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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8364#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1236 fasta sequence
[CGCCGCCGCTGCTACAGCCGTCGTCTCCCACCGCACGCCCCGCCCCGCCCCCCACCCATCGCCGGCGACGCGGATCCCTCCTCGACGGTGCGCCCGCCTGAGCAGCCGTGCTATACCTCTGTCGGGGGCATATTCCCCGCCGGCGCAGCAAGCTGAGCGGAGAGGAGGATGCCGAAGCGGACGACGCACACGTACTCCAGCGAGGACGCCCTGCCGGAGGGGCCCGAGTCCGACCTCTTCGTCTACTACTGCAAGCACTGCGCCTCCCACGTCCTCATCACCGATACCCAATTGCAGAAAATGCCAAAGAGGAAGACTGACAGAGCACATGTACTAGACAAGAAAAAACATCTCTCAAGGCTAAATGTGAAGGAGGCAGGAAAGGTCCTGTTGAAACGGGGAGAAGGGAAGCTTGAAAAGCAGTTCCGTATGAGTTGTTTGGGATGCGGCCTTTTCGTTTGTTACCGATCAGAAGAGGAGTTGGAGCTAGCTCCATTCATATATGTTGTTGATGGAGCACTAAGCTCAGTGGCGGCTGAAACAAATCCACATGATGCACCTGTACCACCTTGCATCACACAATTGGAAGGTGGCCTTGTCCAAGTAGCCATTGAGGTTGAAGACCGGGCACAACGGTCAGCAATAACAAGAGTGAATGCTGATGATGTTCGAGTAACAGTTGCTGCTCCTGCTGCTCGAGGGGAAGCAAACAACGAA-CTACTAGAGTTCATGGGCAAGGTTCTTGGCTTAAGACTCAGTCAGATGACCCTTCAAAGAGGATGGAATAATAAGTCGAAGCTTCTGATTGTTGAAGATTTGTCAGCACGGCAAGTGTATGAGAAGCTCCTAGAAGCTGTCCAGCCTTAAATTTGTGGCAGCTCCTAACGGAGCAGAAGCAGAGGAGGTTTTGAAACATTGCTGGATTCATTAGCTTATCGGAGTTGCATTGTTTCGGTTGTAAACGTGAGTGAACATAGTCTAAGATGACCGTGATGTAACGCTGTCTCTGTGTACCCTTCTTAGTTGTGATACAAACTGTACATCTTTATAACAATCCTGCAACGTTTTTTTTTGGGTGACCAATTTCGAGTCCAAAGCTTATGGTTACTCTGATTATTGGTGNACATATATCATTTCATGGTTCCTCTCGAATGTAATCCATTTTACAGCTCATCGGTCAATAGGATCCGTANGCC-AGATGTGNTGTCTTCTAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK059375 [CGCCGCCGCTGCTACAGCCGTCGTCTCCCACCGCACGCCCCGCCCCGCCCCCCACCCATCGCCGGCGACGCGGATCCCTCCTCGACGGTGCGCCCGCCTGAGCAGCCGTGCTATACCTCTGTCGGGGGCATATTCCCCGCCGGCGCAGCAAGCTGAGCGGAGAGGAGGATGCCGAAGCGGACGACGCACACGTACTCCAGCGAGGACGCCCTGCCGGAGGGGCCCGAGTCCGACCTCTTCGTCTACTACTGCAAGCACTGCGCCTCCCACGTCCTCATCACCGATACCCAATTGCAGAAAATGCCAAAGAGGAAGACTGACAGAGCACATGTACTAGACAAGAAAAAACATCTCTCAAGGCTAAATGTGAAGGAGGCAGGAAAGGTCCTGTTGAAACGGGGAGAAGGGAAGCTTGAAAAGCAGTTCCGTATGAGTTGTTTGGGATGCGGCCTTTTCGTTTGTTACCGATCAGAAGAGGAGTTGGAGCTAGCTCCATTCATATATGTTGTTGATGGAGCACTAAGCTCAGTGGCGGCTGAAACAAATCCACATGATGCACCTGTACCACCTTGCATCACACAATTGGAAGGTGGCCTTGTCCAAGTAGCCATTGAGGTTGAAGACCGGGCACAACGGTCAGCAATAACAAGAGTGAATGCTGATGATGTTCGAGTAACAGTTGCTGCTCCTGCTGCTCGAGGGGAAGCAAACAACGAA CTACTAGAGTTCATGGGCAAGGTTCTTGGCTTAAGACTCAGTCAGATGACCCTTCAAAGAGGATGGAATAATAAGTCGAAGCTTCTGATTGTTGAAGATTTGTCAGCACGGCAAGTGTATGAGAAGCTCCTAGAAGCTGTCCAGCCTTAAATTTGTGGCAGCTCCTAACGGAGCAGAAGCAGAGGAGGTTTTGAAACATTGCTGGATTCATTAGCTTATCGGAGTTGCATTGTTTCGGTTGTAAACGTGAGTGAACATAGTCTAAGATGACCGTGATGTAACGCTGTCTCTGTGTACCCTTCTTAGTTGTGATACAAACTGTACATCTTTATAACAATCCTGCAA ]
