Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8372 cluster # 8372       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8372#0 length = 765 sequences # 3  
consensus_8372#1 length = 661 sequences # 1  
consensus_8372#2 length = 442 sequences # 1  

consensusID : consensus_8372#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 765
fasta sequence
                              [TTTTTTTTTTTTTCCAGTAACCACAACTTTATAATCACTAGCACGCGAGTACAGAAGTCTTACATCACTGATGTTTACTACATATATAGTATAGCTGGAATGTTCAAAACCACACACAATGCCAAATGCAGGCTAGTTTTTTTGCAAGATCAACACTGATTTGCTTTACAACCTAAAAGTATACACAGACAATCCCTTTCTTCTTTTATTTATAACCAAGCAATCGACCACAATCTTCTTAACACAGTAACAATATATCAATATGCTTTCCTTCAACAACTAGCCACAGGAAGGAATATAGTTTATATTGGAGTTATTTCCTTGCTGGAACCTCAGATGCTTCCACCCC-TCAGTCGGTCAGTTCCATGCTCCCTGTGTATTGTACTTGGGGAACGGGACTCGCCTTGCCTCAATCAGCTTGATATCGTCCACGAGGATCTCGAAGTGGAGGCGCACCTCGTCGGCTGTCTTGGTGCCCCTCATGGCGCGGGACACCTTGTGCCAGAGATCAGGCGCGCCCTCGCCGTAGTAGGCAATGGCCTGCTCGAACAGCTTGTTCTCCTCTTTGCTCCACTCTGACGCCATGTTGCTGTTGCGGGACGAGCTACGTGACCCAGCAGAAGACATCCTGCAGCTTGGATTTGATTAAACTAGCTAGCTACTGTCTTCTTTGGAAGTTGAACGCTAAGTAACTTGCTAACTAGTGTGCAGCTAGACTGAAG-TTTTTTTTGGACTTCAGAAGAGATCTATCGATCTCTGCTGTGT]

[+] EMBL CF300298             [TTTTTTTTTTTTTCCAGTAACCACAACTTTATAATCACTAGCACGCGAGTACAGAAGTCTTACATCACTGATGTTTACTACATATATAGTATAGCTGGAATGTTCAAAACCACACACAATGCCAAATGCAGGCTAGTTTTTTTGCAAGATCAACACTGATTTGCTTTACAACCTAAAAGTATACACAGACAATCCCTTTCTTCTTTTATTTATAACCAAGCAATCGACCACAATCTTCTTAACACAGTAACAATATATCAATATGCTTTCCTTCAACAACTAGCCACAGGAAGGAATATAGTTTATATTGGAGTTATTTCCTTGCTGGAACCTCAGATGCTTCCACCCC TCAGTCGGTCAGTTCCATGCTCCCTGTGTATTGTACTTGGGGAACGGGACTCGCCTTGCCTCAAT                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CF292779             [                                                                                                                                                                                          AGACAATCCCTTTCTTCTTTTATTTATAACCAAGCAATCGACCACAATCTTCTTAACACAGTAACAATATATCAATATGCTTTCCTTCAACAACTAGCCACAGGAAGGAATATAGTTTATATTGGAGTTATTTCCTTGCTGGAACCTCAGATGCTTCCACCCC TCAGTCGGTCAGTTCCATGCTCCCTGTGTATTGTACTTGGGGAACGGGACTCGCCTTGCCTCAATCAGCTTGATATCGTCCACGAGGATCTCGAAGTGGAGGCGCACCTCGTCGGCTGTCTTGGTGCCCCTCATGGCGCGGGACACCTTGTGCCAGAGATCAGGCGCGCCCTCGCCGTAGTAGGCAATGGCCTGCTCGAACAGCTTGTTCTCCTCTTTGCTCCACTCTGACGCCATGTTGCTGTTGCGGGACGAGCTACGTGACCCAGCAGAAGACATCCTGCAGCTTGGATTTGATTAAACTAGCTAGCTACTGTCTTCTTTGGAAGTTGAACGCTAAGTAACTTGCTAACTAGTGTGCAGCTAGACTGAAG TTTTTTTTGGACTTCAGAAGAGATCTATCGATCTCTGCTGTGT]
[-] EMBL CF300297             [                                                                                                                                                                                                                                                               TATCAATATGCTTTCCTTCAACAACTAGCCACAGGAAGGAATATAGTTTATATTGGAGTTATTTCCTTGCTGGAACCTCAGATGCTTCCACCCCNTCAGTCGGTCAGTTCCATGCTCCCTGTGTATTGTACTTGGGGAACGGGACTCGCCTTGCCTCAATCAGCTTGATATCGTCCACGAGGATCTCGAAGTGGAGGCGCACCTCGTCGGCTGTCTTGGTGCCCCCCATGGCGCGGGACACCTTGTGCCAGAGATCAGGCGCGCCCTCGCCGTAGTAGGCAATGGCCTGCTCGAACAGCTTGTTCTCCTCTTTGCTCCACTCTGACGCCATGTTGCTGTTGCGGGACGAGCTACGTGACCCAGCAGAAGACATCCTGCAGCTTGGATTTGATTAAACTAGCTAGCTACTGTCTTCTTTGGAAGTTGAACGCTAAGTAACTTGCTAACTAGTGTGGAGCTAGACTGAAGTTTTTTTTTGGACTTCAGAAGAGATCTATCGATCTCTGCTG   ]


