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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8359#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 683 fasta sequence
[TTTTTTTTTTGAATGCCAATGATGCAAGGATCCAGCTACAGCTGACCTTTGGTCTTGACTAACCAGGTTGTTGCTAATACATGAAACAAATTCTAATGGAAGTTACACAGGCATAGATAAACCACCAGGCTATAAACCATCTGCCTGCAGTGCGTCTGTTCAAACATCAAAGTGAAAGTACAACCTG-GCAGCAAAACGTTTTGAAGCTAATTCAAGAAAGAAAAAAGATAGTTCAAGTTTAACCTAAACATGACTAATCGTCCTGCTCAACCTTCAGGCTCTGAAGCTTCGAGTCCAGCTCACCGTCATCCTCTTCCTCCTCTTCCTCTTCCTCATCATCTTCAGCCTCCCCCTCAGGGTCGTTCTCATCTAGTGGACCAAGCACCTCCACAGAGTTCTCACCACTCTTCAGAATATCTTTCACCTCATCAATCCCTTCGTCCGAGATGAAATTCCCGTTTATGTTCAGTTGCACAAAACCTGGCTTGTTTGCGATTGCCTGGGCAAAGCACCGAGCTCCCACCCTCTGCAGCATATTTGGGCTAACATCAAGCTCCTTCAGATCCTGGCGCCCATCTTCCAGTGATTTTGCAATCACCACCACACCATCACTCTTCAAGTCATTCTCTGGCAAGGTCAACTTCTTAAGGGATTGCATTGCTGTCAAGGATTCTGCTTAAGGT]
[+] EMBL CA759340 [TTTTTTTTTTGAATGCCAATGATGCAAGGATCCAGCTACAGCTGACCTTTGGTCTTGACTAACCAGGTTGTTGCTAATACATGAAACAAATTCTAATGGAAGTTACACAGGCATAGATAAACCACCAGACTATAAACCATCTGCCTGCAGTGCGTCTGTTCAAACATCAAAGTGAAAGTACAACCTG GCAGCAAAACGTTTTGAAGCTAATTCAAGAAAGAAAAAAGATAGTTCAAGTTTAACCTAAACATGACTAATCGTCCTGCTCAACCTTCAGGCTCTGAAGCTTCGAGTCCAGCTCACCGTCATCCTCTTCCTCCTCTTCCTCTTCCTCATCATCTTCAGCCTCCCCCTCAGGGTCGTTCTCATCTAGTGGACCAAGCACCTCCACAGAGTTCTCACCACTCTTCAGAATATCTTTCACCTCATCAATCCCTTCGTCCGAGATGAAATTCCCGTTTATGTTCAGTTGCACAAAACCTGGCTTGTTTGCGATTGCCTGGGCAAAGCACCGAGCTCCCACCCTCTGCAGCATATTTGGGCTAACATCAAGCTCCTTCAGATCCTGGCGCCCATCTTCCAGTGATTTTGCAATCACCACCACACCATCACTCTTCAAGTCATTCTCTGGCAAGGTCAACTTCTTAAGGGATTGCATTGCTGTCAAGGATTCTGCTTAAGGT]
[+] EMBL CF280517 [ GATCCAGCTACAGCTGACCTTTGGTCTTGACTAACCAGGTTGTTGCTAATACATGAAACAAATTCTAATGGAAGTTACACAGGCATAGATAAACCACCAGGCTATAAACCATTTTCTTGTAGTGCGTCTGTTCAAACATCAAAGTGAAAGTACAACCTGTTTTTTTTTACGTTTTGAAGCTAATTCAAGAAAGAAAAAAGATAGTTCAAGTTTAACCTAAACATGACTAATCGTCCTGCTCAACCTTCAGGCTCTGAAGCTTCGAGTCCAGCTCACCGTCATCCTCTTCCTCCTCTTCCTCTTCCTCATCATCTTCAGCCTCCCCCTCAGGGTCGTTCTCATCTAGTGGACCAAGCACCTCCACAGAGTTC ]