[+] EMBL AK102836 [ TGCTACAGCCGTCGTCTCCCACCGCACGCCCCGCCCCGCCCCCCACCCATCGCCGGCGACGCGGATCCCTCCTCGACGGTGCGCCCGCCTGAGCAGCCGTGCTATACCTCTGTCGGGGGCATATTCCCCGCCGGCGCAGCAAGCTGAGCGGAGAGGAGGATGCCGAAGCGGACGACGCACACGTACTCCAGCGAGGACGCCCTGCCGGAGGGGCCCGAGTCCGACCTCTTCGTCTACTACTGCAAGCACTGCGCCTCCCACGTCCTCATCACCGATACCCAATTGCAGAAAATGCCAAAGAGGAAGACTGACAGAGCACATGTACTAGACAAGAAAAAACATCTCTCAAGGCTAAATGTGAAGGAGGCAGGAAAGGTCCTGTTGAAACGGGGAGAAGGGAAGCTTGAAAAGCAGTTCCGTATGAGTTGTTTGGGATGCGGCCTTTTCGTTTGTTACCGATCAGAAGAGGAGTTGGAGCTAGCTCCATTCATATATGTTGTTGATGGAGCACTAAGCTCAGTGGCGGCTGAAACAAATCCACATGATGCACCTGTACCACCTTGCATCACACAATTGGAAGGTGGCCTTGTCCAAGTAGCCATTGAGGTTGAAGACCGGGCACAACGGTCAGCAATAACAAGAGTGAATGCTGGTGATGTTCGAGTAACAGTTGCTGCTCCTGCTGCTCGAGGGGAAGCAAACAACGAA CTACTAGAGTTCATGGGCAAGGTTCTTGGCTTAAGACTCAGTCAGATGACCCTTCAAAGAGGATGGAATAATAAGTCGAAGCTTCTGATTGTTGAAGATTTGTCAGCACGGCAAGTGTATGAGAAGCTCCTAGAAGCTGTCCAGCCTTAAATTTGTGGCAGCTCCTAACGGAGCAGAAGCAGAGGAGGGTTTGAAACATTGCTGGATTCATTAGCTTATCGGAGTTGCATTGTTTCGGTTGTAAACGTGAGTGAACATAGTCTAAGATGACCGTGATGTAACGCTGTCTCTGTGTACCCTTCTTAGTTGTGATACAAACTGTACATCTTTATAACAATCCTGCAACGTTTTTTTTT ]
[+] EMBL CA766851 [ TGGAGCACTAAGCTCAGTGGCGGCTGAAACAAATCCACATGATGCACCTGTACCACCTTGCATCACACAATTGGAAGGTGGCCTTGTCCAAGTAGCCATTGAGGTTGAAGACCGGGCACAACGGTCAGCAATAACAAGAGTGAATGCTGATGATGTTCGAGTAACAGTTGCTGCTCCTGCTGCTCGAGGGGAAGCAAACAACGAA CTACTAGAGTTCATGGGCAAGGTTCTTGGCTTAAGACTCAGTCAGATGACCCTTCAAAGAGGATGGAATAATAAGTCAAAGCTTCTGATTGTTGAAGATTTGTCAGCACGGCAAGTGTATGAGAAGCTCCTAGAAGCTGTCCAGCCTTAAATTTGTGGCAGCTCCTAACGGAGCAGAAGCAGAGGAGGTTTTGAAACGTTGCTGGATTCATTAGCTTATCGGAGTTGCATTGTTTCGGTTGTAAACGTGAGTGAACATAGTCTAAGATGACCGTGATGTAACGCTGTCTTTGTGTACCCTTCTTAGTTGCGATACAAACTGTACATCTTTATAACAGTCCTGCAACGTTTTTTTTTGGGTGACCAATTTCGAGTCCAAAGCTTATGGTTACTCTGATTATTGGTGNACATATATCATTTCATGGTTCCTCTCGAATGTAATCCATTTTACAGCTCATCGGTCAATAGGATCCGTANGCC AGATGTGNTGTC ]
