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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8348#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1775 fasta sequence
[TTTTCTCGAAGCGCTTCCCTTCCCTTCGCTTCCCCGCACAATCTGCAAACGCGCCACCCGTCGCTCATAAACCCCTCTCCCTCTCTCTCTGGCCGACACATGGACCCCACCGCTCCCAACTCCGGCGACGCCAACGGCGGCGCGGCCGCCGACGCCACCGCCCCGTCCAACACCACCGTCACCCTCCCGCCGCTCACCCTCCGCGACGTGCCCCTGCTCCCGTCGGCGGCGGCGGCGACCGACACGATCCCCAACCCGATCTCCCGCCACCCCTACTTCCACCCGCCGGCCACCTTCTACATCTCCCCGGGTGACGTCTCCCTCCGCCACGCCTTCTTCGACCTCGCCTCCGCGTCGCCGTCCCCGCTCGTCGCCTACCGCCGCGCGGGGCCGCGCGCGGGGGTCGCCGTGGACCCCGCCCGCGCGCGCGCCGCGGTCGTCACCTGCGGGGGGCTCTGCCCGGGCCTCAACACCGTCCTCAGGGAGCTCGTCGTCGGCCTCCGGGAGCTCTACGGCGTCCGCGACGTCTTCGGCGTCGCCGCCGGCTACCGCGGGTTCTACGGCCCCGACGCCGACCACGCCCGCCTGGACCTGGCCGCCGTCGACGACTGGCACAAGAAGGGCGGCACCGTGCTCAAGACCACCCGTGGTGGCTTTGATCTCAACAAGATCGTTGACGGCATCGTCGCGCGCGGGTATACGCAGGTTTATGCAATTGGAGGGGATGGAACAATGAGAGGAGCTGTGGCCATCTTCAACGAGTTTAAGCGCCGTGGTTTGAACATTTCTATTACAGGGATCCCGAAAACTGTGGACAATGATATCGGCATCATAGACAGGTCATTTGGGTTCCAAACCGCAGTGGAGATTGCTCAGCAGGCAATCGACGCAGCACATGTCGAGGCTGTGAGCGCCGTGAATGGCATTGGACTTGTCAAACTTATGGGCAGGAGCACAGGCCACATTGCTCTTCATGCCACCCTGAGCAGCCGCGATGTTGACTGCTGTTTGATTCCTGAGGTTGATTTCTATCTTGAAGGAAAGGGGGGCCTGTTTGAGTTCTTGTATGAAAGGATAAAACAGAAGGGACATGCTGTTGTCGTTGTTGCTGAAGGTGCTGGTCAGGAATTGATTCCAAGGACTGACGATCAAAAGCGGGAGCAGGAC-GAGTCCGGCAACATTGTGTTCCTTGATGTGGGTCCCTGGTTAAAATCTGAGCTGGGTAAATGGTGGAAGAGAGAACACCCAAGCGAGTTGTTCACTGTGAAGTATATCGATCCCACTTACATGATACGAGCTGTTCCAGCAAATGCCACTGACAATCTGTACTGTACATTGTTGGCACATTCGGCGATCCATGGGATCATGGCTGGGTACACTGGCTTCGTCCCTGGCCCGATTAATGGAAACTATAGCTACATACCGCTGGAAGATGTTGCTGTGGCGAAGAACCCGGTGGATGTGAATGATCACAAATGGGCATGGGTTAGATCAGTCACAAACCAACCAGATTTCATGAAGCCAAAATACTAAGACCAAAAGTGCTGTTACTGGACATGGTTGTATGACTTTTTCTCCCTGGAGCCTTGACACGTTAAGCTTGATTTCTTTCTATCCAGTTTCTTCTCTTGTTATGCCGATCTATCTATAAGATGTTAGGTATTCTGATCTCCCTGGTTTGTGTTTGTGTGCACTTGAAATCGTGTTAGCAGGTATTGCTGTAAATCTGTAGTACATAAATAAATGAAGTGGCAGGAAATGTTGNTCTCCAAAAA]
[+] EMBL AK071065 [TTTTCTCGAAGCGCTTCCCTTCCCTTCGCTTCCCCGCACAATCTGCAAACGCGCCACCCGTCGCTCATAAACCCCTCTCCCTCTCTCTCTGGCCGACACATGGACCCCACCGCTCCCAACTCCGGCGACGCCAACGGCGGCGCGGCCGCCGACGCCACCGCCCCGTCCAACACCACCGTCACCCTCCCGCCGCTCACCCTCCGCGACGTGCCCCTGCTCCCGTCGGCGGCGGCGGCGACCGACACGATCCCCAACCCGATCTCCCGCCACCCCTACTTCCACCCGCCGGCCACCTTCTACATCTCCCCGGGTGACGTCTCCCTCCGCCACGCCTTCTTCGACCTCGCCTCCGCGTCGCCGTCCCCGCTCGTCGCCTACCGCCGCGCGGGGCCGCGCGCGGGGGTCGCCGTGGACCCCGCCCGCGCGCGCGCCGCGGTCGTCACCTGCGGGGGGCTCTGCCCGGGCCTCAACACCGTCCTCAGGGAGCTCGTCGTCGGCCTCCGGGAGCTCTACGGCGTCCGCGACGTCTTCGGCGTCGCCGCCGGCTACCGCGGGTTCTACGGCCCCGACGCCGACCACGCCCGCCTGGACCTGGCCGCCGTCGACGACTGGCACAAGAAGGGCGGCACCGTGCTCAAGACCACCCGTGGTGGCTTTGATCTCAACAAGATCGTTGACGGCATCGTCGCGCGCGGGTATACGCAGGTTTATGCAATTGGAGGGGATGGAACAATGAGAGGAGCTGTGGCCATCTTCAACGAGTTTAAGCGCCGTGGTTTGAACATTTCTATTACAGGGATCCCGAAAACTGTGGACAATGATATCGGCATCATAGACAGGTCATTTGGGTTCCAAACCGCAGTGGAGATTGCTCAGCAGGCAATCGACGCAGCACATGTCGAGGCTGTGAGCGCCGTGAATGGCATTGGACTTGTCAAACTTATGGGCAGGAGCACAGGCCACATTGCTCTTCATGCCACCCTGAGCAGCCGCGATGTTGACTGCTGTTTGATTCCTGAGGTTGATTTCTATCTTGAAGGAAAGGGGGGCCTGTTTGAGTTCTTGTATGAAAGGATAAAACAGAAGGGACATGCTGTTGTCGTTGTTGCTGAAGGTGCTGGTCAGGAATTGATTCCAAGGACTGACGATCAAAAGCGGGAGCAGGAC GAGTCCGGCAACATTGTGTTCCTTGATGTGGGTCCCTGGTTAAAATCTGAGCTGGGTAAATGGTGGAAGAGAGAACACCCAAGCGAGTTGTTCACTGTGAAGTATATCGATCCCACTTACATGATACGAGCTGTTCCAGCAAATGCCACTGACAATCTGTACTGTACATTGTTGGCACATTCGGCGATCCATGGGATCATGGCTGGGTACACTGGCTTCGTCCCTGGCCCGATTAATGGAAACTATAGCTACATACCGCTGGAAGATGTTGCTGTGGCGAAGAACCCGGTGGATGTGAATGATCACAAATGGGCATGGGTTAGATCAGTCACAAACCAACCAGATTTCATGAAGCCAAAATACTAAGACCAAAAGTGCTGTTACTGGACATGGTTGTATGACTTTTTCTCCCTGGAGCCTTGACACGTTAAGCTTGATTTCTTTCTATCCAGTTTCTTCTCTTGTTATGCCGATCTATCTATAAGATGTTAGGTATTCTGATCTCCCTGGTTTGTGTTTGTGTGCACTTGAAATCGTGTTAGCAGGTATTGCTGTAAATCTGTAGTACATAAATAAATGAAGTGGCAGGAAAT ]
[+] EMBL C28403 [ TGGACAATNATATCGGCATCATAGACAGGTCATTTGGGTTCCAAACCGCAGTGGAGATTGCTCAGCAGGCAATCGACGCAGCACATGTCGAGGCTGTGAGCGCCGTGAATGGCATTGGACTTGTCAAACTTATGGGCAGGAGCACAGGCCACATTGCTCTTCATGCCACCCTGAGCAGCCGCGATGTTGACTGCTGTTTGATTCCTGAGGTTGATTTCTATCTTGAAGGAAAGGGGGGCCTGTTTGAGTTCTTGTATGAAAGGATAAAACAGAAGGGACATNCTGTTGTCGTTGTTGCTGAAGGTGCTGGTCAGGAATTGATTCCAAGGACTGACGATCAAAAGCGGGA CAGGACGGAGTC ]
[+] EMBL CA767486 [ TGTTGTCGTTGTTGCTGAAGGTGCTGGTCAGGAATTGATTCCAAGGACTGACGATCAAAAGCGGGAGCAGGAC GAGTCCGGCAACATTGTGTTCCTTGATGTGGGTCCCTGGTTAAAATCTGAGCTGGGTAAATGGTGGAAGAGAGAACACCCAAGCGAGTTGTTCACTGTGAAGTATATCGATCCCACTTACATGATACGAGCTGTTCCAGCAAATGCCACTGACAATCTGTACTGTACATTGTTGGCACATTCGGCGATCCATGGGATCATGGCTGGGTACACTGGCTTCGTCCCTGGCCCGATTAATGGAAACTATAGCTACATACCGCTGGAAGATGTTGCTGTGGCGAAGAACCCGGTGGATGTGAATGATCACAAATGGGCATGGGTTAGATCAGTCACAAACCAACCAGATTTCATGAAGCCGAAATACTAAGACCAAAAGTGCTGTTACTGGACATGGTTGTATGACTTTTTCTCCCTGGAGCCTTGACACGTTAAGCTTGATTTCTTTCTATCCAGTTTCTTCTCTTGTTATGCCGATCTATCTATAAGATGTTAGGTATTCTGATCTCCCTGGTTTGTGTTTGTGTGCACTTGAAATCGTGTTAGCAGGTATTGCTGTAAATCTGTAGTACATAAATAAATGAAGTGGCAGGAAATGTTGNTCT ]
