These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8372#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 765 fasta sequence [TTTTTTTTTTTTTCCAGTAACCACAACTTTATAATCACTAGCACGCGAGTACAGAAGTCTTACATCACTGATGTTTACTACATATATAGTATAGCTGGAATGTTCAAAACCACACACAATGCCAAATGCAGGCTAGTTTTTTTGCAAGATCAACACTGATTTGCTTTACAACCTAAAAGTATACACAGACAATCCCTTTCTTCTTTTATTTATAACCAAGCAATCGACCACAATCTTCTTAACACAGTAACAATATATCAATATGCTTTCCTTCAACAACTAGCCACAGGAAGGAATATAGTTTATATTGGAGTTATTTCCTTGCTGGAACCTCAGATGCTTCCACCCC-TCAGTCGGTCAGTTCCATGCTCCCTGTGTATTGTACTTGGGGAACGGGACTCGCCTTGCCTCAATCAGCTTGATATCGTCCACGAGGATCTCGAAGTGGAGGCGCACCTCGTCGGCTGTCTTGGTGCCCCTCATGGCGCGGGACACCTTGTGCCAGAGATCAGGCGCGCCCTCGCCGTAGTAGGCAATGGCCTGCTCGAACAGCTTGTTCTCCTCTTTGCTCCACTCTGACGCCATGTTGCTGTTGCGGGACGAGCTACGTGACCCAGCAGAAGACATCCTGCAGCTTGGATTTGATTAAACTAGCTAGCTACTGTCTTCTTTGGAAGTTGAACGCTAAGTAACTTGCTAACTAGTGTGCAGCTAGACTGAAG-TTTTTTTTGGACTTCAGAAGAGATCTATCGATCTCTGCTGTGT] [+] EMBL CF300298 [TTTTTTTTTTTTTCCAGTAACCACAACTTTATAATCACTAGCACGCGAGTACAGAAGTCTTACATCACTGATGTTTACTACATATATAGTATAGCTGGAATGTTCAAAACCACACACAATGCCAAATGCAGGCTAGTTTTTTTGCAAGATCAACACTGATTTGCTTTACAACCTAAAAGTATACACAGACAATCCCTTTCTTCTTTTATTTATAACCAAGCAATCGACCACAATCTTCTTAACACAGTAACAATATATCAATATGCTTTCCTTCAACAACTAGCCACAGGAAGGAATATAGTTTATATTGGAGTTATTTCCTTGCTGGAACCTCAGATGCTTCCACCCC TCAGTCGGTCAGTTCCATGCTCCCTGTGTATTGTACTTGGGGAACGGGACTCGCCTTGCCTCAAT ] [-] EMBL CF292779 [ AGACAATCCCTTTCTTCTTTTATTTATAACCAAGCAATCGACCACAATCTTCTTAACACAGTAACAATATATCAATATGCTTTCCTTCAACAACTAGCCACAGGAAGGAATATAGTTTATATTGGAGTTATTTCCTTGCTGGAACCTCAGATGCTTCCACCCC TCAGTCGGTCAGTTCCATGCTCCCTGTGTATTGTACTTGGGGAACGGGACTCGCCTTGCCTCAATCAGCTTGATATCGTCCACGAGGATCTCGAAGTGGAGGCGCACCTCGTCGGCTGTCTTGGTGCCCCTCATGGCGCGGGACACCTTGTGCCAGAGATCAGGCGCGCCCTCGCCGTAGTAGGCAATGGCCTGCTCGAACAGCTTGTTCTCCTCTTTGCTCCACTCTGACGCCATGTTGCTGTTGCGGGACGAGCTACGTGACCCAGCAGAAGACATCCTGCAGCTTGGATTTGATTAAACTAGCTAGCTACTGTCTTCTTTGGAAGTTGAACGCTAAGTAACTTGCTAACTAGTGTGCAGCTAGACTGAAG TTTTTTTTGGACTTCAGAAGAGATCTATCGATCTCTGCTGTGT] [-] EMBL CF300297 [ TATCAATATGCTTTCCTTCAACAACTAGCCACAGGAAGGAATATAGTTTATATTGGAGTTATTTCCTTGCTGGAACCTCAGATGCTTCCACCCCNTCAGTCGGTCAGTTCCATGCTCCCTGTGTATTGTACTTGGGGAACGGGACTCGCCTTGCCTCAATCAGCTTGATATCGTCCACGAGGATCTCGAAGTGGAGGCGCACCTCGTCGGCTGTCTTGGTGCCCCCCATGGCGCGGGACACCTTGTGCCAGAGATCAGGCGCGCCCTCGCCGTAGTAGGCAATGGCCTGCTCGAACAGCTTGTTCTCCTCTTTGCTCCACTCTGACGCCATGTTGCTGTTGCGGGACGAGCTACGTGACCCAGCAGAAGACATCCTGCAGCTTGGATTTGATTAAACTAGCTAGCTACTGTCTTCTTTGGAAGTTGAACGCTAAGTAACTTGCTAACTAGTGTGGAGCTAGACTGAAGTTTTTTTTTGGACTTCAGAAGAGATCTATCGATCTCTGCTG ] consensusID : consensus_8372#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 661 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTCTAGCAGGCACAACTTTATAATCACTAGCACACAAGTACAGAAGTCTTACATCACTGATGTTTACTACATAATTTAGCTGGAAGGTTTAACAACCACACACAATGCCAAAGGCAGGCTAGTTTCTGCAAAATCGACACTGATTTGCTTTACAACCTAAAGTATGTACAAACAAGGCTTTTCTTCTTTTATTTATAACCAAGCGACCACAATCTTTTTAGGCAATAACAATATCAATATACTTCCTTGATTCCTTCAGTAACTTAGCCACAGCTAGCAGGGAATATAATTTATATGGGAATTTTTTTCCTGTTGTCGGGAACCTCAAATGCTTCCACCCCTATCAGTTCCATGCTCCCTGGGTATTGTACTTGGGGAACGGGACTCTTCTTGCCTCTATCAGCTTGAGGTCGCCCTCGAGGATCTCATAGGGGCGGCACACCTCATCGGCTGTCTTGGTGCCTCCCATGGCGCGAGACACCTTGTGAAAGAGGTCAGGCGCACCCTCGCCGTATTAGGCAAGAGCCTCCTCGAACAGCTTGTTCTCCTTTTTGCTCACTCTGAGCCCATGTTGACACTGTTGCTGTTGCGGGAGGAGCTGTTTGACCTAGAAAAATCCTTGGATTGGACTACGGCTTTTC] [+] EMBL CA760148 [TTTTTTTTTTTTTTTTTTTTTTCTAGCAGGCACAACTTTATAATCACTAGCACACAAGTACAGAAGTCTTACATCACTGATGTTTACTACATAATTTAGCTGGAAGGTTTAACAACCACACACAATGCCAAAGGCAGGCTAGTTTCTGCAAAATCGACACTGATTTGCTTTACAACCTAAAGTATGTACAAACAAGGCTTTTCTTCTTTTATTTATAACCAAGCGACCACAATCTTTTTAGGCAATAACAATATCAATATACTTCCTTGATTCCTTCAGTAACTTAGCCACAGCTAGCAGGGAATATAATTTATATGGGAATTTTTTTCCTGTTGTCGGGAACCTCAAATGCTTCCACCCCTATCAGTTCCATGCTCCCTGGGTATTGTACTTGGGGAACGGGACTCTTCTTGCCTCTATCAGCTTGAGGTCGCCCTCGAGGATCTCATAGGGGCGGCACACCTCATCGGCTGTCTTGGTGCCTCCCATGGCGCGAGACACCTTGTGAAAGAGGTCAGGCGCACCCTCGCCGTATTAGGCAAGAGCCTCCTCGAACAGCTTGTTCTCCTTTTTGCTCACTCTGAGCCCATGTTGACACTGTTGCTGTTGCGGGAGGAGCTGTTTGACCTAGAAAAATCCTTGGATTGGACTACGGCTTTTC] consensusID : consensus_8372#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [TTTTTGAAACCAATTGGTCGATTGAGCATGTGAGATTCTAGTAACCACAACTTTATAATCACTAGCACGCGAGTACAGAAGTCTTACATCACTGATGTTTACTACATATATAGTATAGCTGGAATGTTCAAAACCACACACAATGCCAAATGCAGGCTAGTTTTTTTGCAAGATCAACACTGATTTGCTTTACAACCTAAAAGTATATACAGACAATCCCTTTCTTCTTTTATTTATAACCAAGCAATCGACCACAATCTTCTTAACACAGTAACAATATATCAATATGCTTTCCTTCAACAACTAGCCACAGGAAGGAATATAGTTTATATTGGAGTTATTTCCTTGCTGGAACCTCAGATGCTTCCACCCCTCAGTCGGTCAGTTCCATGCTCCCTGTGTATTGTACTTGGGGAACGGGACTCGCCTTGCCTCAATCAGC] [+] EMBL