[-] EMBL CA759994 [ tcCCACATGATGCACCTGTACCACCTTGCATCACACAATTGGAAGGTGGCCTTGTCCAAGTAGCCATTGAGGTTGAAGACCGGGCACAACGGTCAGCAATAACAAGAGTGAATGCTGATGATGTTCGAGTAACAGTTGCTGCTCCTGCTGCTCGAGGGGAAGCAAACAACGAANCTACTAGAGTTCATGGGCAAGGTTCTTGGCTTAAGACTCAGTCAGATGACCCTTCAAAGAGGATGGAATAATAAGTCAAAGCTTCTGATTGTTGAAGATTTGTCAGCACGGCAAGTGTATGAGAAGCTCCTAGAAGCTGTCCAGCCTTAAATTTGTGGCAGCTCCTAACGGAGCAGAAGCAGAGGAGGTTTTGAAACGTTGCTGGATTCATTAGCTTATCGGAGTTGCATTGTTTCGGTTGTAAACGTGAGTGAACATAGTTTAAGATGACCGTGATGTAACGCTGTCTTTGTGTACCCTTTTTAGTTGCGATACAAACTGTACATCTTTATAACAGTCCTGCAACGTTTTTTTTTGGGTGACCAATTTCGAGTCCAAAGCTTATGGTTACTCTGATTATTGTTGTACATATATCATTTCATGTTTCCTCTCGAATGTAATCCATTTTACAGCTCATCGTTCAATAGGATCCGTAGGCCAAGATGTGTTGTTTTCTAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_8364#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 786 fasta sequence
[GGGGGAATAACTACACTAGATGTCTGGGGAACAACCCTGTTAAGTTATTAGGCTCTTCATATCTTTTATCTATTCCTTTTGATTCAGCTCAATAACTGACTCAGAAGTTGAATCTAATCCTTCGATCATGCCAACAACAATGTGGTGGATTTGGGTTCTGTTTCCTGATTTTTGTTTCTTAGAGAATTAGCCAAAGGTACTATCTGCAAGCCTACCACCTTGTTATATGAATGCCATTTGTAACTGTTGCAACTCTATCTTCAACTGGAGGGATTGTGCTTTATGACATATTGAGTCATTCTATTTAGTTGCTAACCTGCCAAAGGATATTTGGGATCACAAAATTAATTGCCGTGTTATATAATGCTCACCATTTTTTAAGTTTAAGGAACATGATTTTGTATTTAGTATCTATTGTTGAGACTGTAACTGTCTGGAAATTTCCCCATTCTGATGTGTTTGTTCTAAAGATACCCAATTGCAGAAAATGCCAAAGAGGAAGACTGACAGAGCACATGTACTAGACAAGAAAAAACATCTCTCAAGGCTAAACGTGAAGGAGGCAGGAAAGGTCCTGTTGAAACGGGGAGAAGGGAAGCTTGAAAAGCAGTTCCGTATGAGTTGTTTGGGATGCGGCCTTTTCGTTTGTTACCGATCAGAAGAGGAGTTGGAGCTAGCTCCATTCATATATGGTGGTGATGGAGCACTAAGCTCAGTGGCGGCTGAAACAAATCCACATGATGCACCTGTACCACCTTGCATCACACAATTGGNAGGNGGNCTTGG]
[+] EMBL CB096826 [GGGGGAATAACTACACTAGATGTCTGGGGAACAACCCTGTTAAGTTATTAGGCTCTTCATATCTTTTATCTATTCCTTTTGATTCAGCTCAATAACTGACTCAGAAGTTGAATCTAATCCTTCGATCATGCCAACAACAATGTGGTGGATTTGGGTTCTGTTTCCTGATTTTTGTTTCTTAGAGAATTAGCCAAAGGTACTATCTGCAAGCCTACCACCTTGTTATATGAATGCCATTTGTAACTGTTGCAACTCTATCTTCAACTGGAGGGATTGTGCTTTATGACATATTGAGTCATTCTATTTAGTTGCTAACCTGCCAAAGGATATTTGGGATCACAAAATTAATTGCCGTGTTATATAATGCTCACCATTTTTTAAGTTTAAGGAACATGATTTTGTATTTAGTATCTATTGTTGAGACTGTAACTGTCTGGAAATTTCCCCATTCTGATGTGTTTGTTCTAAAGATACCCAATTGCAGAAAATGCCAAAGAGGAAGACTGACAGAGCACATGTACTAGACAAGAAAAAACATCTCTCAAGGCTAAACGTGAAGGAGGCAGGAAAGGTCCTGTTGAAACGGGGAGAAGGGAAGCTTGAAAAGCAGTTCCGTATGAGTTGTTTGGGATGCGGCCTTTTCGTTTGTTACCGATCAGAAGAGGAGTTGGAGCTAGCTCCATTCATATATGGTGGTGATGGAGCACTAAGCTCAGTGGCGGCTGAAACAAATCCACATGATGCACCTGTACCACCTTGCATCACACAATTGGNAGGNGGNCTTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8364#0 ------------------------------------------------------------
