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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8352#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1038 fasta sequence
[TTTTTTTTTTTTTTTTTTTGAAGGCAAAGCCTTCTTTATTTATTCCGGCCCAGTACACTACACACCATGACAAAACAAAAGTGGCCATCACTTTCTGCGCGCGACAGCAACATTATCCCACGCTTCATTTTGCCGCCATTGACCTCGCCGTCGCCATGAACATCTCCTTCATCGCCGTGAAGTGTTCGAGCAGCTTGGCCCTGTCCGGGAGGCACGCCTTGATCCTGTCGTCGGCGGCGTACTCCTTCGCCCAGCGGCAGAGGTCGGGGAACTCGTCGCCGGTGACCAGGCTCACCCCGGCGACCTCCTCTAGCACCTCCAGCCAGTAGGCGTACCCACTGGCGGCCAGGTCGAGGTAGCCGATGGCGTCGCCTCCGAAGAATCGCCTCCCCTTGAGCTGCGCCTCGAGGAGCTTCAGGTTCTCCTTGATCTCCGCCGCGAAGCCCTCCCGCACCTCGCCGTCGTCCGTCGACCACAGCGCCAGCCAGAACGGCTTCGTGCACTTGTCGTCGATGAATCGGGCCCAGAAGCGGGCGGCGGCGCGGAGGCCGGGGTCGGCGGGGAGGAGGAGGAGCGGGGCCGGGAACGCCTCGTCGACGTACTCGACGATGACAAGGGACTCGCAGACGGCGGCGCGGTGGTCGTCGTCGCCGTGGAGGAGGACGGGGACCTTCTTGTGGATGGGGTTGTGGGTGAGCAGCAGGTCGCTCTTGTTGCGGAGGTCCTCCAGGATGAGCTCGTATGGCACGCCCTTGAGCCGCAGGGCGGCCTCCGCGCGTTGGCTGTACGGGCTGTCGAAGGTGCCGATCACCTTCACCGGCGCCGGCGCCGGCGACGCCATGGTGGCTGCTCAGCTCGTACTGGATGGTTTGCTGCTGGTTGATTTAATTTGGAGGAGCTGATATTTAGTAGTGATTAGTGAAGCTTCCGTGCATGGGAAGGAAGGAAGGAAGCTTCCTCTAGTTTTTCGTTTTCGAGTAATTTGTTTACGTGATTGCCGATATTATATCTTTAAATTAATAGAAAAAAAGCCTTTAC]
[-] EMBL AU071140 [TTTTTTTTTTTTTTTTTTTGAAGGCAAAGCCTTCTTTATTTATTCCGGCCCAGTACACTACACACCATGACAAAACAAAAGTGGCCATCACTTTCTGCGCGCGACAGCAACATTATCCCACGCTTCATTTTGCCGCCATTGACCTCGCCGTCGCCATGAACATCTCCTTCATCGCCGTGAAGTGTTCGAGCAGCTTGGCCCTGTCCGGGAGGCACGCCTTGATCCTGTCGTCGGCGGNGTACTCCTTCGCCCAGCGGCAGAGGTCGGGGAACTCGTCGCCGGTGACCAGGCTCACCCCGGCGACCTCCTCTAGCACCTCCAGCCAGTAGGCGTACCCACTGGCGGCCAGGTCGAGGTAGCCGATGGCGTCGCCTCCGAAGAATCGCCTCCCCTTGAG TGCGCCTCGAGGAGCTTCAGGTTCTCCTTGATCTCCGCCGCGAAGCCCTCCCGCACCTCGCCGTCGTCCGTCGACCACAGCGCC ]
[-] EMBL CB680229 [ aaGCAAAGCTTTCTTTATTTATTTCGGCCCAGTACACTACACACCATGACAAAACAAAAGTGGCCATCACTTTCTGCGCGCGACAGCAACATTATCCCACGCTTCATTTTGCCGCCATTGACCTCGCCGTCGCCATGAACATCTCCTTCATCGCCGTGAAGTGTTCGAGCAGCTTGGCCCTGTCCGGGAGGCACGCCTTGATCCTGTCGTCGGCGGCGTACTCCTTCGCCCAGCGGCAGAGGTCGGGGAACTCGTCGCCGGTGACCAGGCTCACCCCGGCGACCTCCTCTAGCACCTCCAGCCAGTAGGCGTACCCACTGGCGGCCAGGTCGAGGTAGCCGATGGCGTCGCCTCCGAAGAATCGCCTCCCCTTGAGCTGCGCCTCGAGGAGCTTCAGGTTCTCCTTGATCTCCGCCGCGAAGCCCTCCCGCACCTCGCCGTCGTCCGTCGACCACAGCGCCAGCCAGAACGGCTTCGTGCACTTGTCGTCGATGAATCGGGCCCAGAAGCGGGCGGCGGCGCGGAGGCCGGGGTCGGCGGGGAGGAGGAGGAGCGGGGCCGGGAACGCCTCGTCGACGTACTCGACGATGACAAGGGACTCGCAGACGGCGGCGCGGTGGTCGTCGTCGCCGTGGAGGAGGACGGGGACCTTCTTGTGGATGGGGTTGTGGGTGAGCAGCAGGTCGCTCTTGTTGCGGAGGTCCTCCAGGATGAGCTCGTATGGCACGCCCTTGAGCCGCAGGGCGGCCTCCGCGCGTTGGCTGTACGGGCTGTCGAAGGTGCCGATCACCTTCACCGGCGCCGGCGCCGGGGACGC ]
[-] EMBL AK107822 [ CCTTCTTTATTTATTCCGGCCCAGTACACTACACACCATGACAAAACAAAAGTGGCCATCACTTTCTGCGCGCGACAGCAACATTATCCCACGCTTCATTTTGCCGCCATTGACCTCGCCGTCGCCATGAACATCTCCTTCATCGCCGTGAAGTGTTCGAGCAGCTTGGCCCTGTCCGGGAGGCACGCCTTGATCCTGTCGTCGGCGGCGTACTCCTTCGCCCAGCGGCAGAGGTCGGGGAACTCGTCGCCGGTGACCAGGCTCACCCCGGCGACCTCCTCTAGCACCTCCAGCCAGTAGGCGTACCCACTGGCGGCCAGGTCGAGGTAGCCGATGGCGTCGCCTCCGAAGAATCGCCTCCCCTTGAGCTGCGCCTCGAGGAGCTTCAGGTTCTCCTTGATCTCCGCCGCGAAGCCCTCCCGCACCTCGCCGTCGTCCGTCGACCACAGCGCCAGCCAGAACGGCTTCGTGCACTTGTCGTCGATGAATCGGGCCCAGAAGCGGGCGGCGGCGC GAGGCCGGGGTCGGCGGGGAGGAGGAGGAGCGGGGCCGGGAACGCCTCGTCGACGTACTCGACGATGACAAGGGACTCGCAGACGGCGGCGCGGTGGTCGTCGTCGCCGTGGAGGAGGACGGGGACCTTCTTGTGGATGGGGTTGTGGGTGAGCAGCAGGTCGCTCTTGTTGCGGAGGTCCTCCAGGATGAGCTCGTATGGCACGCCCTTGAGCCGCAGGGCGGCCTCCGCGCGTTGGCTGTACGGGCTGTCGAAGGTGCCGATCACCTTCACCGGCGCCGGCGCCGGCGACGCCATGGTGGCTGCTCAGCTCGTACTGGATGGTTT ]
[+] EMBL AK109284 [ CAAAAGTGGCCATCACTTTCTGCGCGCGACAGCAACATTATCCCACGCTTCATTTTGCCGCCATTGACCTCGCCGTCGCCATGAACATCTCCTTCATCGCCGTGAAGTGTTCGAGCAGCTTGGCCCTGTCCGGGAGGCACGCCTTGATCCTGTCGTCGGCGGCGTACTCCTTCGCCCAGCGGCAGAGGTCGGGGAACTCGTCGCCGGTGACCAGGCTCACCCCGGCGACCTCCTCTAGCACCTCCAGCCAGTAGGCGTACCCACTGGCGGCCAGGTCGAGGTAGCCGATGGCGTCGCCTCCGAAGAATCGCCTCCCCTTGAGCTGCGCCTCGAGGAGCTTCAAGTTCTCCTTGATCTCCGCCGCGAAGCCCTCCCGCACCTCGCCGTCGTCCGTCGACCACAGCGCCAGCCAGAACGGCTTCGTGCACTTGTCGTCGATGAATCGGGCCCAGAAGCGGACGGCGGCGCGGAGGCCGGGGTCGGCGGGGAGGAGGAGGAGCGGGGCCGGGAACGCCTCGTCGACGTACTCGACGATGACAAGGGACTCGCAGACGGCGGCGCGGTGGTCGTCGTCGCCGTGGAGGAGGACGGGGACCTTCTTGTGGATGGGGTTGTGGGTGAGCAGCAGGTCGCTCTTGTTGCGGAGGTCCTCCAGGATGAGCTCGTATGGCACGCCCTTGAGCCGCAGGGCGGCCTCCGCGCGTTGGCTGTACGGGCTGTCGAAGGTGCCGATCACCTTCACCGGCGCCGGCGCCGGCGACGCCATGGTGGCTGCTCAGCTCGTACTGGATGGTTTGCTGCTGGTTGATTTAATTTGGAGGAGCTGATATTTAGTAGTGATTAGTGAAGCTTCCGTGCATGGGAAGGAAGGAAGGAAGCTTCCTCTAGTTTTTCGTTTTCGAGTAATTTGTTTACGTGATTGCCGATATTATATCTTTAAATTAATAGAAAAAAAGCCTTTAC]
