Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8370 cluster # 8370       Sequences # 5       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8370#0 length = 1201 sequences # 5  
consensusID : consensus_8370#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1201
fasta sequence 
                              [AACAGAGGGAAGCAGAGTAGCCGAGAGCGAGCGAGAGACGCAGAGAAGCGAGCAGGGCGG-GGCCATGGCCATGGCTCGCTGTTCCTTGCTACCGATCTTGGCCGCCGTCCTCTTGGCGGCGTCGCTGTCGCTGCCACCGCGCGCTGCCGCGTACGCCGCCATGGTGGACAGCCTCCTCCCCGCGTCAGCGACGGCTCTCTCCTTCGAGGAAGGCTACACCCAGCTGTTCGGCGACTCCAACCTCATGCTCCACGGCGACGGGAAGAGAGTGCACATCTCCCTCGACGAGCGGACAGGCGCCGGGTTCGCCTCGCAGGGCGCGTACCACCACGGGTTCTTCAGCGCCAGCATCAAGCTTCCCGCCGACCACACTGCCGGCGTCGTCGTCGCTTTCTACATGTCGAACGGGGACGTGTACGAGAGGACGCACGACGAGCTGGACTTCGAGTTCCTGGGGAACGTGAGGGGGAGGGAGTGGAGGGTGCAGACCAACGTGTACGGCAACGGCAGCACGGCGGCCGGCCGGGAGGAGAGGTACGGCCTCTGGTTCGACCCCACCCAGGACTTCCACCGCTACGCCATCCGCTGGAGCCATGACACGATCATATTCTACGTTGACGAGACGCCGATCAGGGAGGTGGTGAGGACGGCGTCCATGGGCGCGCAGTTCCCGTCCAAGCCCATGTCGCTGTACGCCACCATCTGGGACGGCTCGAGCTGGGCCACCTCGGGCGGCCGGTACAAGGTGAACTACAAGTACGCGCCCTACGTCGCCGAGTTCACCGACCTCCTGCTCCACGGCTGCCCCGCCGGCTCCCCGCCGCCGTGCGAGGGCGCCGCCGCCTCCGCGACGATGCCGCCCGGGCAGCGGTCGGCGATGGAGAGGTTCCGGGCGAGGCACATGACGTACGGGTACTGCTACGACCGCGTCCGGTACCACGCGCCGCTGCCGGAGTGCAGCGTCGGCGCGGAGGCCGAGGCGTTCCTCCCGTCCGGCGAGGCGAGGTCGACGGACCGCCGCGGCGGCAGGCACGGCAAGCGCCACCGGCGCGCCGGCGGCGGCGTGGATTCCGCGCTCTGACCGATTCTGTGATCCGCACAGCGCCGCTCGCGATGGTGGCGCGCGTGCTCGACTGTACTATCGTGCCGTGTGTGATGTCGTACGTGATTATAGTTTCCTGGTCAAAAAAAAAAAAAAAAA]