[+] EMBL CA998243 [ TCCAGCTACAGCTGACCTTTGGTCTTGACTAACCAGGTTGTTGCTAATACATGAAACAAATTCTAATGGAAGTTACACAGGCATAGATAAACCACCAGGCTATAAACCATCTGCCTGCAGTGCGTCTGTTCAAACATCAAAGTGAAAGTACAACCTG GCAGCAAAACGTTTTGAAGCTAATTCAAGAAAGAAAAAAGATAGTTCAAGTTTAACCTAAACATGACTAATCGTCCTGCTCAACCTTCAGGCTCTGAAGCTTCGAGTCCAGCTCACCGTCATCCTCTTCCTCCTCTTCCTCTTCCTCATCATCTTCAGCCTCCCCCTCAAGGTCGTTCTCATCTAGTGGACCAAGCACCTCCACAGAGTTCTCACCACTCTTCAGAATATCTTTCACCTCATCAATCCCTTCGTCCGAGA ]
consensusID : consensus_8359#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence
[TTGATGCCAGGATCAGCTACAGCTGACCTTTGGTCTTGACTAACCAGGTTGTTGCTAATACATGAAACAAATTCTAATGGCAAGTTACACAGGCATAGATAAACCACCAGGCTATAAACCATCTGCCTGCAGTGCGTCTGTTCAAACATCAAAGTGAAAGTACAACCTGGCAGGGNAAACGTTTTGAAGCTAATTCAAGAACAGACAACACACAGCATAGTTCAAGTTTAACCTAAACATGCACTCAATCGTCCTGCTCAACCTTCAGGGCTCTGAAGCTTCGCAGGTCCAGCTCACCGTCATCCTCTTCCTCCTCTTCCTCTTCCTCATCATCTTCAGCCATCCCCCATCAGGGTCGTATCTCAATCTAGGTGGACCAAGCAGCCTCCACAGAGATTCATCACCACTCTTCAGAATATCTTTCACCGTCATCAATCCCATTCGGTCCGAGATGAAATTCCCGTTTATGTTCAGTTGCACAAAACCTGGCTTGTATATGCGATTGGCCTGGGGCAAAGCACCGAGCTCCCCAACCCTCTGGCAGGAATAATTCGAGCTAAACATCAAAGCTCCTTCAGATCCCTGGTGTCCATCTTCCAGTGGATTTTTGAATNCAACCACAGGAACCATCATCCNTACAGATNACNTTCTCTGGCAGGCAATTCTTCAGTG]
[-] EMBL BI806685 [TTGATGCCAGGATCAGCTACAGCTGACCTTTGGTCTTGACTAACCAGGTTGTTGCTAATACATGAAACAAATTCTAATGGCAAGTTACACAGGCATAGATAAACCACCAGGCTATAAACCATCTGCCTGCAGTGCGTCTGTTCAAACATCAAAGTGAAAGTACAACCTGGCAGGGNAAACGTTTTGAAGCTAATTCAAGAACAGACAACACACAGCATAGTTCAAGTTTAACCTAAACATGCACTCAATCGTCCTGCTCAACCTTCAGGGCTCTGAAGCTTCGCAGGTCCAGCTCACCGTCATCCTCTTCCTCCTCTTCCTCTTCCTCATCATCTTCAGCCATCCCCCATCAGGGTCGTATCTCAATCTAGGTGGACCAAGCAGCCTCCACAGAGATTCATCACCACTCTTCAGAATATCTTTCACCGTCATCAATCCCATTCGGTCCGAGATGAAATTCCCGTTTATGTTCAGTTGCACAAAACCTGGCTTGTATATGCGATTGGCCTGGGGCAAAGCACCGAGCTCCCCAACCCTCTGGCAGGAATAATTCGAGCTAAACATCAAAGCTCCTTCAGATCCCTGGTGTCCATCTTCCAGTGGATTTTTGAATNCAACCACAGGAACCATCATCCNTACAGATNACNTTCTCTGGCAGGCAATTCTTCAGTG]
consensusID : consensus_8359#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence
[TTTTTTTCACAGCAAATGAATGCCAATGATGCAAGGATCCAGCTACAGCTGACCTTGGGTCTTGACTAACCAGGTGTTGCTAATACATGAAACAAATTCTAATGGAAGTTACACAGGCATAGATAAACCACCAGGCTATAAACCATCTGCCTGCAGGTGCGTCTGTTCAAACATCAAAGTGAAAGTACAACCTGGCAGCAAAACGTTTGGAAGCTAATTCAAGAAAGAAAAAAAGATAGTTCAAGTTTAACCTAAACATGACTAATCGTCCTGCTCAACCTTCAGGCTCTGAAGCTTCGAGTCCAGCTCACCGTCATCCTCTTCCTCCTCTTCCTCTTCCTCATCATCTTCAGCCTCCCCCTCAGGGTCGTTCTCATCTAGTGGACCAAGCACCTCCACAGAGTTCTCACCACTCTTCAGAATATCTTTCACCTCATCAATCCCTTCGTCCGAGATGAAATTCCCGTTTATGTTCAGGTTGGAACAAAAAACCCT]