consensusID : consensus_8352#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 456 fasta sequence
[TATTCCCGTCCAAGACACTACACACCATGACAAAACAAAAGTGGCCATCACTTTCTGCACGCGACAACAACATTATCCCACTCTTCATTTTGCCGCCATTGACCTCCCCGGAGCAATGAACATCTCCTTCATCGCCGTGAAAGGTTCTAGCACCTTGGCCCTGACCGGGAGGCACGCCTTGATCCTGACGACGACGGCGTACTCCTTCGCCCAACGGCAGAGGTCGGGGAACTCGTCACCGGTGACCAGGCTCACCCCGGCGACCTCCTCTACCACCTCCAGCCAGAACGCGTACCCACTGGCGGCCAGGACGAGGTAGCCGATGGCGTCACCACCAAAAAATCCCCTCCCCTTGAGCTGCGCCTCAAGGAGCTTCAGGTTCTCCTTGATGTCCGCCGCGAAGCCATCCCGCACCTCGCCGTCGTCCGTCGACCACAGCGCAAGGCAAAACGGCTT]
[+] EMBL CB680230 [TATTCCCGTCCAAGACACTACACACCATGACAAAACAAAAGTGGCCATCACTTTCTGCACGCGACAACAACATTATCCCACTCTTCATTTTGCCGCCATTGACCTCCCCGGAGCAATGAACATCTCCTTCATCGCCGTGAAAGGTTCTAGCACCTTGGCCCTGACCGGGAGGCACGCCTTGATCCTGACGACGACGGCGTACTCCTTCGCCCAACGGCAGAGGTCGGGGAACTCGTCACCGGTGACCAGGCTCACCCCGGCGACCTCCTCTACCACCTCCAGCCAGAACGCGTACCCACTGGCGGCCAGGACGAGGTAGCCGATGGCGTCACCACCAAAAAATCCCCTCCCCTTGAGCTGCGCCTCAAGGAGCTTCAGGTTCTCCTTGATGTCCGCCGCGAAGCCATCCCGCACCTCGCCGTCGTCCGTCGACCACAGCGCAAGGCAAAACGGCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8352#0 TTTTTTTTTTTTTTTTTTTGAAGGCAAAGCCTTCTTTATTTATTCCGGCCCAGTACACTA 60
consensus_8352#1 ----------------------------------------TATTCCCGTCCAAGACACTA 20
****** * *** ******
consensus_8352#0 CACACCATGACAAAACAAAAGTGGCCATCACTTTCTGCGCGCGACAGCAACATTATCCCA 120
consensus_8352#1 CACACCATGACAAAACAAAAGTGGCCATCACTTTCTGCACGCGACAACAACATTATCCCA 80
************************************** ******* *************
consensus_8352#0 CGCTTCATTTTGCCGCCATTGACCTCGCCGTCGCCATGAACATCTCCTTCATCGCCGTGA 180
consensus_8352#1 CTCTTCATTTTGCCGCCATTGACCTCCCCGGAGCAATGAACATCTCCTTCATCGCCGTGA 140
* ************************ *** ** *************************
consensus_8352#0 AGTGTTCGAGCAGCTTGGCCCTGTCCGGGAGGCACGCCTTGATCCTGTCGTCGGCGGCGT 240
consensus_8352#1 AAGGTTCTAGCACCTTGGCCCTGACCGGGAGGCACGCCTTGATCCTGACGACGACGGCGT 200
* **** **** ********** *********************** ** ** ******
consensus_8352#0 ACTCCTTCGCCCAGCGGCAGAGGTCGGGGAACTCGTCGCCGGTGACCAGGCTCACCCCGG 300
consensus_8352#1 ACTCCTTCGCCCAACGGCAGAGGTCGGGGAACTCGTCACCGGTGACCAGGCTCACCCCGG 260
************* *********************** **********************
consensus_8352#0 CGACCTCCTCTAGCACCTCCAGCCAGTAGGCGTACCCACTGGCGGCCAGGTCGAGGTAGC 360