>consensus_8372#0 TTTTTTTTTTTTTCCAGTAACCACAACTTTATAATCACTAGCACGCGAGTACAGAAGTCT TACATCACTGATGTTTACTACATATATAGTATAGCTGGAATGTTCAAAACCACACACAAT GCCAAATGCAGGCTAGTTTTTTTGCAAGATCAACACTGATTTGCTTTACAACCTAAAAGT ATACACAGACAATCCCTTTCTTCTTTTATTTATAACCAAGCAATCGACCACAATCTTCTT AACACAGTAACAATATATCAATATGCTTTCCTTCAACAACTAGCCACAGGAAGGAATATA GTTTATATTGGAGTTATTTCCTTGCTGGAACCTCAGATGCTTCCACCCCTCAGTCGGTCA GTTCCATGCTCCCTGTGTATTGTACTTGGGGAACGGGACTCGCCTTGCCTCAATCAGCTT GATATCGTCCACGAGGATCTCGAAGTGGAGGCGCACCTCGTCGGCTGTCTTGGTGCCCCT CATGGCGCGGGACACCTTGTGCCAGAGATCAGGCGCGCCCTCGCCGTAGTAGGCAATGGC CTGCTCGAACAGCTTGTTCTCCTCTTTGCTCCACTCTGACGCCATGTTGCTGTTGCGGGA CGAGCTACGTGACCCAGCAGAAGACATCCTGCAGCTTGGATTTGATTAAACTAGCTAGCT ACTGTCTTCTTTGGAAGTTGAACGCTAAGTAACTTGCTAACTAGTGTGCAGCTAGACTGA AGTTTTTTTTGGACTTCAGAAGAGATCTATCGATCTCTGCTGTGT



consensusID : consensus_8372#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 661
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTCTAGCAGGCACAACTTTATAATCACTAGCACACAAGTACAGAAGTCTTACATCACTGATGTTTACTACATAATTTAGCTGGAAGGTTTAACAACCACACACAATGCCAAAGGCAGGCTAGTTTCTGCAAAATCGACACTGATTTGCTTTACAACCTAAAGTATGTACAAACAAGGCTTTTCTTCTTTTATTTATAACCAAGCGACCACAATCTTTTTAGGCAATAACAATATCAATATACTTCCTTGATTCCTTCAGTAACTTAGCCACAGCTAGCAGGGAATATAATTTATATGGGAATTTTTTTCCTGTTGTCGGGAACCTCAAATGCTTCCACCCCTATCAGTTCCATGCTCCCTGGGTATTGTACTTGGGGAACGGGACTCTTCTTGCCTCTATCAGCTTGAGGTCGCCCTCGAGGATCTCATAGGGGCGGCACACCTCATCGGCTGTCTTGGTGCCTCCCATGGCGCGAGACACCTTGTGAAAGAGGTCAGGCGCACCCTCGCCGTATTAGGCAAGAGCCTCCTCGAACAGCTTGTTCTCCTTTTTGCTCACTCTGAGCCCATGTTGACACTGTTGCTGTTGCGGGAGGAGCTGTTTGACCTAGAAAAATCCTTGGATTGGACTACGGCTTTTC]

