|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8374#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 983 fasta sequence
[GCCACCCTTCCTACTTTGCCCCCACCACCGAGCCTCCCTGAGCAGTGAAACCGCGGCGCGCGGCGGGCGTCGGCGTCGGCGTCGGCGGCGGCGGCGAGGGCGTAGAGATCGCGCGCGCGCGCGCGCGGAGGCGTAGCCGCGGAGTCGCTCTCTCCTCGTCCTGCCTCGCGACTCGGCTCCGCGAAGCTTCGAGGAGGAGGAGGAGGAGGAGGAGTACGACGGGGTGGGAGCGGCGGTGGGTGGGATGGGGAGGGACGAGATGCTGCGGCGGAGCCTGGTGGCGCTAGCGGCGGCGGTGGTGGTGACGGGGGTGGTGACGGCGTCGGTGCGGAAGGCGGCGGCGACGTACGGGTTCGGAATCCTGGCCATCGCGGGCGTGCTGCTCCCCGACTGGGAGTTCTTCGACCGCGACTACTCCCAGTGGCTCACCCCGATGCCGGCCTCCCGCCGCACGGCCGCCGAAGCCGCCGCGGATCGCGAGCACGACGTCTGGAAATTTAAGCCCTATCCCCTAAGGATGGCTATGCTTAC-GACAATCTATGGGTTTGGCCTTTACAAGTGGTGGATGTACGTATCTAGCTAGTGGAATCCACCTTCCTCT-CCGC-CTTTGCTCTCATGTATGGATTAGAAGTTTTTGGGAGAGTACCATCATCACATTGCCATTCTTGGCCATTTATATTGCCTGATTTTATTATACACTGCCAATACGAAACGTCTAATGGGGA-TTGGGGAACA-GTCCCCATCACAGGTTGATGTCTGTAACTAATGGAGGTTTGTAATGGGCAAATGCCACTCTCAGCTC-AGC-TCAGCTCAATATTCCTA-GCCCTATTTTCTTCTTCGTTTTTCTCCTCTCCTCCCCTTGATCTCAGTAGCGCGTCTTGTTTTGATACAGAGAGCACTATGAAAATGTTCTTTGCACAGAATGAATGGTTTATCTGATACAGTAGTCTCATGTTTTATCAGACACTCTTGTTATTCACCAG]
[+] EMBL AK059960 [GCCACCCTTCCTACTTTGCCCCCACCACCGAGCCTCCCTGAGCAGTGAAACCGCGGCGCGCGGCGGGCGTCGGCGTCGGCGTCGGCGGCGGCGGCGAGGGCGTAGAGATCGCGCGCGCGCGCGCGCGGAGGCGTAGCCGCGGAGTCGCTCTCTCCTCGTCCTGCCTCGCGACTCGGCTCCGCGAAGCTTCGAGGAGGAGGAGGAGGAGGAGGAGTACGACGGGGTGGGAGCGGCGGTGGGTGGGATGGGGAGGGACGAGATGCTGCGGCGGAGCCTGGTGGCGCTAGCGGCGGCGGTGGTGGTGACGGGGGTGGTGACGGCGTCGGTGCGGAAGGCGGCGGCGACGTACGGGTTCGGAATCCTGGCCATCGCGGGCGTGCTGCTCCCCGACTGGGAGTTCTTCGACCGCGACTACTCCCAGTGGCTCACCCCGATGCCGGCCTCCCGCCGCACGGCCGCCGAAGCCGCCGCGGATCGCGAGCACGACGTCTGGAAATTTAAGCCCTATCCCCTAAGGATGGCTATGCTTAC GACAATCTATGGGTTTGGCCTTTACAAGTGGTGGATGTACGTATCTAGCTAGTGGAATCCACCTTCCTCT CCGC CTTTGCTCTCATGTATGGATTAGAAGTTTTTGGGAGAGTACCATCATCACATTGCCATTCTTGGCCATTTATATTGCCTGATTTTATTATACACTGCCAATACGAAACGTCTAATGGGGA TTGGGGAACA GTCCCCATCACAGGTTGATGTCTGTAACTAATGGAGGTTTGTAATGGGCAAATGCCACTCTCAGCTC AGC TCAGCTCAATATTCCTA GCCCTATTTTCTTCTTCGTTTTTCTCCTCTCCTCCCCTTGATCTCAGTAGCGCGTCTTGTTTTGATACAGAGAGCACTATGAAAATGTTCTTTGCACAGAATGAATGGTTTATCTGATACAGTAGTCTCATGTTTTATCAGACACTCTTGTTATTCACCAG]
[+] EMBL BM037809 [ TCACCCCGATGCCGGCCTCCCGCCGCGCGGCCGCCGAAGCCGCCGCGGATCGCGAGCACGACGTCTGGANATTTAAGCCCTATCCCCTAAGGATGGCTATGCTTACGGACCATCTATGGGTTTGGCCTTTACAAGTGGTGGATGTACGTATCTAGCTAGTGGAATCCACCTTCCTCTNCCGCGCTTTGCTCTCATGTATGGATTAGAAGTTTTTGGGAGAGTACCATCATCAC TTGCCATTCTTGGCCATTTATATTGCCTGATTTTATTATAC CTGCC ATACGAAACGTCTAATGGGGACTTGGGGAACACGTCCCCATCACAGGTTGATGTCTGTAACTAATGGAGGTTTGTAATGGGC AATGCCACTCTCAGCTC AGC TCAGCTCAATATTCCTA GCCCTATTTTCTTCTTCGTTTTTCTCCTCTCCTCCCCTTGATCTCAGTAGCGCGTCTTGTTTTGATACAGAGAGCACTATGAAAATGTTCTTTGCACAGAATGAATGGTTTAaaaaaaaa ]
[+] EMBL AU033259 [ CCCCTAAGGATGGCTATGCTTAC GACAATCTATGGGTTTGGCCTTTACAAGTGGTGGATGTACGTATCTAGCTAGTGGAATCCACCTTCCTCT CCGC CTTTGCTCTCATGTATGGATTAGAAGTTTTTGGGAGAGTACCATCATCACATTGCCATTCTTGGCCATTTATATTGNCTGATTTTATTATACACTGCCAATACGAAACGTCTAATNGGGA TTGGGGAACA GTCCCCATCACAGGTTGATGTCTGTAACTAATTGAGGGTTNTAATGGGCAAATGCCACTCTCAGCTCAAGCTTCAGCTTAATATTCCTAGGCCCTATTTTCTTtc ]
[+] EMBL CF196766 [ TCTATGGGTTTGGCCTTTACAAGTGGTGGATGTACGTATCTAGCTAGTGGAATCCACCTTCCTCT CCGC CTTTGCTCTCATGTATGGATTAGAAGTTTTTGGGAGAGTACCATCATCACATTGCCATTCTTGGCCATTTATATTGCCTGATTTTATTATACACTGCCAATACGAAACGTCTAATGGGGA TTGGGGAACA GTCCCCATCACAGGTTGATGTCTGTAACTAATGGAGGTTTGTAATGGGCAAATGCCACTCTCAGCTC AGC TCAGCTCAATATTCCTA GCCCTATTTTCTTCTTCGTTTTTCTCCTCTCCTNNNNNNGATCTCAGTAGCGCGTCTTGNNTTGATACAGAGAGCACTATGANAATGTTCTNNGCACNNNNNGAATNNNNTATCTGATACA ]
consensusID : consensus_8374#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence
[CGAAGCCCTANCCCCTAAGGATGGCTATGCTTACGACAATCTATGGGTTTGGCCTTTACAAGTGGTGGATGTACGTATCTAGCTAGTGGAATCCACCTTCCTCTCCGCCTTTGCTCTCATGTNTGGATTAGAAGTTTTTGGGAGAGTNCCATCATCACATTGCCATTCTTGGCCATTTATATTGCCTGATTTTATTATACACTGCCAATACGAAACGTCTAATGGGGATTGGGGAACAGTCCCCATCACAGGTTGATGTCTGTAACTAATGGAGGTTTGTAATGGGCAAATGCCACTCTCAGCTCAGCTCAGCTCAATNTTCCTAGCCCTATTTTNTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAA]
[+] EMBL AU033260 [CGAAGCCCTANCCCCTAAGGATGGCTATGCTTACGACAATCTATGGGTTTGGCCTTTACAAGTGGTGGATGTACGTATCTAGCTAGTGGAATCCACCTTCCTCTCCGCCTTTGCTCTCATGTNTGGATTAGAAGTTTTTGGGAGAGTNCCATCATCACATTGCCATTCTTGGCCATTTATATTGCCTGATTTTATTATACACTGCCAATACGAAACGTCTAATGGGGATTGGGGAACAGTCCCCATCACAGGTTGATGTCTGTAACTAATGGAGGTTTGTAATGGGCAAATGCCACTCTCAGCTCAGCTCAGCTCAATNTTCCTAGCCCTATTTTNTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8374#0 GCCACCCTTCCTACTTTGCCCCCACCACCGAGCCTCCCTGAGCAGTGAAACCGCGGCGCG 60
consensus_8374#1 ------------------------------------------------------------
consensus_8374#0 CGGCGGGCGTCGGCGTCGGCGTCGGCGGCGGCGGCGAGGGCGTAGAGATCGCGCGCGCGC 120
consensus_8374#1 ------------------------------------------------------------
consensus_8374#0 GCGCGCGGAGGCGTAGCCGCGGAGTCGCTCTCTCCTCGTCCTGCCTCGCGACTCGGCTCC 180
consensus_8374#1 ------------------------------------------------------------
consensus_8374#0 GCGAAGCTTCGAGGAGGAGGAGGAGGAGGAGGAGTACGACGGGGTGGGAGCGGCGGTGGG 240
consensus_8374#1 ------------------------------------------------------------