consensus_8364#1 GGGGGAATAACTACACTAGATGTCTGGGGAACAACCCTGTTAAGTTATTAGGCTCTTCAT 60
consensus_8364#0 ------------------------------------------------------------
consensus_8364#1 ATCTTTTATCTATTCCTTTTGATTCAGCTCAATAACTGACTCAGAAGTTGAATCTAATCC 120
consensus_8364#0 -----------------------------------------------------------C 1
consensus_8364#1 TTCGATCATGCCAACAACAATGTGGTGGATTTGGGTTCTGTTTCCTGATTTTTGTTTCTT 180
consensus_8364#0 GCCGCCGCTGCTACAGCCGTCGTCTCCCACCGCACGCCCCGCCCCGCCCCCCACCCATCG 61
consensus_8364#1 AGAGAATTAGCCAAAGGTACTATCTGCAAGCCTACCACCTTGTTATATGAATGCCATTTG 240
* ** * ** *** * * * ** ** ** * *
consensus_8364#0 CCGGCGACGCGGATCCCTCCTCGAC-GGTGCGCCCGCCTGAGCAGCCGTGCTATACCTCT 120
consensus_8364#1 TAACTGTTGCAACTCTATCTTCAACTGGAGGGATTGTGCTTTATGACATATTGAGTCATT 300
* ** ** ** ** ** ** * * * * * * * * *
consensus_8364#0 GTCGGGGGCATATTCCCCGCCGGCGCAGCAAGCTGAGCGGAGAGGAGGATGCCGAAGCGG 180
consensus_8364#1 CTATTTAGTTGCTAACCTGCCAAAGGATATTTGGGATCACAAAATTAATTGCCGTGTTAT 360
* * * ** *** * * ** * * * *****
consensus_8364#0 ACGACGCACACG--TACTCCAGCGAGGACGCCCTGCCGGAGGGGCCCGAGTCCGACCTCT 238
consensus_8364#1 ATAATGCTCACCATTTTTTAAGTTTAAGGAACATGATTTTGTATTTAGTATCT-ATTGTT 419
* * ** *** * * ** * ** * * ** * *
consensus_8364#0 TCGTCTACTACTGC----AAGCACTGCGCCTCCCACGTCCTCATC--ACCGATACCCAAT 292
consensus_8364#1 GAGACTGTAACTGTCTGGAAATTTCCCCATTCTGATGTGTTTGTTCTAAAGATACCCAAT 479
* ** **** ** * ** * ** * * * **********
consensus_8364#0 TGCAGAAAATGCCAAAGAGGAAGACTGACAGAGCACATGTACTAGACAAGAAAAAACATC 352
consensus_8364#1 TGCAGAAAATGCCAAAGAGGAAGACTGACAGAGCACATGTACTAGACAAGAAAAAACATC 539
************************************************************
consensus_8364#0 TCTCAAGGCTAAATGTGAAGGAGGCAGGAAAGGTCCTGTTGAAACGGGGAGAAGGGAAGC 412
consensus_8364#1 TCTCAAGGCTAAACGTGAAGGAGGCAGGAAAGGTCCTGTTGAAACGGGGAGAAGGGAAGC 599
************* **********************************************
consensus_8364#0 TTGAAAAGCAGTTCCGTATGAGTTGTTTGGGATGCGGCCTTTTCGTTTGTTACCGATCAG 472
consensus_8364#1 TTGAAAAGCAGTTCCGTATGAGTTGTTTGGGATGCGGCCTTTTCGTTTGTTACCGATCAG 659
