These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8359#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 683 fasta sequence [TTTTTTTTTTGAATGCCAATGATGCAAGGATCCAGCTACAGCTGACCTTTGGTCTTGACTAACCAGGTTGTTGCTAATACATGAAACAAATTCTAATGGAAGTTACACAGGCATAGATAAACCACCAGGCTATAAACCATCTGCCTGCAGTGCGTCTGTTCAAACATCAAAGTGAAAGTACAACCTG-GCAGCAAAACGTTTTGAAGCTAATTCAAGAAAGAAAAAAGATAGTTCAAGTTTAACCTAAACATGACTAATCGTCCTGCTCAACCTTCAGGCTCTGAAGCTTCGAGTCCAGCTCACCGTCATCCTCTTCCTCCTCTTCCTCTTCCTCATCATCTTCAGCCTCCCCCTCAGGGTCGTTCTCATCTAGTGGACCAAGCACCTCCACAGAGTTCTCACCACTCTTCAGAATATCTTTCACCTCATCAATCCCTTCGTCCGAGATGAAATTCCCGTTTATGTTCAGTTGCACAAAACCTGGCTTGTTTGCGATTGCCTGGGCAAAGCACCGAGCTCCCACCCTCTGCAGCATATTTGGGCTAACATCAAGCTCCTTCAGATCCTGGCGCCCATCTTCCAGTGATTTTGCAATCACCACCACACCATCACTCTTCAAGTCATTCTCTGGCAAGGTCAACTTCTTAAGGGATTGCATTGCTGTCAAGGATTCTGCTTAAGGT] [+] EMBL CA759340 [TTTTTTTTTTGAATGCCAATGATGCAAGGATCCAGCTACAGCTGACCTTTGGTCTTGACTAACCAGGTTGTTGCTAATACATGAAACAAATTCTAATGGAAGTTACACAGGCATAGATAAACCACCAGACTATAAACCATCTGCCTGCAGTGCGTCTGTTCAAACATCAAAGTGAAAGTACAACCTG GCAGCAAAACGTTTTGAAGCTAATTCAAGAAAGAAAAAAGATAGTTCAAGTTTAACCTAAACATGACTAATCGTCCTGCTCAACCTTCAGGCTCTGAAGCTTCGAGTCCAGCTCACCGTCATCCTCTTCCTCCTCTTCCTCTTCCTCATCATCTTCAGCCTCCCCCTCAGGGTCGTTCTCATCTAGTGGACCAAGCACCTCCACAGAGTTCTCACCACTCTTCAGAATATCTTTCACCTCATCAATCCCTTCGTCCGAGATGAAATTCCCGTTTATGTTCAGTTGCACAAAACCTGGCTTGTTTGCGATTGCCTGGGCAAAGCACCGAGCTCCCACCCTCTGCAGCATATTTGGGCTAACATCAAGCTCCTTCAGATCCTGGCGCCCATCTTCCAGTGATTTTGCAATCACCACCACACCATCACTCTTCAAGTCATTCTCTGGCAAGGTCAACTTCTTAAGGGATTGCATTGCTGTCAAGGATTCTGCTTAAGGT] [+] EMBL CF280517 [ GATCCAGCTACAGCTGACCTTTGGTCTTGACTAACCAGGTTGTTGCTAATACATGAAACAAATTCTAATGGAAGTTACACAGGCATAGATAAACCACCAGGCTATAAACCATTTTCTTGTAGTGCGTCTGTTCAAACATCAAAGTGAAAGTACAACCTGTTTTTTTTTACGTTTTGAAGCTAATTCAAGAAAGAAAAAAGATAGTTCAAGTTTAACCTAAACATGACTAATCGTCCTGCTCAACCTTCAGGCTCTGAAGCTTCGAGTCCAGCTCACCGTCATCCTCTTCCTCCTCTTCCTCTTCCTCATCATCTTCAGCCTCCCCCTCAGGGTCGTTCTCATCTAGTGGACCAAGCACCTCCACAGAGTTC ] [+] EMBL CA998243 [ TCCAGCTACAGCTGACCTTTGGTCTTGACTAACCAGGTTGTTGCTAATACATGAAACAAATTCTAATGGAAGTTACACAGGCATAGATAAACCACCAGGCTATAAACCATCTGCCTGCAGTGCGTCTGTTCAAACATCAAAGTGAAAGTACAACCTG