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Oryza sativa
cluster # 8375 cluster # 8375       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8375#0 length = 1220 sequences # 3  
consensus_8375#1 length = 652 sequences # 2  

consensusID : consensus_8375#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1220
fasta sequence
                              [TACTTCTCCACTCACTCCCCTCTCTCTCTCACATCGGTGGGCGAGCGGGGTGCTGCCTCACCGCGAGCACCGGCGGCACTTCCCAAACCATGACAGCAACGACGGCGCCCTCCCCACCGTGAGCAGCGGCAGCGACGGCGCCCTCTCCACCCTCAAGATCACCACGAGCGGCAGCGGTGGCGGCGACGCCCTCCCCCACCACGAGCGGCAGCGATGACGGCGTCAATGGCTTCCCCTGGTGGATCCGATGGCGACGCCACGTCGGCGGCTTCCCACAACGAGATTGGATTTTTTTTTTCATGAGATTGGATTGGATTTATTGGAGAGGAGTTTAGGATTTGTCTCGTGTGTCTTGAGATTGGATTTGGGGGGATTTTACGATTTTTCCGTGTGTGTTTGGGGAATCAGACTCGGATTGAACGCAACACAGCGATCTGGGAGGGTTTTTTTTCGCGTCATTAAATCGGACTATCCTTTTTCTTTTCTTTTTATATATGTTTTTTCGCCCTTTTATTTTGTATAAATTTTGTGTGTATAAAACTTCAGTTTTTAAAGAAACACGTAGTCCCCCGTCCAAAAAACTCAACCTAATATTGGATTAGACGTATATTGGATTAGAAAGGACAACAAATTTAGGCATACTAGAAAACGTAATATCTAATACTAAATTGGTTTTAAATAGAATATGAGGAAAGGTTGGGTCGTTGGTTCACATGGTTTATTTTTTCTATCTATATTATCTTATGCATACATTGGGATTATCAGTAGTTTCTCATTCTGTAATGAATTTCAGTTTTGAAAACTACATACCAATTTAAAATGGAAGATGGTTCACCTCTCATTACGACGGGTGATATAAGAGCAAGTTTAATAGTATAGCTCACTACTAGCTCCAAATCATCTATAGCTAAATTTATACAATAGTTGTTTACTATACTATTAATACTTAGTCCCACCTATCATACACACATTATGTCTTAAAGTCCGTGCTGTAGCTGGCTACAGATCTGTAGTCCACTGTTCTTCTCTTTTCCTTTATCTCTTTAAAATATGTTTATAGCTGGCTTATAGCCTACTATTGTATCTGCTCTAAGGCTATCTTTGCTGGTTCACTAGAAAATCAGTTGTCAGTACAGTCAGTAATGTGCACATGGCGATTGGATTGGTGGATGACATGTACGCGGGTATGCTGTTTTTACCACACATAAATTTGCAAACAA]