************************************************************
consensus_8364#0 AAGAGGAGTTGGAGCTAGCTCCATTCATATATGTTGTTGATGGAGCACTAAGCTCAGTGG 532
consensus_8364#1 AAGAGGAGTTGGAGCTAGCTCCATTCATATATGGTGGTGATGGAGCACTAAGCTCAGTGG 719
********************************* ** ***********************
consensus_8364#0 CGGCTGAAACAAATCCACATGATGCACCTGTACCACCTTGCATCACACAATTGGAAGGTG 592
consensus_8364#1 CGGCTGAAACAAATCCACATGATGCACCTGTACCACCTTGCATCACACAATTGGNAGGNG 779
****************************************************** *** *
consensus_8364#0 GCCTTGTCCAAGTAGCCATTGAGGTTGAAGACCGGGCACAACGGTCAGCAATAACAAGAG 652
consensus_8364#1 GNCTTGG----------------------------------------------------- 786
* ****
consensus_8364#0 TGAATGCTGATGATGTTCGAGTAACAGTTGCTGCTCCTGCTGCTCGAGGGGAAGCAAACA 712
consensus_8364#1 ------------------------------------------------------------
consensus_8364#0 ACGAACTACTAGAGTTCATGGGCAAGGTTCTTGGCTTAAGACTCAGTCAGATGACCCTTC 772
consensus_8364#1 ------------------------------------------------------------
consensus_8364#0 AAAGAGGATGGAATAATAAGTCGAAGCTTCTGATTGTTGAAGATTTGTCAGCACGGCAAG 832
consensus_8364#1 ------------------------------------------------------------
consensus_8364#0 TGTATGAGAAGCTCCTAGAAGCTGTCCAGCCTTAAATTTGTGGCAGCTCCTAACGGAGCA 892
consensus_8364#1 ------------------------------------------------------------
consensus_8364#0 GAAGCAGAGGAGGTTTTGAAACATTGCTGGATTCATTAGCTTATCGGAGTTGCATTGTTT 952
consensus_8364#1 ------------------------------------------------------------
consensus_8364#0 CGGTTGTAAACGTGAGTGAACATAGTCTAAGATGACCGTGATGTAACGCTGTCTCTGTGT 1012
consensus_8364#1 ------------------------------------------------------------
consensus_8364#0 ACCCTTCTTAGTTGTGATACAAACTGTACATCTTTATAACAATCCTGCAACGTTTTTTTT 1072
consensus_8364#1 ------------------------------------------------------------
consensus_8364#0 TGGGTGACCAATTTCGAGTCCAAAGCTTATGGTTACTCTGATTATTGGTGNACATATATC 1132
consensus_8364#1 ------------------------------------------------------------
consensus_8364#0 ATTTCATGGTTCCTCTCGAATGTAATCCATTTTACAGCTCATCGGTCAATAGGATCCGTA 1192
consensus_8364#1 ------------------------------------------------------------
consensus_8364#0 NGCCAGATGTGNTGTCTTCTAAAAAAAAAAAAAAAAAAAAAAAA 1236
consensus_8364#1 --------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||