[-] EMBL BI810904 [TTTTTTTCACAGCAAATGAATGCCAATGATGCAAGGATCCAGCTACAGCTGACCTTGGGTCTTGACTAACCAGGTGTTGCTAATACATGAAACAAATTCTAATGGAAGTTACACAGGCATAGATAAACCACCAGGCTATAAACCATCTGCCTGCAGGTGCGTCTGTTCAAACATCAAAGTGAAAGTACAACCTGGCAGCAAAACGTTTGGAAGCTAATTCAAGAAAGAAAAAAAGATAGTTCAAGTTTAACCTAAACATGACTAATCGTCCTGCTCAACCTTCAGGCTCTGAAGCTTCGAGTCCAGCTCACCGTCATCCTCTTCCTCCTCTTCCTCTTCCTCATCATCTTCAGCCTCCCCCTCAGGGTCGTTCTCATCTAGTGGACCAAGCACCTCCACAGAGTTCTCACCACTCTTCAGAATATCTTTCACCTCATCAATCCCTTCGTCCGAGATGAAATTCCCGTTTATGTTCAGGTTGGAACAAAAAACCCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8359#0 TTTTTTTTT-------TGAATGCCAATGATGCAAGGATCCAGCTACAGCTGACCTTTGGT 53
consensus_8359#2 TTTTTTTCACAGCAAATGAATGCCAATGATGCAAGGATCCAGCTACAGCTGACCTTGGGT 60
consensus_8359#1 -------------------------TTGATGCCAGGATC-AGCTACAGCTGACCTTTGGT 34
****** ****** **************** ***
consensus_8359#0 CTTGACTAACCAGGTTGTTGCTAATACATGAAACAAATTCTAATGG-AAGTTACACAGGC 112
consensus_8359#2 CTTGACTAACCAGGT-GTTGCTAATACATGAAACAAATTCTAATGG-AAGTTACACAGGC 118
consensus_8359#1 CTTGACTAACCAGGTTGTTGCTAATACATGAAACAAATTCTAATGGCAAGTTACACAGGC 94
*************** ****************************** *************
consensus_8359#0 ATAGATAAACCACCAGGCTATAAACCATCTGCCTGCAG-TGCGTCTGTTCAAACATCAAA 171
consensus_8359#2 ATAGATAAACCACCAGGCTATAAACCATCTGCCTGCAGGTGCGTCTGTTCAAACATCAAA 178
consensus_8359#1 ATAGATAAACCACCAGGCTATAAACCATCTGCCTGCAG-TGCGTCTGTTCAAACATCAAA 153
************************************** *********************
consensus_8359#0 GTGAAAGTACAACCTGGCAGC-AAAACGTTTTGAAGCTAATTCAAGAAAGAAAAA----- 225
consensus_8359#2 GTGAAAGTACAACCTGGCAGC-AAAACGTTTGGAAGCTAATTCAAGAAAGAAAAA----- 232
consensus_8359#1 GTGAAAGTACAACCTGGCAGGGNAAACGTTTTGAAGCTAATTCAAGAACAGACAACACAC 213
******************** ******** **************** * **
consensus_8359#0 A-GATAGTTCAAGTTTAACCTAAACATG-ACT-AATCGTCCTGCTCAACCTTCAGG-CTC 281
consensus_8359#2 AAGATAGTTCAAGTTTAACCTAAACATG-ACT-AATCGTCCTGCTCAACCTTCAGG-CTC 289
consensus_8359#1 AGCATAGTTCAAGTTTAACCTAAACATGCACTCAATCGTCCTGCTCAACCTTCAGGGCTC 273