GCAGCAAAACGTTTTGAAGCTAATTCAAGAAAGAAAAAAGATAGTTCAAGTTTAACCTAAACATGACTAATCGTCCTGCTCAACCTTCAGGCTCTGAAGCTTCGAGTCCAGCTCACCGTCATCCTCTTCCTCCTCTTCCTCTTCCTCATCATCTTCAGCCTCCCCCTCAAGGTCGTTCTCATCTAGTGGACCAAGCACCTCCACAGAGTTCTCACCACTCTTCAGAATATCTTTCACCTCATCAATCCCTTCGTCCGAGA ] consensusID : consensus_8359#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence [TTGATGCCAGGATCAGCTACAGCTGACCTTTGGTCTTGACTAACCAGGTTGTTGCTAATACATGAAACAAATTCTAATGGCAAGTTACACAGGCATAGATAAACCACCAGGCTATAAACCATCTGCCTGCAGTGCGTCTGTTCAAACATCAAAGTGAAAGTACAACCTGGCAGGGNAAACGTTTTGAAGCTAATTCAAGAACAGACAACACACAGCATAGTTCAAGTTTAACCTAAACATGCACTCAATCGTCCTGCTCAACCTTCAGGGCTCTGAAGCTTCGCAGGTCCAGCTCACCGTCATCCTCTTCCTCCTCTTCCTCTTCCTCATCATCTTCAGCCATCCCCCATCAGGGTCGTATCTCAATCTAGGTGGACCAAGCAGCCTCCACAGAGATTCATCACCACTCTTCAGAATATCTTTCACCGTCATCAATCCCATTCGGTCCGAGATGAAATTCCCGTTTATGTTCAGTTGCACAAAACCTGGCTTGTATATGCGATTGGCCTGGGGCAAAGCACCGAGCTCCCCAACCCTCTGGCAGGAATAATTCGAGCTAAACATCAAAGCTCCTTCAGATCCCTGGTGTCCATCTTCCAGTGGATTTTTGAATNCAACCACAGGAACCATCATCCNTACAGATNACNTTCTCTGGCAGGCAATTCTTCAGTG] [-] EMBL BI806685 [TTGATGCCAGGATCAGCTACAGCTGACCTTTGGTCTTGACTAACCAGGTTGTTGCTAATACATGAAACAAATTCTAATGGCAAGTTACACAGGCATAGATAAACCACCAGGCTATAAACCATCTGCCTGCAGTGCGTCTGTTCAAACATCAAAGTGAAAGTACAACCTGGCAGGGNAAACGTTTTGAAGCTAATTCAAGAACAGACAACACACAGCATAGTTCAAGTTTAACCTAAACATGCACTCAATCGTCCTGCTCAACCTTCAGGGCTCTGAAGCTTCGCAGGTCCAGCTCACCGTCATCCTCTTCCTCCTCTTCCTCTTCCTCATCATCTTCAGCCATCCCCCATCAGGGTCGTATCTCAATCTAGGTGGACCAAGCAGCCTCCACAGAGATTCATCACCACTCTTCAGAATATCTTTCACCGTCATCAATCCCATTCGGTCCGAGATGAAATTCCCGTTTATGTTCAGTTGCACAAAACCTGGCTTGTATATGCGATTGGCCTGGGGCAAAGCACCGAGCTCCCCAACCCTCTGGCAGGAATAATTCGAGCTAAACATCAAAGCTCCTTCAGATCCCTGGTGTCCATCTTCCAGTGGATTTTTGAATNCAACCACAGGAACCATCATCCNTACAGATNACNTTCTCTGGCAGGCAATTCTTCAGTG] consensusID : consensus_8359#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence [TTTTTTTCACAGCAAATGAATGCCAATGATGCAAGGATCCAGCTACAGCTGACCTTGGGTCTTGACTAACCAGGTGTTGCTAATACATGAAACAAATTCTAATGGAAGTTACACAGGCATAGATAAACCACCAGGCTATAAACCATCTGCCTGCAGGTGCGTCTGTTCAAACATCAAAGTGAAAGTACAACCTGGCAGCAAAACGTTTGGAAGCTAATTCAAGAAAGAAAAAAAGATAGTTCAAGTTTAACCTAAACATGACTAATCGTCCTGCTCAACCTTCAGGCTCTGAAGCTTCGAGTCCAGCTCACCGTCATCCTCTTCCTCCTCTTCCTCTTCCTCATCATCTTCAGCCTCCCCCTCAGGGTCGTTCTCATCTAGTGGACCAAGCACCTCCACAGAGTTCTCACCACTCTTCAGAATATCTTTCACCTCATCAATCCCTTCGTCCGAGATGAAATTCCCGTTTATGTTCAGGTTGGAACAAAAAACCCT] [-] EMBL