[+] EMBL AU165152 [ tCCGCTGGAAGATGTTGCTGTGGCGAAGAACCCGGTGGATGTGAATGATCACAAATGGGTATGGGTTAGATCAGTCACAAACCAACCAGATTTCATGAAGCCAAAATACTAAGACCAAAAGTGCTGTTACTGGACATGGTTGTATGACTTTTTCTCCCTGGAGCCTTGACACGTTAAGCTTGATTTCTTTCTATCCAGTTTCTTCTCTTGTTATGCCGATCTATCTATAAGATGTTAGGTATTCTGATCTCCCTGGTTTGTGTTTGTGTGCACTTGAAATCGTGTTAGCAGGTATTGCTGTAAATCTGTAGTACATAAATAAATGAAGTGGCAGGAAATGTTGTTCTCCAAAAA]
consensusID : consensus_8348#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence
[TGTTGCTGAAGGTNCTGGTCAGGAATTGATNCCAAGGACTGACGATCAAAAGCGGGANCAGGACGAGTCCGGCAACATTGTGTNCCTTGATGTGGGTCCCTGGTTAAAATCTGAGCTGGGTAAATGGTGGAAGAGAGAACCCCCAAGCGAGTTNTTCACTGTGAAGTATATCGATCCCACTTACATGATACGAGCTGTTCCAGCAAATGCCACTGACAATCTGTACTGTACATTGTTGGCACATTCGGCGATCCATGGGATCATGGCTGGGTACACTGGCTTCGTCCCTGGCCCGATTAATGGAAACTATAGCTACATACCGCTGGAAGATNTTGCTNTGGCGAAGAACCCGGTGGATGTGAATGATCACAAATGGGCATGGGTTAGATCAGTCACAAACCAACCAGATTTCATGAAGCCAAAATACTAAGNCCAAAAGTGCTGTTACTGGACATGGTTGTATGACTTTTTCTCCCTGGAGCCTTGACACGTTAAGCTTGATTTCTTTCTATCCAGTTTCTTCTCTTGTTATGCCGATCTATCTATAAGATGTTAGGTATTCTGATCTCCCTGGTTTGTGTTTGTGTGCACTTGAAATCGTGTTAGCAGGTATTGCTGTAAATCTGTAGTACATAAATAAATGAAGTGGCAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU085824 [TGTTGCTGAAGGTNCTGGTCAGGAATTGATNCCAAGGACTGACGATCAAAAGCGGGANCAGGACGAGTCCGGCAACATTGTGTNCCTTGATGTGGGTCCCTGGTTAAAATCTGAGCTGGGTAAATGGTGGAAGAGAGAACCCCCAAGCGAGTTNTTCACTGTGAAGTATATCGATCCCACTTACATGATACGAGCTGTTCCAGCAAATGCCACTGACAATCTGTACTGTACATTGTTGGCACATTCGGCGATCCATGGGATCATGGCTGGGTACACTGGCTTCGTCCCTGGCCCGATTAATGGAAACTATAGCTACATACCGCTGGAAGATNTTGCTNTGGCGAAGAACCCGGTGGATGTGAATGATCACAAATGGGCATGGGTTAGATCAGTCACAAACCAACCAGATTTCATGAAGCCAAAATACTAAGNCCAAAAGTGCTGTTACTGGACATGGTTGTATGACTTTTTCTCCCTGGAGCCTTGACACGTTAAGCTTGATTTCTTTCTATCCAGTTTCTTCTCTTGTTATGCCGATCTATCTATAAGATGTTAGGTATTCTGATCTCCCTGGTTTGTGTTTGTGTGCACTTGAAATCGTGTTAGCAGGTATTGCTGTAAATCTGTAGTACATAAATAAATGAAGTGGCAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8348#0 TTTTCTCGAAGCGCTTCCCTTCCCTTCGCTTCCCCGCACAATCTGCAAACGCGCCACCCG 60
consensus_8348#1 ------------------------------------------------------------
consensus_8348#0 TCGCTCATAAACCCCTCTCCCTCTCTCTCTGGCCGACACATGGACCCCACCGCTCCCAAC 120
consensus_8348#1 ------------------------------------------------------------
consensus_8348#0 TCCGGCGACGCCAACGGCGGCGCGGCCGCCGACGCCACCGCCCCGTCCAACACCACCGTC 180
consensus_8348#1 ------------------------------------------------------------
consensus_8348#0 ACCCTCCCGCCGCTCACCCTCCGCGACGTGCCCCTGCTCCCGTCGGCGGCGGCGGCGACC 240
consensus_8348#1 ------------------------------------------------------------
