** * ************* consensus_8344#0 ATTCAAAACCTTTAAAGA 1086 consensus_8344#1 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||