CF292780 [TTTTTGAAACCAATTGGTCGATTGAGCATGTGAGATTCTAGTAACCACAACTTTATAATCACTAGCACGCGAGTACAGAAGTCTTACATCACTGATGTTTACTACATATATAGTATAGCTGGAATGTTCAAAACCACACACAATGCCAAATGCAGGCTAGTTTTTTTGCAAGATCAACACTGATTTGCTTTACAACCTAAAAGTATATACAGACAATCCCTTTCTTCTTTTATTTATAACCAAGCAATCGACCACAATCTTCTTAACACAGTAACAATATATCAATATGCTTTCCTTCAACAACTAGCCACAGGAAGGAATATAGTTTATATTGGAGTTATTTCCTTGCTGGAACCTCAGATGCTTCCACCCCTCAGTCGGTCAGTTCCATGCTCCCTGTGTATTGTACTTGGGGAACGGGACTCGCCTTGCCTCAATCAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8372#0 ------------------------TTTTTTTTTTTTTCCAGTAACCACAACTTTATAATC 36 consensus_8372#2 TTTTTGAAACCAATTGGTCGATTGAGCATGTGAGATTCTAGTAACCACAACTTTATAATC 60 consensus_8372#1 ---------------TTTTTTTTTTTTTTTTTTTTTTCTAGCAGGCACAACTTTATAATC 45 * * *** ** * *************** consensus_8372#0 ACTAGCACGCGAGTACAGAAGTCTTACATCACTGATGTTTACTACATATATAGTATAGCT 96 consensus_8372#2 ACTAGCACGCGAGTACAGAAGTCTTACATCACTGATGTTTACTACATATATAGTATAGCT 120 consensus_8372#1 ACTAGCACACAAGTACAGAAGTCTTACATCACTGATGTTTACTACA----TAATTTAGCT 101 ******** * *********************************** ** * ***** consensus_8372#0 GGAATGTTCAA-AACCACACACAATGCCAAATGCAGGCTAGTTTTTTTGCAAGATCAACA 155 consensus_8372#2 GGAATGTTCAA-AACCACACACAATGCCAAATGCAGGCTAGTTTTTTTGCAAGATCAACA 179 consensus_8372#1 GGAAGGTTTAACAACCACACACAATGCCAAAGGCAGGCTAGTTTCT--GCAAAATCGACA 159 **** *** ** ******************* ************ * **** *** *** consensus_8372#0 CTGATTTGCTTTACAACCTAAAAGTATACACAGACAATCCCTTTCTTCTTTTATTTATAA 215 consensus_8372#2 CTGATTTGCTTTACAACCTAAAAGTATATACAGACAATCCCTTTCTTCTTTTATTTATAA 239 consensus_8372#1 CTGATTTGCTTTACAACCTAAA-GTATGTACAAACAAGGCTTTTCTTCTTTTATTTATAA 218 ********************** **** *** **** * ******************* consensus_8372#0 CCAAGCAATCGACCACAATCTTCTTAACACAGTAACAATATATCAATATGCTT------- 268 consensus_8372#2 CCAAGCAATCGACCACAATCTTCTTAACACAGTAACAATATATCAATATGCTT------- 292 consensus_8372#1 CCAAGC----GACCACAATCTTTTTAG-GCAATAACAATAT--CAATATACTTCCTTGAT 271 ****** ************ *** ** ********* ****** *** consensus_8372#0 TCCTTCAACAACT-AGCCACAGG----AAGGAATATAGTTTATATTGGAGTTATTTCCTT 