consensus_8348#0 GACACGATCCCCAACCCGATCTCCCGCCACCCCTACTTCCACCCGCCGGCCACCTTCTAC 300
consensus_8348#1 ------------------------------------------------------------
consensus_8348#0 ATCTCCCCGGGTGACGTCTCCCTCCGCCACGCCTTCTTCGACCTCGCCTCCGCGTCGCCG 360
consensus_8348#1 ------------------------------------------------------------
consensus_8348#0 TCCCCGCTCGTCGCCTACCGCCGCGCGGGGCCGCGCGCGGGGGTCGCCGTGGACCCCGCC 420
consensus_8348#1 ------------------------------------------------------------
consensus_8348#0 CGCGCGCGCGCCGCGGTCGTCACCTGCGGGGGGCTCTGCCCGGGCCTCAACACCGTCCTC 480
consensus_8348#1 ------------------------------------------------------------
consensus_8348#0 AGGGAGCTCGTCGTCGGCCTCCGGGAGCTCTACGGCGTCCGCGACGTCTTCGGCGTCGCC 540
consensus_8348#1 ------------------------------------------------------------
consensus_8348#0 GCCGGCTACCGCGGGTTCTACGGCCCCGACGCCGACCACGCCCGCCTGGACCTGGCCGCC 600
consensus_8348#1 ------------------------------------------------------------
consensus_8348#0 GTCGACGACTGGCACAAGAAGGGCGGCACCGTGCTCAAGACCACCCGTGGTGGCTTTGAT 660
consensus_8348#1 ------------------------------------------------------------
consensus_8348#0 CTCAACAAGATCGTTGACGGCATCGTCGCGCGCGGGTATACGCAGGTTTATGCAATTGGA 720
consensus_8348#1 ------------------------------------------------------------
consensus_8348#0 GGGGATGGAACAATGAGAGGAGCTGTGGCCATCTTCAACGAGTTTAAGCGCCGTGGTTTG 780
consensus_8348#1 ------------------------------------------------------------
consensus_8348#0 AACATTTCTATTACAGGGATCCCGAAAACTGTGGACAATGATATCGGCATCATAGACAGG 840
consensus_8348#1 ------------------------------------------------------------
consensus_8348#0 TCATTTGGGTTCCAAACCGCAGTGGAGATTGCTCAGCAGGCAATCGACGCAGCACATGTC 900
consensus_8348#1 ------------------------------------------------------------
consensus_8348#0 GAGGCTGTGAGCGCCGTGAATGGCATTGGACTTGTCAAACTTATGGGCAGGAGCACAGGC 960
consensus_8348#1 ------------------------------------------------------------
consensus_8348#0 CACATTGCTCTTCATGCCACCCTGAGCAGCCGCGATGTTGACTGCTGTTTGATTCCTGAG 1020
consensus_8348#1 ------------------------------------------------------------
consensus_8348#0 GTTGATTTCTATCTTGAAGGAAAGGGGGGCCTGTTTGAGTTCTTGTATGAAAGGATAAAA 1080
consensus_8348#1 ------------------------------------------------------------
consensus_8348#0 CAGAAGGGACATGCTGTTGTCGTTGTTGCTGAAGGTGCTGGTCAGGAATTGATTCCAAGG 1140
consensus_8348#1 -----------------------TGTTGCTGAAGGTNCTGGTCAGGAATTGATNCCAAGG 37
************* **************** ******
consensus_8348#0 ACTGACGATCAAAAGCGGGAGCAGGACGAGTCCGGCAACATTGTGTTCCTTGATGTGGGT 1200