[+] EMBL CA760148             [TTTTTTTTTTTTTTTTTTTTTTCTAGCAGGCACAACTTTATAATCACTAGCACACAAGTACAGAAGTCTTACATCACTGATGTTTACTACATAATTTAGCTGGAAGGTTTAACAACCACACACAATGCCAAAGGCAGGCTAGTTTCTGCAAAATCGACACTGATTTGCTTTACAACCTAAAGTATGTACAAACAAGGCTTTTCTTCTTTTATTTATAACCAAGCGACCACAATCTTTTTAGGCAATAACAATATCAATATACTTCCTTGATTCCTTCAGTAACTTAGCCACAGCTAGCAGGGAATATAATTTATATGGGAATTTTTTTCCTGTTGTCGGGAACCTCAAATGCTTCCACCCCTATCAGTTCCATGCTCCCTGGGTATTGTACTTGGGGAACGGGACTCTTCTTGCCTCTATCAGCTTGAGGTCGCCCTCGAGGATCTCATAGGGGCGGCACACCTCATCGGCTGTCTTGGTGCCTCCCATGGCGCGAGACACCTTGTGAAAGAGGTCAGGCGCACCCTCGCCGTATTAGGCAAGAGCCTCCTCGAACAGCTTGTTCTCCTTTTTGCTCACTCTGAGCCCATGTTGACACTGTTGCTGTTGCGGGAGGAGCTGTTTGACCTAGAAAAATCCTTGGATTGGACTACGGCTTTTC]


>consensus_8372#1 TTTTTTTTTTTTTTTTTTTTTTCTAGCAGGCACAACTTTATAATCACTAGCACACAAGTA CAGAAGTCTTACATCACTGATGTTTACTACATAATTTAGCTGGAAGGTTTAACAACCACA CACAATGCCAAAGGCAGGCTAGTTTCTGCAAAATCGACACTGATTTGCTTTACAACCTAA AGTATGTACAAACAAGGCTTTTCTTCTTTTATTTATAACCAAGCGACCACAATCTTTTTA GGCAATAACAATATCAATATACTTCCTTGATTCCTTCAGTAACTTAGCCACAGCTAGCAG GGAATATAATTTATATGGGAATTTTTTTCCTGTTGTCGGGAACCTCAAATGCTTCCACCC CTATCAGTTCCATGCTCCCTGGGTATTGTACTTGGGGAACGGGACTCTTCTTGCCTCTAT CAGCTTGAGGTCGCCCTCGAGGATCTCATAGGGGCGGCACACCTCATCGGCTGTCTTGGT GCCTCCCATGGCGCGAGACACCTTGTGAAAGAGGTCAGGCGCACCCTCGCCGTATTAGGC AAGAGCCTCCTCGAACAGCTTGTTCTCCTTTTTGCTCACTCTGAGCCCATGTTGACACTG TTGCTGTTGCGGGAGGAGCTGTTTGACCTAGAAAAATCCTTGGATTGGACTACGGCTTTT C



consensusID : consensus_8372#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence
                              [TTTTTGAAACCAATTGGTCGATTGAGCATGTGAGATTCTAGTAACCACAACTTTATAATCACTAGCACGCGAGTACAGAAGTCTTACATCACTGATGTTTACTACATATATAGTATAGCTGGAATGTTCAAAACCACACACAATGCCAAATGCAGGCTAGTTTTTTTGCAAGATCAACACTGATTTGCTTTACAACCTAAAAGTATATACAGACAATCCCTTTCTTCTTTTATTTATAACCAAGCAATCGACCACAATCTTCTTAACACAGTAACAATATATCAATATGCTTTCCTTCAACAACTAGCCACAGGAAGGAATATAGTTTATATTGGAGTTATTTCCTTGCTGGAACCTCAGATGCTTCCACCCCTCAGTCGGTCAGTTCCATGCTCCCTGTGTATTGTACTTGGGGAACGGGACTCGCCTTGCCTCAATCAGC]