* ************************* *** *********************** ***
consensus_8359#0 TGAAGCTTCG--AGTCCAGCTCACCGTCATCCTCTTCCTCCTCTTCCTCTTCCTCATCAT 339
consensus_8359#2 TGAAGCTTCG--AGTCCAGCTCACCGTCATCCTCTTCCTCCTCTTCCTCTTCCTCATCAT 347
consensus_8359#1 TGAAGCTTCGCAGGTCCAGCTCACCGTCATCCTCTTCCTCCTCTTCCTCTTCCTCATCAT 333
********** ***********************************************
consensus_8359#0 CTTCAGCCTCCCCC--TCAGGGTCGT-TCTCA-TCTAG-TGGACCAAGCA-CCTCCACAG 393
consensus_8359#2 CTTCAGCCTCCCCC--TCAGGGTCGT-TCTCA-TCTAG-TGGACCAAGCA-CCTCCACAG 401
consensus_8359#1 CTTCAGCCATCCCCCATCAGGGTCGTATCTCAATCTAGGTGGACCAAGCAGCCTCCACAG 393
******** **** ********** ***** ***** *********** *********
consensus_8359#0 AGTTC--TCACCACTCTTCAGAATATCTTTCACC-TCATCAATCCCTTC--GTCCGAGAT 448
consensus_8359#2 AGTTC--TCACCACTCTTCAGAATATCTTTCACC-TCATCAATCCCTTC--GTCCGAGAT 456
consensus_8359#1 AGATTCATCACCACTCTTCAGAATATCTTTCACCGTCATCAATCCCATTCGGTCCGAGAT 453
** * *************************** *********** * *********
consensus_8359#0 GAAATTCCCGTTTATGTTCAGTTGCACAAAACCTGGCTTGTTT--GCGATTGCCT--GGG 504
consensus_8359#2 GAAATTCCCGTTTATGTTCAGGTTGGAACAAAAAACCCT--------------------- 495
consensus_8359#1 GAAATTCCCGTTTATGTTCAGTTGCACAAAACCTGGCTTGTATATGCGATTGGCCTGGGG 513
********************* * * ** * *
consensus_8359#0 CAAAGCACCGAGCTCCCACCCTCTGCAGCAT-----ATTTGGGCTAA-CATCAA-GCTCC 557
consensus_8359#2 ------------------------------------------------------------
consensus_8359#1 CAAAGCACCGAGCTCCCCAACCCTCTGGCAGGAATAATTCGAGCTAAACATCAAAGCTCC 573
consensus_8359#0 TTCAGATCC-TGGCGCCCATCTTCCAGTGATTTTGCAATCACCACCACA----CCATCAC 612
consensus_8359#2 ------------------------------------------------------------
consensus_8359#1 TTCAGATCCCTGGTGTCCATCTTCCAGTGGATTTTTGAATNCAACCACAGGAACCATCAT 633
consensus_8359#0 TCTT-CAAGTCATTCTCTGGCAAGGTCAACTTCTTAAGGGATTGCATTGCTGTCAAGGAT 671
consensus_8359#2 ------------------------------------------------------------
consensus_8359#1 CCNTACAGATNACNTTCTCTGGCAGGCAATTCTTCAGTG--------------------- 672
consensus_8359#0 TCTGCTTAAGGT 683
consensus_8359#2 ------------
consensus_8359#1 ------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||