These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8375#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1220 fasta sequence [TACTTCTCCACTCACTCCCCTCTCTCTCTCACATCGGTGGGCGAGCGGGGTGCTGCCTCACCGCGAGCACCGGCGGCACTTCCCAAACCATGACAGCAACGACGGCGCCCTCCCCACCGTGAGCAGCGGCAGCGACGGCGCCCTCTCCACCCTCAAGATCACCACGAGCGGCAGCGGTGGCGGCGACGCCCTCCCCCACCACGAGCGGCAGCGATGACGGCGTCAATGGCTTCCCCTGGTGGATCCGATGGCGACGCCACGTCGGCGGCTTCCCACAACGAGATTGGATTTTTTTTTTCATGAGATTGGATTGGATTTATTGGAGAGGAGTTTAGGATTTGTCTCGTGTGTCTTGAGATTGGATTTGGGGGGATTTTACGATTTTTCCGTGTGTGTTTGGGGAATCAGACTCGGATTGAACGCAACACAGCGATCTGGGAGGGTTTTTTTTCGCGTCATTAAATCGGACTATCCTTTTTCTTTTCTTTTTATATATGTTTTTTCGCCCTTTTATTTTGTATAAATTTTGTGTGTATAAAACTTCAGTTTTTAAAGAAACACGTAGTCCCCCGTCCAAAAAACTCAACCTAATATTGGATTAGACGTATATTGGATTAGAAAGGACAACAAATTTAGGCATACTAGAAAACGTAATATCTAATACTAAATTGGTTTTAAATAGAATATGAGGAAAGGTTGGGTCGTTGGTTCACATGGTTTATTTTTTCTATCTATATTATCTTATGCATACATTGGGATTATCAGTAGTTTCTCATTCTGTAATGAATTTCAGTTTTGAAAACTACATACCAATTTAAAATGGAAGATGGTTCACCTCTCATTACGACGGGTGATATAAGAGCAAGTTTAATAGTATAGCTCACTACTAGCTCCAAATCATCTATAGCTAAATTTATACAATAGTTGTTTACTATACTATTAATACTTAGTCCCACCTATCATACACACATTATGTCTTAAAGTCCGTGCTGTAGCTGGCTACAGATCTGTAGTCCACTGTTCTTCTCTTTTCCTTTATCTCTTTAAAATATGTTTATAGCTGGCTTATAGCCTACTATTGTATCTGCTCTAAGGCTATCTTTGCTGGTTCACTAGAAAATCAGTTGTCAGTACAGTCAGTAATGTGCACATGGCGATTGGATTGGTGGATGACATGTACGCGGGTATGCTGTTTTTACCACACATAAATTTGCAAACAA] [+] EMBL AK120463 [TACTTCTCCACTCACTCCCCTCTCTCTCTCACATCGGTGGGCGAGCGGGGTGCTGCCTCACCGCGAGCACCGGCGGCACTTCCCAAACCATGACAGCAACGACGGCGCCCTCCCCACCGTGAGCAGCGGCAGCGACGGCGCCCTCTCCACCCTCAAGATCACCACGAGCGGCAGCGGTGGCGGCGACGCCCTCCCCCACCACGAGCGGCAGCGATGACGGCGTCAATGGCTTCCCCTGGTGGATCCGATGGCGACGCCACGTCGGCGGCTTCCCACAACGAGATTGGATTTTTTTTTTCATGAGATTGGATTGGATTTATTGGAGAGGAGTTTAGGATTTGTCTCGTGTGTCTTGAGATTGGATTTGGGGGGATTTTACGATTTTTCCGTGTGTGTTTGGGGAATCAGACTCGGATTGAACGCAACACAGCGATCTGGGAGGGTTTTTTTTCGCGTCATTAAATCGGACTATCCTTTTTC ] [+] EMBL AK071612 [ ACTCACTCCCCTCTCTCTCTCACATCGGTGGGCGAGCGGGGTGCTGCCTCACCGCGAGCACCGGCGGCACTTCCCAAACCATGACAGCAACGACGGCGCCCTCCCCACCGTGAGCAGCGGCAGCGACGGCGCCCTCTCCACCCTCAAGATCACCACGAGCGGCAGCGGTGGCGGCGACGCCCTCCCCCACCACGAGCGGCAGCGATGACGGCGTCAATGGCTTCCCCTGGTGGATCCGATGGCGACGCCACGTCGGCGGCTTCCCACAACGAGATTGGATTTTTTTTTTCATGAGATTGGATTGGATTTATTGGAGAGGAGTTTAGGATTTGTCTCGTGTGTCTTGAGATTGGATTTGGGGGGATTTTACGATTTTTCCGTGTGTGTTTGGGGAATCAGACTCGGATTGAACGCAACACAGCGATCTGGGAGGGTTTTTTTTCGCGTCATTAAATCGGACTATCCTTTTTCTTTTCTTTTTATATATGTTTTTTCGCCCTTTTATTTTGTATAAATTTTGTGTGTATAAAACTTCAGTTTTTAAAGAAACACGTAGTCCCCCGTCCAAAAAACTCAACCTAATATTGGATTAGACGTATATTGGATTAGAAAGGACAACAAATTTAGGCATACTAGAAAACGTAATATCTAATACTAAATTGGTTTTAAATAGAATATGAGGAAAGGTTGGGTCGTTGGTTCACATGGTTTATTTTTTCTATCTATATTATCTTATGCATACATTGGGATTATCAGTAGTTTCTCATTCTGTAATGAATTTCAGTTTTGAAAACTACATACCAATTTAAAATGGAAGATGGTTCACCTCTCATTACGACGGGTGATATAAGAGCAAGTTTAATAGTATAGCTCACTACTAGCTCCAAATCATCTATAGCTAAATTTATACAATAGTTGTTTACTATACTATTAATACTTAGTCCCACCTATCATACACACATTATGTCTTAAAGTCCGTGCTGTAGCTGGCTACAGATCTGTAGTCCACTGTTCTTCTCTTTTCCTTTATCTCTTTAAAATATGTTTATAGCTGGCTTATAGCCTACTATTGTATCTGCTCTAAGGCTATCTTTGCTGGTTCACTAGAAAATCAGTTGTCAGTACAGTCAGTAATGTGCACATGGCGATTGGATTGGTGGATGACATGTACGCGGGTATGCTGTTTTTACCACACATAAATTTGCAAACAA] [+] EMBL CB644352 [ ATCGGCGGGCGAGCGGGGTGCTGCCTCACCGCGAGCACCGGCGGCACTTCCCAAACCATGACAGCAACGACGGCGCCCTCCCCACCGTGAGCAGCGGCAGCGACGGCGCCCTCTCCACCCTCAAGATCACCACGAGCGGCAGCGGTGGCGGCGACGCCCTCCCCCACCACGAGCGGCAGCGATGACGGCGTCAATGGCTTCCCCTGGTGGATCCGATGGCGACGCCACGTCGGCGGCTTCCCACAACGAGATTGGATTTTTTTTTTCATGAGATTGGATTGGATTTATTGGAGAGGAGTTTAGGATTTGTCTCGTGTGTCTTGAGATTGGATTTGGGGGGATTTTACGATTTTTCCGTGTGTGTTTGGGGAATCAGACTCGGATTGAACGCAACACAGCGATCTGGGAGGGTTTTTTTTCGCGTCATTAAATCGGACTATCCTTTTTCTTTTCTTTTTATATATGTTTTTTCGCCCTTTTATTTTGTATAAATTTTGTGTGTATAAAACTTCAGTTTTTAAAGAAACACGTAG ] consensusID : consensus_8375#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 652 fasta sequence [TTCTGTCTCGTGGCTCTCTCCGTCTCCCCGTCTCTACTTCTCCACTCACTCCCCAGCGACGGCGGCGTCGCTTCTCTCTCTCACATCGGTGGGCGAGCGGGGTGCTGCCTCACCGCGAGCACCGGCGGCACTTCCCAAACCATGACAACAACGACGGCGCCCTCCCCACCGTGAGCAGCGGCAGCGACGGCGCCCTCTCCACCCTCAAGATCACCACGAGCGGCAGCGGTGGCGGCGACGCCCTCCCCCACCACGAGCGGCAGCGATGACGGCGTCAATGGCTTCCCCTGGTGGATCCGATGGCGACGCCACGTCGGCGGCTTCACGCAACAGAT-CTGTCGGTGTCGACGGCTTCCCACAACGAGATTGGATTTTTTTTTTCATGGGATTTCAGTATTTTGTTTTTTGAGATTGGATTGGATTTATTGGAGAGGAGTTTAGGATTTGTCCCGTGTGTCTTGAGATTGGATTTGGGGGGATTTTACGATTTTTCCGTGTGTGTTTGGGGAATCAGACTCGGATTGAACGCAACACAGCGATCTGGGAGGGTTTTTTTCGCGTCATTGAATCGGACTATCCTTTTTCTTTTCTTTTTATATGGTTTTTCGCCCTTTTATTTTGNATAAAATTTGGGNGTATAAAGCTTCAGTTT] [+] EMBL CA765378 [TTCTGTCTCGTGGCTCTCTCCGTCTCCCCGTCTCTACTTCTCCACTCACTCCCCAGCGACGGCGGCGTCGCTTCTCTCTCTCACATCGGTGGGCGAGCGGGGTGCTGCCTCACCGCGAGCACCGGCGGCACTTCCCAAACCATGACAACAACGACGGCGCCCTCCCCACCGTGAGCAGCGGCAGCGACGGCGCCCTCTCCACCCTCAAGATCACCACGAGCGGCAGCGGTGGCGGCGACGCCCTCCCCCACCACGAGCGGCAGCGATGACGGCGTCAATGGCTTCCCCTGGTGGATCCGATGGCGACGCCACGTCGGCGGCTTCACGCAACAGAT CTGTCGGTGTCGACGGCTTCCCACAACGAGATTGGATTTTTTTTTTCATGGGATTTCAGTATTTTGTTTTTTGAGATTGGATTGGATTTATTGGAGAGGAGTTTAGGATTTGTCCCGTGTGTCTTGAGATTGGATTTGGGGGGATTTTACGATTTTTCCGTGTGTGTTTGGGGAATCAGACTCGGATTGAACGCAACACAGCGATCTGGGAGGGTTTTTTTCGCGTCATTGAATCGGACTATCCTTTTTCTTTTCTTTTTATATGGTTTTTCGCCCTTTTATTTTGNATAAAATTTGGGNGTATAAAGCTTCAGTTT] [+] EMBL