[+] EMBL CF292780             [TTTTTGAAACCAATTGGTCGATTGAGCATGTGAGATTCTAGTAACCACAACTTTATAATCACTAGCACGCGAGTACAGAAGTCTTACATCACTGATGTTTACTACATATATAGTATAGCTGGAATGTTCAAAACCACACACAATGCCAAATGCAGGCTAGTTTTTTTGCAAGATCAACACTGATTTGCTTTACAACCTAAAAGTATATACAGACAATCCCTTTCTTCTTTTATTTATAACCAAGCAATCGACCACAATCTTCTTAACACAGTAACAATATATCAATATGCTTTCCTTCAACAACTAGCCACAGGAAGGAATATAGTTTATATTGGAGTTATTTCCTTGCTGGAACCTCAGATGCTTCCACCCCTCAGTCGGTCAGTTCCATGCTCCCTGTGTATTGTACTTGGGGAACGGGACTCGCCTTGCCTCAATCAGC]


>consensus_8372#2 TTTTTGAAACCAATTGGTCGATTGAGCATGTGAGATTCTAGTAACCACAACTTTATAATC ACTAGCACGCGAGTACAGAAGTCTTACATCACTGATGTTTACTACATATATAGTATAGCT GGAATGTTCAAAACCACACACAATGCCAAATGCAGGCTAGTTTTTTTGCAAGATCAACAC TGATTTGCTTTACAACCTAAAAGTATATACAGACAATCCCTTTCTTCTTTTATTTATAAC CAAGCAATCGACCACAATCTTCTTAACACAGTAACAATATATCAATATGCTTTCCTTCAA CAACTAGCCACAGGAAGGAATATAGTTTATATTGGAGTTATTTCCTTGCTGGAACCTCAG ATGCTTCCACCCCTCAGTCGGTCAGTTCCATGCTCCCTGTGTATTGTACTTGGGGAACGG GACTCGCCTTGCCTCAATCAGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8372#0      ------------------------TTTTTTTTTTTTTCCAGTAACCACAACTTTATAATC 36
consensus_8372#2      TTTTTGAAACCAATTGGTCGATTGAGCATGTGAGATTCTAGTAACCACAACTTTATAATC 60
consensus_8372#1      ---------------TTTTTTTTTTTTTTTTTTTTTTCTAGCAGGCACAACTTTATAATC 45
                                                  * *    *** ** *  ***************

consensus_8372#0      ACTAGCACGCGAGTACAGAAGTCTTACATCACTGATGTTTACTACATATATAGTATAGCT 96
consensus_8372#2      ACTAGCACGCGAGTACAGAAGTCTTACATCACTGATGTTTACTACATATATAGTATAGCT 120
consensus_8372#1      ACTAGCACACAAGTACAGAAGTCTTACATCACTGATGTTTACTACA----TAATTTAGCT 101
                      ******** * ***********************************    ** * *****

consensus_8372#0      GGAATGTTCAA-AACCACACACAATGCCAAATGCAGGCTAGTTTTTTTGCAAGATCAACA 155
consensus_8372#2      GGAATGTTCAA-AACCACACACAATGCCAAATGCAGGCTAGTTTTTTTGCAAGATCAACA 179
consensus_8372#1      GGAAGGTTTAACAACCACACACAATGCCAAAGGCAGGCTAGTTTCT--GCAAAATCGACA 159
                      **** *** ** ******************* ************ *  **** *** ***

consensus_8372#0      CTGATTTGCTTTACAACCTAAAAGTATACACAGACAATCCCTTTCTTCTTTTATTTATAA 215
consensus_8372#2      CTGATTTGCTTTACAACCTAAAAGTATATACAGACAATCCCTTTCTTCTTTTATTTATAA 239
consensus_8372#1      CTGATTTGCTTTACAACCTAAA-GTATGTACAAACAAGGCTTTTCTTCTTTTATTTATAA 218
                      ********************** ****  *** ****  * *******************