[+] EMBL AK120463             [TACTTCTCCACTCACTCCCCTCTCTCTCTCACATCGGTGGGCGAGCGGGGTGCTGCCTCACCGCGAGCACCGGCGGCACTTCCCAAACCATGACAGCAACGACGGCGCCCTCCCCACCGTGAGCAGCGGCAGCGACGGCGCCCTCTCCACCCTCAAGATCACCACGAGCGGCAGCGGTGGCGGCGACGCCCTCCCCCACCACGAGCGGCAGCGATGACGGCGTCAATGGCTTCCCCTGGTGGATCCGATGGCGACGCCACGTCGGCGGCTTCCCACAACGAGATTGGATTTTTTTTTTCATGAGATTGGATTGGATTTATTGGAGAGGAGTTTAGGATTTGTCTCGTGTGTCTTGAGATTGGATTTGGGGGGATTTTACGATTTTTCCGTGTGTGTTTGGGGAATCAGACTCGGATTGAACGCAACACAGCGATCTGGGAGGGTTTTTTTTCGCGTCATTAAATCGGACTATCCTTTTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AK071612             [         ACTCACTCCCCTCTCTCTCTCACATCGGTGGGCGAGCGGGGTGCTGCCTCACCGCGAGCACCGGCGGCACTTCCCAAACCATGACAGCAACGACGGCGCCCTCCCCACCGTGAGCAGCGGCAGCGACGGCGCCCTCTCCACCCTCAAGATCACCACGAGCGGCAGCGGTGGCGGCGACGCCCTCCCCCACCACGAGCGGCAGCGATGACGGCGTCAATGGCTTCCCCTGGTGGATCCGATGGCGACGCCACGTCGGCGGCTTCCCACAACGAGATTGGATTTTTTTTTTCATGAGATTGGATTGGATTTATTGGAGAGGAGTTTAGGATTTGTCTCGTGTGTCTTGAGATTGGATTTGGGGGGATTTTACGATTTTTCCGTGTGTGTTTGGGGAATCAGACTCGGATTGAACGCAACACAGCGATCTGGGAGGGTTTTTTTTCGCGTCATTAAATCGGACTATCCTTTTTCTTTTCTTTTTATATATGTTTTTTCGCCCTTTTATTTTGTATAAATTTTGTGTGTATAAAACTTCAGTTTTTAAAGAAACACGTAGTCCCCCGTCCAAAAAACTCAACCTAATATTGGATTAGACGTATATTGGATTAGAAAGGACAACAAATTTAGGCATACTAGAAAACGTAATATCTAATACTAAATTGGTTTTAAATAGAATATGAGGAAAGGTTGGGTCGTTGGTTCACATGGTTTATTTTTTCTATCTATATTATCTTATGCATACATTGGGATTATCAGTAGTTTCTCATTCTGTAATGAATTTCAGTTTTGAAAACTACATACCAATTTAAAATGGAAGATGGTTCACCTCTCATTACGACGGGTGATATAAGAGCAAGTTTAATAGTATAGCTCACTACTAGCTCCAAATCATCTATAGCTAAATTTATACAATAGTTGTTTACTATACTATTAATACTTAGTCCCACCTATCATACACACATTATGTCTTAAAGTCCGTGCTGTAGCTGGCTACAGATCTGTAGTCCACTGTTCTTCTCTTTTCCTTTATCTCTTTAAAATATGTTTATAGCTGGCTTATAGCCTACTATTGTATCTGCTCTAAGGCTATCTTTGCTGGTTCACTAGAAAATCAGTTGTCAGTACAGTCAGTAATGTGCACATGGCGATTGGATTGGTGGATGACATGTACGCGGGTATGCTGTTTTTACCACACATAAATTTGCAAACAA]
[+] EMBL CB644352             [                                ATCGGCGGGCGAGCGGGGTGCTGCCTCACCGCGAGCACCGGCGGCACTTCCCAAACCATGACAGCAACGACGGCGCCCTCCCCACCGTGAGCAGCGGCAGCGACGGCGCCCTCTCCACCCTCAAGATCACCACGAGCGGCAGCGGTGGCGGCGACGCCCTCCCCCACCACGAGCGGCAGCGATGACGGCGTCAATGGCTTCCCCTGGTGGATCCGATGGCGACGCCACGTCGGCGGCTTCCCACAACGAGATTGGATTTTTTTTTTCATGAGATTGGATTGGATTTATTGGAGAGGAGTTTAGGATTTGTCTCGTGTGTCTTGAGATTGGATTTGGGGGGATTTTACGATTTTTCCGTGTGTGTTTGGGGAATCAGACTCGGATTGAACGCAACACAGCGATCTGGGAGGGTTTTTTTTCGCGTCATTAAATCGGACTATCCTTTTTCTTTTCTTTTTATATATGTTTTTTCGCCCTTTTATTTTGTATAAATTTTGTGTGTATAAAACTTCAGTTTTTAAAGAAACACGTAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]