consensus_8352#1 CGACCTCCTCTACCACCTCCAGCCAGAACGCGTACCCACTGGCGGCCAGGACGAGGTAGC 320
************ ************* * ********************* *********
consensus_8352#0 CGATGGCGTCGCCTCCGAAGAATCGCCTCCCCTTGAGCTGCGCCTCGAGGAGCTTCAGGT 420
consensus_8352#1 CGATGGCGTCACCACCAAAAAATCCCCTCCCCTTGAGCTGCGCCTCAAGGAGCTTCAGGT 380
********** ** ** ** **** ********************* *************
consensus_8352#0 TCTCCTTGATCTCCGCCGCGAAGCCCTCCCGCACCTCGCCGTCGTCCGTCGACCACAGCG 480
consensus_8352#1 TCTCCTTGATGTCCGCCGCGAAGCCATCCCGCACCTCGCCGTCGTCCGTCGACCACAGCG 440
********** ************** **********************************
consensus_8352#0 CCAGCCAGAACGGCTTCGTGCACTTGTCGTCGATGAATCGGGCCCAGAAGCGGGCGGCGG 540
consensus_8352#1 CAAGGCAAAACGGCTT-------------------------------------------- 456
* ** ** ********
consensus_8352#0 CGCGGAGGCCGGGGTCGGCGGGGAGGAGGAGGAGCGGGGCCGGGAACGCCTCGTCGACGT 600
consensus_8352#1 ------------------------------------------------------------
consensus_8352#0 ACTCGACGATGACAAGGGACTCGCAGACGGCGGCGCGGTGGTCGTCGTCGCCGTGGAGGA 660
consensus_8352#1 ------------------------------------------------------------
consensus_8352#0 GGACGGGGACCTTCTTGTGGATGGGGTTGTGGGTGAGCAGCAGGTCGCTCTTGTTGCGGA 720
consensus_8352#1 ------------------------------------------------------------
consensus_8352#0 GGTCCTCCAGGATGAGCTCGTATGGCACGCCCTTGAGCCGCAGGGCGGCCTCCGCGCGTT 780
consensus_8352#1 ------------------------------------------------------------
consensus_8352#0 GGCTGTACGGGCTGTCGAAGGTGCCGATCACCTTCACCGGCGCCGGCGCCGGCGACGCCA 840
consensus_8352#1 ------------------------------------------------------------
consensus_8352#0 TGGTGGCTGCTCAGCTCGTACTGGATGGTTTGCTGCTGGTTGATTTAATTTGGAGGAGCT 900
consensus_8352#1 ------------------------------------------------------------
consensus_8352#0 GATATTTAGTAGTGATTAGTGAAGCTTCCGTGCATGGGAAGGAAGGAAGGAAGCTTCCTC 960
consensus_8352#1 ------------------------------------------------------------
consensus_8352#0 TAGTTTTTCGTTTTCGAGTAATTTGTTTACGTGATTGCCGATATTATATCTTTAAATTAA 1020
consensus_8352#1 ------------------------------------------------------------
consensus_8352#0 TAGAAAAAAAGCCTTTAC 1038
consensus_8352#1 ------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||