BI804330 [ TGGCTCTCTCCGTCTCCCCGTCTCTACTTCTCCACTCACTCCCCAGCGACGGCGGCGTCGCTTCTCTCTCTCACATCGGTGGGCGAGCGGGGT CTGCCTCACCGCGAGCACCGGCGGCACTTCCC AACCATGACAACAACGACGGCGCCCTCCCCACCGTGAGCAGCGGCAGCGACGGCGCCCTCTCCACCCTCAAGATCACCACGAGCGGCAGCGGTGGCGGCGACGCCCTCCCCCACCACGAGCGGCAGCGATGACGGCGTCAATGGCTTCCCCTGGTGGATCCGATGGCGACGCCACGTCGGCGGCTTCACGCAACAGATCCTGTCGGTGTCGACGGCTTCCCCCAACGAGATTGGATTTTTTTTTTCATGGGATTTCAGTATTTTGTTTTTTGAGATTGGATTGGATTTATTGGAGAGGAGTTTAGGATTTGTCTCGTGTGTCTTGAGATTGGATTTGGGGGGATTTTACGATTTTTCCGTGTGTGTTTGGGGAATCAGACTCGGATTGAACGCAAaa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8375#0 ----------------------------------TACTTCTCCACTCACTCCCC------ 20 consensus_8375#1 TTCTGTCTCGTGGCTCTCTCCGTCTCCCCGTCTCTACTTCTCCACTCACTCCCCAGCGAC 60 ******************** consensus_8375#0 ------------TCTCTCTCTCACATCGGTGGGCGAGCGGGGTGCTGCCTCACCGCGAGC 68 consensus_8375#1 GGCGGCGTCGCTTCTCTCTCTCACATCGGTGGGCGAGCGGGGTGCTGCCTCACCGCGAGC 120 ************************************************ consensus_8375#0 ACCGGCGGCACTTCCCAAACCATGACAGCAACGACGGCGCCCTCCCCACCGTGAGCAGCG 128 consensus_8375#1 ACCGGCGGCACTTCCCAAACCATGACAACAACGACGGCGCCCTCCCCACCGTGAGCAGCG 180 *************************** ******************************** consensus_8375#0 GCAGCGACGGCGCCCTCTCCACCCTCAAGATCACCACGAGCGGCAGCGGTGGCGGCGACG 188 consensus_8375#1 GCAGCGACGGCGCCCTCTCCACCCTCAAGATCACCACGAGCGGCAGCGGTGGCGGCGACG 240 ************************************************************ consensus_8375#0 CCCTCCCCCACCACGAGCGGCAGCGATGACGGCGTCAATGGCTTCCCCTGGTGGATCCGA 248 consensus_8375#1 CCCTCCCCCACCACGAGCGGCAGCGATGACGGCGTCAATGGCTTCCCCTGGTGGATCCGA 300 ************************************************************ consensus_8375#0 TGGCGACGCCACGTCGGCGGCTTC-------------------------------CCACA 277 consensus_8375#1 TGGCGACGCCACGTCGGCGGCTTCACGCAACAGATCTGTCGGTGTCGACGGCTTCCCACA 360 ************************ ***** consensus_8375#0 ACGAGATTGGATTTTTTTTTTCATG-----------------------AGATTGGATTGG 314 consensus_8375#1 ACGAGATTGGATTTTTTTTTTCATGGGATTTCAGTATTTTGTTTTTTGAGATTGGATTGG 420 ************************* ************ consensus_8375#0 ATTTATTGGAGAGGAGTTTAGGATTTGTCTCGTGTGTCTTGAGATTGGATTTGGGGGGAT 374 consensus_8375#1 ATTTATTGGAGAGGAGTTTAGGATTTGTCCCGTGTGTCTTGAGATTGGATTTGGGGGGAT 480 ***************************** ****************************** consensus_8375#0 TTTACGATTTTTCCGTGTGTGTTTGGGGAATCAGACTCGGATTGAACGCAACACAGCGAT 