[+] EMBL AK061284             [AACAGAGGGAAGCAGAGTAGCCGAGAGCGAGCGAGAGACGCAGAGAAGCGAGCAGGGCGG GGCCATGGCCATGGCTCGCTGTTCCTTGCTACCGATCTTGGCCGCCGTCCTCTTGGCGGCGTCGCTGTCGCTGCCACCGCGCGCTGCCGCGTACGCCGCCATGGTGGACAGCCTCCTCCCCGCGTCAGCGACGGCTCTCTCCTTCGAGGAAGGCTACACCCAGCTGTTCGGCGACTCCAACCTCATGCTCCACGGCGACGGGAAGAGAGTGCACATCTCCCTCGACGAGCGGACAGGCGCCGGGTTCGCCTCGCAGGGCGCGTACCACCACGGGTTCTTCAGCGCCAGCATCAAGCTTCCCGCCGACCACACTGCCGGCGTCGTCGTCGCTTTCTACATGTCGAACGGGGACGTGTACGAGAGGACGCACGACGAGCTGGACTTCGAGTTCCTGGGGAACGTGAGGGGGAGGGAGTGGAGGGTGCAGACCAACGTGTACGGCAACGGCAGCACGGCGGCCGGCCGGGAGGAGAGGTACGGCCTCTGGTTCGACCCCACCCAGGACTTCCACCGCTACGCCATCCGCTGGAGCCATGACACGATCATATTCTACGTTGACGAGACGCCGATCAGGGAGGTGGTGAGGACGGCGTCCATGGGCGCGCAGTTCCCGTCCAAGCCCATGTCGCTGTACGCCACCATCTGGGACGGCTCGAGCTGGGCCACCTCGGGCGGCCGGTACAAGGTGAACTACAAGTACGCGCCCTACGTCGCCGAGTTCACCGACCTCCTGCTCCACGGCTGCCCCGCCGGCTCCCCGCCGCCGTGCGAGGGCGCCGCCGCCTCCGCGACGATGCCGCCCGGGCAGCGGTCGGCGATGGAGAGGTTCCGGGCGAGGCACATGACGTACGGGTACTGCTACGACCGCGTCCGGTACCACGCGCCGCTGCCGGAGTGCAGCGTCGGCGCGGAGGCCGAGGCGTTCCTCCCGTCCGGCGAGGCGAGGTCGACGGACCGCCGCGGCGGCAGGCACGGCAAGCGCCACCGGCGCGCCGGCGGCGGCGTGGATTCCGCGCTCTGACCGATTCTGTGATCCGCACAGCGCCGCTCGCGATGGTGGCGCGCGTGCTCGACTGTACTATCGTGCCGTGTGTGATGTCGTACGTGATTATAGT                          ]
[+] EMBL C74433               [           GCAGAGTAGCCGAGAGCGAGCGAGAGACGCAGAGAAGCGAGCAGGGCGGTGGCCATGGCCATGGCTCGCTGTTCCTTGCTACCGATCTTGGCCGCCGTCCTCTTGGCGGCGTCGCTGTCGCTGCCACCGCGCGCTGCCG GTACGCCGCCATGGTGGACAGCCTCCTCCCCGCGTCAG AACGGCTCTCTCCTTCGAGGAAGGCTACACCCAGCTGTTCGGCGACTCCAACCTCATGCTCCACGGCGACGGGAAGAGAGTTCACATCTCCCTCGACGAGCGGACAGGCGCCGGGTTCGCCTCGCAGGGNGCGTACCAac                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CF303876             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             gCTCTGGTTCGACCCCACCCAGGACTTCCACCGCTACGCCATCCGCTGGAGCCATGACACGATCATATTCTACGTTGACGAGACGCCGATCAGGGAGGTGGTGAGGACGGCGTCCATGGGCGCGCAGTTCCCGTCCAAGCCCATGTCGCTGTACGCCACCATCTGGGACGGCTCGAGCTGGGCCACCTCGGGCGGCCGGTACAAGGTGAACTACAAGTACGCGCCCTACGTCGCCGAGTTCACCGACCTCCTGCTCCACGGCTGCCCCGCCGGCTCCCCGCCGCCGTGCGAGGGCGCCGCCGCCTCCGCGACGATGCCGCCCGGGCAGCGGTCGGCGATGGAGAGGTTCCGGGCGAGGCACATGACGTACGGGTACTGCTACGACCGCGTCCGGTACCACGCGCCGCTGCCGGAGTGCAGCGTCGGCGCGGAGGCCGAGGCGTTCCTCCCGTCCGGCGAGGCGAGGTCGACGGAC                                                                                                                                                                                          ]
[+] EMBL CF304955             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TCTGGTTCGACCCCACCCAGGACTTCCACCGCTACGCCATCCGCTGGAGCCATGACACGATCATATTCTACGTTGACGAGACGCCGATCAGGGAGGTGGTGAGGACGGCGTCCATGGGCGCGCAGTTCCCGTCCAAGCCCATGTCGCTGTACGCCACCATCTGGGACGGCTCGAGCTGGGCCACCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU029705             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AGGCGTTCCTCCCGTCCGGCGAGGCGAGGTCGACGGACCGCCGCGGCGGCAGGCACGGCAAG GCCACCGGCGC CCGGCGGCGGCGTGGATTCCGCGCTCTGACCGATTCTGTGATCCGCACAGCGCCGCTCGCGATGGTGGCGCGCGTGCTCGACTGTACTATCGTGCCGTGTGTGATGTCGTACGTGATTATNGTTTCCTGGTCAAAAAAAAAAAAAAAAA]




>consensus_8370#0
AACAGAGGGAAGCAGAGTAGCCGAGAGCGAGCGAGAGACGCAGAGAAGCGAGCAGGGCGG
GGCCATGGCCATGGCTCGCTGTTCCTTGCTACCGATCTTGGCCGCCGTCCTCTTGGCGGC
GTCGCTGTCGCTGCCACCGCGCGCTGCCGCGTACGCCGCCATGGTGGACAGCCTCCTCCC
CGCGTCAGCGACGGCTCTCTCCTTCGAGGAAGGCTACACCCAGCTGTTCGGCGACTCCAA
CCTCATGCTCCACGGCGACGGGAAGAGAGTGCACATCTCCCTCGACGAGCGGACAGGCGC
CGGGTTCGCCTCGCAGGGCGCGTACCACCACGGGTTCTTCAGCGCCAGCATCAAGCTTCC
CGCCGACCACACTGCCGGCGTCGTCGTCGCTTTCTACATGTCGAACGGGGACGTGTACGA
GAGGACGCACGACGAGCTGGACTTCGAGTTCCTGGGGAACGTGAGGGGGAGGGAGTGGAG
GGTGCAGACCAACGTGTACGGCAACGGCAGCACGGCGGCCGGCCGGGAGGAGAGGTACGG
CCTCTGGTTCGACCCCACCCAGGACTTCCACCGCTACGCCATCCGCTGGAGCCATGACAC
GATCATATTCTACGTTGACGAGACGCCGATCAGGGAGGTGGTGAGGACGGCGTCCATGGG
CGCGCAGTTCCCGTCCAAGCCCATGTCGCTGTACGCCACCATCTGGGACGGCTCGAGCTG
GGCCACCTCGGGCGGCCGGTACAAGGTGAACTACAAGTACGCGCCCTACGTCGCCGAGTT
CACCGACCTCCTGCTCCACGGCTGCCCCGCCGGCTCCCCGCCGCCGTGCGAGGGCGCCGC
CGCCTCCGCGACGATGCCGCCCGGGCAGCGGTCGGCGATGGAGAGGTTCCGGGCGAGGCA
CATGACGTACGGGTACTGCTACGACCGCGTCCGGTACCACGCGCCGCTGCCGGAGTGCAG
CGTCGGCGCGGAGGCCGAGGCGTTCCTCCCGTCCGGCGAGGCGAGGTCGACGGACCGCCG
CGGCGGCAGGCACGGCAAGCGCCACCGGCGCGCCGGCGGCGGCGTGGATTCCGCGCTCTG
ACCGATTCTGTGATCCGCACAGCGCCGCTCGCGATGGTGGCGCGCGTGCTCGACTGTACT
ATCGTGCCGTGTGTGATGTCGTACGTGATTATAGTTTCCTGGTCAAAAAAAAAAAAAAAA
A

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)