consensus_8348#1 ACTGACGATCAAAAGCGGGANCAGGACGAGTCCGGCAACATTGTGTNCCTTGATGTGGGT 97
******************** ************************* *************
consensus_8348#0 CCCTGGTTAAAATCTGAGCTGGGTAAATGGTGGAAGAGAGAACACCCAAGCGAGTTGTTC 1260
consensus_8348#1 CCCTGGTTAAAATCTGAGCTGGGTAAATGGTGGAAGAGAGAACCCCCAAGCGAGTTNTTC 157
******************************************* ************ ***
consensus_8348#0 ACTGTGAAGTATATCGATCCCACTTACATGATACGAGCTGTTCCAGCAAATGCCACTGAC 1320
consensus_8348#1 ACTGTGAAGTATATCGATCCCACTTACATGATACGAGCTGTTCCAGCAAATGCCACTGAC 217
************************************************************
consensus_8348#0 AATCTGTACTGTACATTGTTGGCACATTCGGCGATCCATGGGATCATGGCTGGGTACACT 1380
consensus_8348#1 AATCTGTACTGTACATTGTTGGCACATTCGGCGATCCATGGGATCATGGCTGGGTACACT 277
************************************************************
consensus_8348#0 GGCTTCGTCCCTGGCCCGATTAATGGAAACTATAGCTACATACCGCTGGAAGATGTTGCT 1440
consensus_8348#1 GGCTTCGTCCCTGGCCCGATTAATGGAAACTATAGCTACATACCGCTGGAAGATNTTGCT 337
****************************************************** *****
consensus_8348#0 GTGGCGAAGAACCCGGTGGATGTGAATGATCACAAATGGGCATGGGTTAGATCAGTCACA 1500
consensus_8348#1 NTGGCGAAGAACCCGGTGGATGTGAATGATCACAAATGGGCATGGGTTAGATCAGTCACA 397
***********************************************************
consensus_8348#0 AACCAACCAGATTTCATGAAGCCAAAATACTAAGACCAAAAGTGCTGTTACTGGACATGG 1560
consensus_8348#1 AACCAACCAGATTTCATGAAGCCAAAATACTAAGNCCAAAAGTGCTGTTACTGGACATGG 457
********************************** *************************
consensus_8348#0 TTGTATGACTTTTTCTCCCTGGAGCCTTGACACGTTAAGCTTGATTTCTTTCTATCCAGT 1620
consensus_8348#1 TTGTATGACTTTTTCTCCCTGGAGCCTTGACACGTTAAGCTTGATTTCTTTCTATCCAGT 517
************************************************************
consensus_8348#0 TTCTTCTCTTGTTATGCCGATCTATCTATAAGATGTTAGGTATTCTGATCTCCCTGGTTT 1680
consensus_8348#1 TTCTTCTCTTGTTATGCCGATCTATCTATAAGATGTTAGGTATTCTGATCTCCCTGGTTT 577
************************************************************
consensus_8348#0 GTGTTTGTGTGCACTTGAAATCGTGTTAGCAGGTATTGCTGTAAATCTGTAGTACATAAA 1740
consensus_8348#1 GTGTTTGTGTGCACTTGAAATCGTGTTAGCAGGTATTGCTGTAAATCTGTAGTACATAAA 637
************************************************************
consensus_8348#0 TAAATGAAGTGGCAGGAAATGTTGNTCTCCAAAAA------------------ 1775
consensus_8348#1 TAAATGAAGTGGCAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 690
******************* *****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||