323 consensus_8372#2 TCCTTCAACAACT-AGCCACAGG----AAGGAATATAGTTTATATTGGAGTTATTTCCTT 347 consensus_8372#1 TCCTTCAGTAACTTAGCCACAGCTAGCAGGGAATATAATTTATATGGGAATTTTTTTCCT 331 ******* **** ******** * ******** ******* *** ** *** * * consensus_8372#0 GCTG----GAACCTCAGATGCTTCCACCCCTCAGTCGGTCAGTTCCATGCTCCCTGTGTA 379 consensus_8372#2 GCTG----GAACCTCAGATGCTTCCACCCCTCAGTCGGTCAGTTCCATGCTCCCTGTGTA 403 consensus_8372#1 GTTGTCGGGAACCTCAAATGCTTCCACCCCT------ATCAGTTCCATGCTCCCTGGGTA 385 * ** ******** ************** ****************** *** consensus_8372#0 TTGTACTTGGGGAACGGGACTCGCCTTGCCTCAATCAGCTTGATATCGTCCACGAGGATC 439 consensus_8372#2 TTGTACTTGGGGAACGGGACTCGCCTTGCCTCAATCAGC--------------------- 442 consensus_8372#1 TTGTACTTGGGGAACGGGACTCTTCTTGCCTCTATCAGCTTGAGGTCGCCCTCGAGGATC 445 ********************** ******** ****** consensus_8372#0 TCGAAGTGGAGGCGCACCTCGTCGGCTGTCTTGGTGCCCCTCATGGCGCGGGACACCTTG 499 consensus_8372#2 ------------------------------------------------------------ consensus_8372#1 TCATAGGGGCGGCACACCTCATCGGCTGTCTTGGTGCCTCCCATGGCGCGAGACACCTTG 505 consensus_8372#0 TGCCAGAGATCAGGCGCGCCCTCGCCGTAGTAGGCAATGGCCTGCTCGAACAGCTTGTTC 559 consensus_8372#2 ------------------------------------------------------------ consensus_8372#1 TGAAAGAGGTCAGGCGCACCCTCGCCGTATTAGGCAAGAGCCTCCTCGAACAGCTTGTTC 565 consensus_8372#0 TCCTCTTTGCTCCACTCTGACGCCATGTTGCTGTTGCGGGACGAGCTACGTGACCCAGCA 619 consensus_8372#2 ------------------------------------------------------------ consensus_8372#1 TCCTTTTTGCTC-ACTCTGAGCCCATGTTGACACTGTTGCTGTTGCGGGAGGAGCT-GTT 623 consensus_8372#0 GAAGACATCCTGCAGCTTGGATTTGATTAAACTAGCTAGCTACTGTCTTCTTTGGAAGTT 679 consensus_8372#2 ------------------------------------------------------------ consensus_8372#1 TGACCTAGAAAAATCCTTGGATTGGACTACGGCTTTTC---------------------- 661 consensus_8372#0 GAACGCTAAGTAACTTGCTAACTAGTGTGCAGCTAGACTGAAGTTTTTTTTGGACTTCAG 739 consensus_8372#2 ------------------------------------------------------------ consensus_8372#1 ------------------------------------------------------------ consensus_8372#0 AAGAGATCTATCGATCTCTGCTGTGT 765 consensus_8372#2 -------------------------- consensus_8372#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||