consensus_8374#0 TGGGATGGGGAGGGACGAGATGCTGCGGCGGAGCCTGGTGGCGCTAGCGGCGGCGGTGGT 300
consensus_8374#1 ------------------------------------------------------------
consensus_8374#0 GGTGACGGGGGTGGTGACGGCGTCGGTGCGGAAGGCGGCGGCGACGTACGGGTTCGGAAT 360
consensus_8374#1 ------------------------------------------------------------
consensus_8374#0 CCTGGCCATCGCGGGCGTGCTGCTCCCCGACTGGGAGTTCTTCGACCGCGACTACTCCCA 420
consensus_8374#1 ------------------------------------------------------------
consensus_8374#0 GTGGCTCACCCCGATGCCGGCCTCCCGCCGCACGGCCGCCGAAGCCGCCGCGGATCGCGA 480
consensus_8374#1 ------------------------------------------------------------
consensus_8374#0 GCACGACGTCTGGAAATTTAAGCCCTATCCCCTAAGGATGGCTATGCTTACGACAATCTA 540
consensus_8374#1 -----------------CGAAGCCCTANCCCCTAAGGATGGCTATGCTTACGACAATCTA 43
******** ********************************
consensus_8374#0 TGGGTTTGGCCTTTACAAGTGGTGGATGTACGTATCTAGCTAGTGGAATCCACCTTCCTC 600
consensus_8374#1 TGGGTTTGGCCTTTACAAGTGGTGGATGTACGTATCTAGCTAGTGGAATCCACCTTCCTC 103
************************************************************
consensus_8374#0 TCCGCCTTTGCTCTCATGTATGGATTAGAAGTTTTTGGGAGAGTACCATCATCACATTGC 660
consensus_8374#1 TCCGCCTTTGCTCTCATGTNTGGATTAGAAGTTTTTGGGAGAGTNCCATCATCACATTGC 163
******************* ************************ ***************
consensus_8374#0 CATTCTTGGCCATTTATATTGCCTGATTTTATTATACACTGCCAATACGAAACGTCTAAT 720
consensus_8374#1 CATTCTTGGCCATTTATATTGCCTGATTTTATTATACACTGCCAATACGAAACGTCTAAT 223
************************************************************
consensus_8374#0 GGGGATTGGGGAACAGTCCCCATCACAGGTTGATGTCTGTAACTAATGGAGGTTTGTAAT 780
consensus_8374#1 GGGGATTGGGGAACAGTCCCCATCACAGGTTGATGTCTGTAACTAATGGAGGTTTGTAAT 283
************************************************************
consensus_8374#0 GGGCAAATGCCACTCTCAGCTCAGCTCAGCTCAATATTCCTAGCCCTATTTTCTTCTTCG 840
consensus_8374#1 GGGCAAATGCCACTCTCAGCTCAGCTCAGCTCAATNTTCCTAGCCCTATTTTNTTCAAA- 342
*********************************** **************** ***
consensus_8374#0 TTTTTCTCCTCTCCTCCCCTTGATCTCAGTAGCGCGTCTTGTTTTGATACAGAGAGCACT 900
consensus_8374#1 ---------------------------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANA 375
* * * * * * * *
consensus_8374#0 ATGAAAATGTTCTTTGCACAGAATGAATGGTTTATCTGATACAGTAGTCTCATGTTTTAT 960
consensus_8374#1 AAAAAAA----------------------------------------------------- 382
* ****
consensus_8374#0 CAGACACTCTTGTTATTCACCAG 983
consensus_8374#1 -----------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||