>consensus_8375#0 TACTTCTCCACTCACTCCCCTCTCTCTCTCACATCGGTGGGCGAGCGGGGTGCTGCCTCA CCGCGAGCACCGGCGGCACTTCCCAAACCATGACAGCAACGACGGCGCCCTCCCCACCGT GAGCAGCGGCAGCGACGGCGCCCTCTCCACCCTCAAGATCACCACGAGCGGCAGCGGTGG CGGCGACGCCCTCCCCCACCACGAGCGGCAGCGATGACGGCGTCAATGGCTTCCCCTGGT GGATCCGATGGCGACGCCACGTCGGCGGCTTCCCACAACGAGATTGGATTTTTTTTTTCA TGAGATTGGATTGGATTTATTGGAGAGGAGTTTAGGATTTGTCTCGTGTGTCTTGAGATT GGATTTGGGGGGATTTTACGATTTTTCCGTGTGTGTTTGGGGAATCAGACTCGGATTGAA CGCAACACAGCGATCTGGGAGGGTTTTTTTTCGCGTCATTAAATCGGACTATCCTTTTTC TTTTCTTTTTATATATGTTTTTTCGCCCTTTTATTTTGTATAAATTTTGTGTGTATAAAA CTTCAGTTTTTAAAGAAACACGTAGTCCCCCGTCCAAAAAACTCAACCTAATATTGGATT AGACGTATATTGGATTAGAAAGGACAACAAATTTAGGCATACTAGAAAACGTAATATCTA ATACTAAATTGGTTTTAAATAGAATATGAGGAAAGGTTGGGTCGTTGGTTCACATGGTTT ATTTTTTCTATCTATATTATCTTATGCATACATTGGGATTATCAGTAGTTTCTCATTCTG TAATGAATTTCAGTTTTGAAAACTACATACCAATTTAAAATGGAAGATGGTTCACCTCTC ATTACGACGGGTGATATAAGAGCAAGTTTAATAGTATAGCTCACTACTAGCTCCAAATCA TCTATAGCTAAATTTATACAATAGTTGTTTACTATACTATTAATACTTAGTCCCACCTAT CATACACACATTATGTCTTAAAGTCCGTGCTGTAGCTGGCTACAGATCTGTAGTCCACTG TTCTTCTCTTTTCCTTTATCTCTTTAAAATATGTTTATAGCTGGCTTATAGCCTACTATT GTATCTGCTCTAAGGCTATCTTTGCTGGTTCACTAGAAAATCAGTTGTCAGTACAGTCAG TAATGTGCACATGGCGATTGGATTGGTGGATGACATGTACGCGGGTATGCTGTTTTTACC ACACATAAATTTGCAAACAA



consensusID : consensus_8375#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 652
fasta sequence
                              [TTCTGTCTCGTGGCTCTCTCCGTCTCCCCGTCTCTACTTCTCCACTCACTCCCCAGCGACGGCGGCGTCGCTTCTCTCTCTCACATCGGTGGGCGAGCGGGGTGCTGCCTCACCGCGAGCACCGGCGGCACTTCCCAAACCATGACAACAACGACGGCGCCCTCCCCACCGTGAGCAGCGGCAGCGACGGCGCCCTCTCCACCCTCAAGATCACCACGAGCGGCAGCGGTGGCGGCGACGCCCTCCCCCACCACGAGCGGCAGCGATGACGGCGTCAATGGCTTCCCCTGGTGGATCCGATGGCGACGCCACGTCGGCGGCTTCACGCAACAGAT-CTGTCGGTGTCGACGGCTTCCCACAACGAGATTGGATTTTTTTTTTCATGGGATTTCAGTATTTTGTTTTTTGAGATTGGATTGGATTTATTGGAGAGGAGTTTAGGATTTGTCCCGTGTGTCTTGAGATTGGATTTGGGGGGATTTTACGATTTTTCCGTGTGTGTTTGGGGAATCAGACTCGGATTGAACGCAACACAGCGATCTGGGAGGGTTTTTTTCGCGTCATTGAATCGGACTATCCTTTTTCTTTTCTTTTTATATGGTTTTTCGCCCTTTTATTTTGNATAAAATTTGGGNGTATAAAGCTTCAGTTT]

[+] EMBL CA765378             [TTCTGTCTCGTGGCTCTCTCCGTCTCCCCGTCTCTACTTCTCCACTCACTCCCCAGCGACGGCGGCGTCGCTTCTCTCTCTCACATCGGTGGGCGAGCGGGGTGCTGCCTCACCGCGAGCACCGGCGGCACTTCCCAAACCATGACAACAACGACGGCGCCCTCCCCACCGTGAGCAGCGGCAGCGACGGCGCCCTCTCCACCCTCAAGATCACCACGAGCGGCAGCGGTGGCGGCGACGCCCTCCCCCACCACGAGCGGCAGCGATGACGGCGTCAATGGCTTCCCCTGGTGGATCCGATGGCGACGCCACGTCGGCGGCTTCACGCAACAGAT CTGTCGGTGTCGACGGCTTCCCACAACGAGATTGGATTTTTTTTTTCATGGGATTTCAGTATTTTGTTTTTTGAGATTGGATTGGATTTATTGGAGAGGAGTTTAGGATTTGTCCCGTGTGTCTTGAGATTGGATTTGGGGGGATTTTACGATTTTTCCGTGTGTGTTTGGGGAATCAGACTCGGATTGAACGCAACACAGCGATCTGGGAGGGTTTTTTTCGCGTCATTGAATCGGACTATCCTTTTTCTTTTCTTTTTATATGGTTTTTCGCCCTTTTATTTTGNATAAAATTTGGGNGTATAAAGCTTCAGTTT]
[+] EMBL BI804330             [          TGGCTCTCTCCGTCTCCCCGTCTCTACTTCTCCACTCACTCCCCAGCGACGGCGGCGTCGCTTCTCTCTCTCACATCGGTGGGCGAGCGGGGT CTGCCTCACCGCGAGCACCGGCGGCACTTCCC AACCATGACAACAACGACGGCGCCCTCCCCACCGTGAGCAGCGGCAGCGACGGCGCCCTCTCCACCCTCAAGATCACCACGAGCGGCAGCGGTGGCGGCGACGCCCTCCCCCACCACGAGCGGCAGCGATGACGGCGTCAATGGCTTCCCCTGGTGGATCCGATGGCGACGCCACGTCGGCGGCTTCACGCAACAGATCCTGTCGGTGTCGACGGCTTCCCCCAACGAGATTGGATTTTTTTTTTCATGGGATTTCAGTATTTTGTTTTTTGAGATTGGATTGGATTTATTGGAGAGGAGTTTAGGATTTGTCTCGTGTGTCTTGAGATTGGATTTGGGGGGATTTTACGATTTTTCCGTGTGTGTTTGGGGAATCAGACTCGGATTGAACGCAAaa                                                                                                                       ]