consensus_8372#0      CCAAGCAATCGACCACAATCTTCTTAACACAGTAACAATATATCAATATGCTT------- 268
consensus_8372#2      CCAAGCAATCGACCACAATCTTCTTAACACAGTAACAATATATCAATATGCTT------- 292
consensus_8372#1      CCAAGC----GACCACAATCTTTTTAG-GCAATAACAATAT--CAATATACTTCCTTGAT 271
                      ******    ************ ***   ** *********  ****** ***       

consensus_8372#0      TCCTTCAACAACT-AGCCACAGG----AAGGAATATAGTTTATATTGGAGTTATTTCCTT 323
consensus_8372#2      TCCTTCAACAACT-AGCCACAGG----AAGGAATATAGTTTATATTGGAGTTATTTCCTT 347
consensus_8372#1      TCCTTCAGTAACTTAGCCACAGCTAGCAGGGAATATAATTTATATGGGAATTTTTTTCCT 331
                      *******  **** ********     * ******** ******* *** ** *** * *

consensus_8372#0      GCTG----GAACCTCAGATGCTTCCACCCCTCAGTCGGTCAGTTCCATGCTCCCTGTGTA 379
consensus_8372#2      GCTG----GAACCTCAGATGCTTCCACCCCTCAGTCGGTCAGTTCCATGCTCCCTGTGTA 403
consensus_8372#1      GTTGTCGGGAACCTCAAATGCTTCCACCCCT------ATCAGTTCCATGCTCCCTGGGTA 385
                      * **    ******** **************       ****************** ***

consensus_8372#0      TTGTACTTGGGGAACGGGACTCGCCTTGCCTCAATCAGCTTGATATCGTCCACGAGGATC 439
consensus_8372#2      TTGTACTTGGGGAACGGGACTCGCCTTGCCTCAATCAGC--------------------- 442
consensus_8372#1      TTGTACTTGGGGAACGGGACTCTTCTTGCCTCTATCAGCTTGAGGTCGCCCTCGAGGATC 445
                      **********************  ******** ******                     

consensus_8372#0      TCGAAGTGGAGGCGCACCTCGTCGGCTGTCTTGGTGCCCCTCATGGCGCGGGACACCTTG 499
consensus_8372#2      ------------------------------------------------------------
consensus_8372#1      TCATAGGGGCGGCACACCTCATCGGCTGTCTTGGTGCCTCCCATGGCGCGAGACACCTTG 505
                                                                                  

consensus_8372#0      TGCCAGAGATCAGGCGCGCCCTCGCCGTAGTAGGCAATGGCCTGCTCGAACAGCTTGTTC 559
consensus_8372#2      ------------------------------------------------------------
consensus_8372#1      TGAAAGAGGTCAGGCGCACCCTCGCCGTATTAGGCAAGAGCCTCCTCGAACAGCTTGTTC 565
                                                                                  

consensus_8372#0      TCCTCTTTGCTCCACTCTGACGCCATGTTGCTGTTGCGGGACGAGCTACGTGACCCAGCA 619
consensus_8372#2      ------------------------------------------------------------
consensus_8372#1      TCCTTTTTGCTC-ACTCTGAGCCCATGTTGACACTGTTGCTGTTGCGGGAGGAGCT-GTT 623
                                                                                  

consensus_8372#0      GAAGACATCCTGCAGCTTGGATTTGATTAAACTAGCTAGCTACTGTCTTCTTTGGAAGTT 679
consensus_8372#2      ------------------------------------------------------------
consensus_8372#1      TGACCTAGAAAAATCCTTGGATTGGACTACGGCTTTTC---------------------- 661
                                                                                  

consensus_8372#0      GAACGCTAAGTAACTTGCTAACTAGTGTGCAGCTAGACTGAAGTTTTTTTTGGACTTCAG 739
consensus_8372#2      ------------------------------------------------------------
consensus_8372#1      ------------------------------------------------------------
                                                                                  

consensus_8372#0      AAGAGATCTATCGATCTCTGCTGTGT 765
consensus_8372#2      --------------------------
consensus_8372#1      --------------------------
                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)