BI810904 [TTTTTTTCACAGCAAATGAATGCCAATGATGCAAGGATCCAGCTACAGCTGACCTTGGGTCTTGACTAACCAGGTGTTGCTAATACATGAAACAAATTCTAATGGAAGTTACACAGGCATAGATAAACCACCAGGCTATAAACCATCTGCCTGCAGGTGCGTCTGTTCAAACATCAAAGTGAAAGTACAACCTGGCAGCAAAACGTTTGGAAGCTAATTCAAGAAAGAAAAAAAGATAGTTCAAGTTTAACCTAAACATGACTAATCGTCCTGCTCAACCTTCAGGCTCTGAAGCTTCGAGTCCAGCTCACCGTCATCCTCTTCCTCCTCTTCCTCTTCCTCATCATCTTCAGCCTCCCCCTCAGGGTCGTTCTCATCTAGTGGACCAAGCACCTCCACAGAGTTCTCACCACTCTTCAGAATATCTTTCACCTCATCAATCCCTTCGTCCGAGATGAAATTCCCGTTTATGTTCAGGTTGGAACAAAAAACCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8359#0 TTTTTTTTT-------TGAATGCCAATGATGCAAGGATCCAGCTACAGCTGACCTTTGGT 53 consensus_8359#2 TTTTTTTCACAGCAAATGAATGCCAATGATGCAAGGATCCAGCTACAGCTGACCTTGGGT 60 consensus_8359#1 -------------------------TTGATGCCAGGATC-AGCTACAGCTGACCTTTGGT 34 ****** ****** **************** *** consensus_8359#0 CTTGACTAACCAGGTTGTTGCTAATACATGAAACAAATTCTAATGG-AAGTTACACAGGC 112 consensus_8359#2 CTTGACTAACCAGGT-GTTGCTAATACATGAAACAAATTCTAATGG-AAGTTACACAGGC 118 consensus_8359#1 CTTGACTAACCAGGTTGTTGCTAATACATGAAACAAATTCTAATGGCAAGTTACACAGGC 94 *************** ****************************** ************* consensus_8359#0 ATAGATAAACCACCAGGCTATAAACCATCTGCCTGCAG-TGCGTCTGTTCAAACATCAAA 171 consensus_8359#2 ATAGATAAACCACCAGGCTATAAACCATCTGCCTGCAGGTGCGTCTGTTCAAACATCAAA 178 consensus_8359#1 ATAGATAAACCACCAGGCTATAAACCATCTGCCTGCAG-TGCGTCTGTTCAAACATCAAA 153 ************************************** ********************* consensus_8359#0 GTGAAAGTACAACCTGGCAGC-AAAACGTTTTGAAGCTAATTCAAGAAAGAAAAA----- 225 consensus_8359#2 GTGAAAGTACAACCTGGCAGC-AAAACGTTTGGAAGCTAATTCAAGAAAGAAAAA----- 232 consensus_8359#1 GTGAAAGTACAACCTGGCAGGGNAAACGTTTTGAAGCTAATTCAAGAACAGACAACACAC 213 ******************** ******** **************** * ** consensus_8359#0 A-GATAGTTCAAGTTTAACCTAAACATG-ACT-AATCGTCCTGCTCAACCTTCAGG-CTC 281 consensus_8359#2 AAGATAGTTCAAGTTTAACCTAAACATG-ACT-AATCGTCCTGCTCAACCTTCAGG-CTC 289 consensus_8359#1 AGCATAGTTCAAGTTTAACCTAAACATGCACTCAATCGTCCTGCTCAACCTTCAGGGCTC 