>consensus_8375#1 TTCTGTCTCGTGGCTCTCTCCGTCTCCCCGTCTCTACTTCTCCACTCACTCCCCAGCGAC GGCGGCGTCGCTTCTCTCTCTCACATCGGTGGGCGAGCGGGGTGCTGCCTCACCGCGAGC ACCGGCGGCACTTCCCAAACCATGACAACAACGACGGCGCCCTCCCCACCGTGAGCAGCG GCAGCGACGGCGCCCTCTCCACCCTCAAGATCACCACGAGCGGCAGCGGTGGCGGCGACG CCCTCCCCCACCACGAGCGGCAGCGATGACGGCGTCAATGGCTTCCCCTGGTGGATCCGA TGGCGACGCCACGTCGGCGGCTTCACGCAACAGATCTGTCGGTGTCGACGGCTTCCCACA ACGAGATTGGATTTTTTTTTTCATGGGATTTCAGTATTTTGTTTTTTGAGATTGGATTGG ATTTATTGGAGAGGAGTTTAGGATTTGTCCCGTGTGTCTTGAGATTGGATTTGGGGGGAT TTTACGATTTTTCCGTGTGTGTTTGGGGAATCAGACTCGGATTGAACGCAACACAGCGAT CTGGGAGGGTTTTTTTCGCGTCATTGAATCGGACTATCCTTTTTCTTTTCTTTTTATATG GTTTTTCGCCCTTTTATTTTGNATAAAATTTGGGNGTATAAAGCTTCAGTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8375#0      ----------------------------------TACTTCTCCACTCACTCCCC------ 20
consensus_8375#1      TTCTGTCTCGTGGCTCTCTCCGTCTCCCCGTCTCTACTTCTCCACTCACTCCCCAGCGAC 60
                                                        ********************      

consensus_8375#0      ------------TCTCTCTCTCACATCGGTGGGCGAGCGGGGTGCTGCCTCACCGCGAGC 68
consensus_8375#1      GGCGGCGTCGCTTCTCTCTCTCACATCGGTGGGCGAGCGGGGTGCTGCCTCACCGCGAGC 120
                                  ************************************************

consensus_8375#0      ACCGGCGGCACTTCCCAAACCATGACAGCAACGACGGCGCCCTCCCCACCGTGAGCAGCG 128
consensus_8375#1      ACCGGCGGCACTTCCCAAACCATGACAACAACGACGGCGCCCTCCCCACCGTGAGCAGCG 180
                      *************************** ********************************

consensus_8375#0      GCAGCGACGGCGCCCTCTCCACCCTCAAGATCACCACGAGCGGCAGCGGTGGCGGCGACG 188
consensus_8375#1      GCAGCGACGGCGCCCTCTCCACCCTCAAGATCACCACGAGCGGCAGCGGTGGCGGCGACG 240
                      ************************************************************

consensus_8375#0      CCCTCCCCCACCACGAGCGGCAGCGATGACGGCGTCAATGGCTTCCCCTGGTGGATCCGA 248
consensus_8375#1      CCCTCCCCCACCACGAGCGGCAGCGATGACGGCGTCAATGGCTTCCCCTGGTGGATCCGA 300
                      ************************************************************