434 consensus_8375#1 TTTACGATTTTTCCGTGTGTGTTTGGGGAATCAGACTCGGATTGAACGCAACACAGCGAT 540 ************************************************************ consensus_8375#0 CTGGGAGGGTTTTTTTTCGCGTCATTAAATCGGACTATCCTTTTTCTTTTCTTTTTATAT 494 consensus_8375#1 CTGGGAGGGTTTTTTT-CGCGTCATTGAATCGGACTATCCTTTTTCTTTTCTTTTTATA- 598 **************** ********* ******************************** consensus_8375#0 ATGTTTTTTCGCCCTTTTATTTTGTATAAATTTTGTGTGTATAAAACTTCAGTTTTTAAA 554 consensus_8375#1 -TGGTTTTTCGCCCTTTTATTTTGNATAAAATTTGGGNGTATAAAGCTTCAGTTT----- 652 ** ******************** ***** **** * ******* ********* consensus_8375#0 GAAACACGTAGTCCCCCGTCCAAAAAACTCAACCTAATATTGGATTAGACGTATATTGGA 614 consensus_8375#1 ------------------------------------------------------------ consensus_8375#0 TTAGAAAGGACAACAAATTTAGGCATACTAGAAAACGTAATATCTAATACTAAATTGGTT 674 consensus_8375#1 ------------------------------------------------------------ consensus_8375#0 TTAAATAGAATATGAGGAAAGGTTGGGTCGTTGGTTCACATGGTTTATTTTTTCTATCTA 734 consensus_8375#1 ------------------------------------------------------------ consensus_8375#0 TATTATCTTATGCATACATTGGGATTATCAGTAGTTTCTCATTCTGTAATGAATTTCAGT 794 consensus_8375#1 ------------------------------------------------------------ consensus_8375#0 TTTGAAAACTACATACCAATTTAAAATGGAAGATGGTTCACCTCTCATTACGACGGGTGA 854 consensus_8375#1 ------------------------------------------------------------ consensus_8375#0 TATAAGAGCAAGTTTAATAGTATAGCTCACTACTAGCTCCAAATCATCTATAGCTAAATT 914 consensus_8375#1 ------------------------------------------------------------ consensus_8375#0 TATACAATAGTTGTTTACTATACTATTAATACTTAGTCCCACCTATCATACACACATTAT 974 consensus_8375#1 ------------------------------------------------------------ consensus_8375#0 GTCTTAAAGTCCGTGCTGTAGCTGGCTACAGATCTGTAGTCCACTGTTCTTCTCTTTTCC 1034 consensus_8375#1 ------------------------------------------------------------ consensus_8375#0 TTTATCTCTTTAAAATATGTTTATAGCTGGCTTATAGCCTACTATTGTATCTGCTCTAAG 1094 consensus_8375#1 ------------------------------------------------------------ consensus_8375#0 GCTATCTTTGCTGGTTCACTAGAAAATCAGTTGTCAGTACAGTCAGTAATGTGCACATGG 1154 consensus_8375#1 ------------------------------------------------------------ consensus_8375#0 CGATTGGATTGGTGGATGACATGTACGCGGGTATGCTGTTTTTACCACACATAAATTTGC 1214 consensus_8375#1 ------------------------------------------------------------ consensus_8375#0 AAACAA 1220 consensus_8375#1 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||