273 * ************************* *** *********************** *** consensus_8359#0 TGAAGCTTCG--AGTCCAGCTCACCGTCATCCTCTTCCTCCTCTTCCTCTTCCTCATCAT 339 consensus_8359#2 TGAAGCTTCG--AGTCCAGCTCACCGTCATCCTCTTCCTCCTCTTCCTCTTCCTCATCAT 347 consensus_8359#1 TGAAGCTTCGCAGGTCCAGCTCACCGTCATCCTCTTCCTCCTCTTCCTCTTCCTCATCAT 333 ********** *********************************************** consensus_8359#0 CTTCAGCCTCCCCC--TCAGGGTCGT-TCTCA-TCTAG-TGGACCAAGCA-CCTCCACAG 393 consensus_8359#2 CTTCAGCCTCCCCC--TCAGGGTCGT-TCTCA-TCTAG-TGGACCAAGCA-CCTCCACAG 401 consensus_8359#1 CTTCAGCCATCCCCCATCAGGGTCGTATCTCAATCTAGGTGGACCAAGCAGCCTCCACAG 393 ******** **** ********** ***** ***** *********** ********* consensus_8359#0 AGTTC--TCACCACTCTTCAGAATATCTTTCACC-TCATCAATCCCTTC--GTCCGAGAT 448 consensus_8359#2 AGTTC--TCACCACTCTTCAGAATATCTTTCACC-TCATCAATCCCTTC--GTCCGAGAT 456 consensus_8359#1 AGATTCATCACCACTCTTCAGAATATCTTTCACCGTCATCAATCCCATTCGGTCCGAGAT 453 ** * *************************** *********** * ********* consensus_8359#0 GAAATTCCCGTTTATGTTCAGTTGCACAAAACCTGGCTTGTTT--GCGATTGCCT--GGG 504 consensus_8359#2 GAAATTCCCGTTTATGTTCAGGTTGGAACAAAAAACCCT--------------------- 495 consensus_8359#1 GAAATTCCCGTTTATGTTCAGTTGCACAAAACCTGGCTTGTATATGCGATTGGCCTGGGG 513 ********************* * * ** * * consensus_8359#0 CAAAGCACCGAGCTCCCACCCTCTGCAGCAT-----ATTTGGGCTAA-CATCAA-GCTCC 557 consensus_8359#2 ------------------------------------------------------------ consensus_8359#1 CAAAGCACCGAGCTCCCCAACCCTCTGGCAGGAATAATTCGAGCTAAACATCAAAGCTCC 573 consensus_8359#0 TTCAGATCC-TGGCGCCCATCTTCCAGTGATTTTGCAATCACCACCACA----CCATCAC 612 consensus_8359#2 ------------------------------------------------------------ consensus_8359#1 TTCAGATCCCTGGTGTCCATCTTCCAGTGGATTTTTGAATNCAACCACAGGAACCATCAT 633 consensus_8359#0 TCTT-CAAGTCATTCTCTGGCAAGGTCAACTTCTTAAGGGATTGCATTGCTGTCAAGGAT 671 consensus_8359#2 ------------------------------------------------------------ consensus_8359#1 CCNTACAGATNACNTTCTCTGGCAGGCAATTCTTCAGTG--------------------- 672 consensus_8359#0 TCTGCTTAAGGT 683 consensus_8359#2 ------------ consensus_8359#1 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||