consensus_8375#0      TGGCGACGCCACGTCGGCGGCTTC-------------------------------CCACA 277
consensus_8375#1      TGGCGACGCCACGTCGGCGGCTTCACGCAACAGATCTGTCGGTGTCGACGGCTTCCCACA 360
                      ************************                               *****

consensus_8375#0      ACGAGATTGGATTTTTTTTTTCATG-----------------------AGATTGGATTGG 314
consensus_8375#1      ACGAGATTGGATTTTTTTTTTCATGGGATTTCAGTATTTTGTTTTTTGAGATTGGATTGG 420
                      *************************                       ************

consensus_8375#0      ATTTATTGGAGAGGAGTTTAGGATTTGTCTCGTGTGTCTTGAGATTGGATTTGGGGGGAT 374
consensus_8375#1      ATTTATTGGAGAGGAGTTTAGGATTTGTCCCGTGTGTCTTGAGATTGGATTTGGGGGGAT 480
                      ***************************** ******************************

consensus_8375#0      TTTACGATTTTTCCGTGTGTGTTTGGGGAATCAGACTCGGATTGAACGCAACACAGCGAT 434
consensus_8375#1      TTTACGATTTTTCCGTGTGTGTTTGGGGAATCAGACTCGGATTGAACGCAACACAGCGAT 540
                      ************************************************************

consensus_8375#0      CTGGGAGGGTTTTTTTTCGCGTCATTAAATCGGACTATCCTTTTTCTTTTCTTTTTATAT 494
consensus_8375#1      CTGGGAGGGTTTTTTT-CGCGTCATTGAATCGGACTATCCTTTTTCTTTTCTTTTTATA- 598
                      **************** ********* ******************************** 

consensus_8375#0      ATGTTTTTTCGCCCTTTTATTTTGTATAAATTTTGTGTGTATAAAACTTCAGTTTTTAAA 554
consensus_8375#1      -TGGTTTTTCGCCCTTTTATTTTGNATAAAATTTGGGNGTATAAAGCTTCAGTTT----- 652
                       ** ******************** ***** **** * ******* *********     

consensus_8375#0      GAAACACGTAGTCCCCCGTCCAAAAAACTCAACCTAATATTGGATTAGACGTATATTGGA 614
consensus_8375#1      ------------------------------------------------------------
                                                                                  

consensus_8375#0      TTAGAAAGGACAACAAATTTAGGCATACTAGAAAACGTAATATCTAATACTAAATTGGTT 674
consensus_8375#1      ------------------------------------------------------------
                                                                                  

consensus_8375#0      TTAAATAGAATATGAGGAAAGGTTGGGTCGTTGGTTCACATGGTTTATTTTTTCTATCTA 734
consensus_8375#1      ------------------------------------------------------------
                                                                                  

consensus_8375#0      TATTATCTTATGCATACATTGGGATTATCAGTAGTTTCTCATTCTGTAATGAATTTCAGT 794
consensus_8375#1      ------------------------------------------------------------
                                                                                  

consensus_8375#0      TTTGAAAACTACATACCAATTTAAAATGGAAGATGGTTCACCTCTCATTACGACGGGTGA 854
consensus_8375#1      ------------------------------------------------------------
                                                                                  

consensus_8375#0      TATAAGAGCAAGTTTAATAGTATAGCTCACTACTAGCTCCAAATCATCTATAGCTAAATT 914
consensus_8375#1      ------------------------------------------------------------
                                                                                  

consensus_8375#0      TATACAATAGTTGTTTACTATACTATTAATACTTAGTCCCACCTATCATACACACATTAT 974
consensus_8375#1      ------------------------------------------------------------
                                                                                  

consensus_8375#0      GTCTTAAAGTCCGTGCTGTAGCTGGCTACAGATCTGTAGTCCACTGTTCTTCTCTTTTCC 1034
consensus_8375#1      ------------------------------------------------------------
                                                                                  

consensus_8375#0      TTTATCTCTTTAAAATATGTTTATAGCTGGCTTATAGCCTACTATTGTATCTGCTCTAAG 1094
consensus_8375#1      ------------------------------------------------------------
                                                                                  

consensus_8375#0      GCTATCTTTGCTGGTTCACTAGAAAATCAGTTGTCAGTACAGTCAGTAATGTGCACATGG 1154
consensus_8375#1      ------------------------------------------------------------
                                                                                  

consensus_8375#0      CGATTGGATTGGTGGATGACATGTACGCGGGTATGCTGTTTTTACCACACATAAATTTGC 1214
consensus_8375#1      ------------------------------------------------------------
                                                                                  

consensus_8375#0      AAACAA 1220
consensus_8375#1      ------
                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)