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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8383#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1558 fasta sequence
[CGATGCTCGCGAAGTTTCTTTTCTCCGTTTCTCGCCTCGTCCCCTTCCACACGACTCTACTAAAAAAACTCGATCGTCTCTCTCAAAAAAAAAGACTCGATCGAATGAAAAGAGGATTTTCTTCTTCTTCTTCCCCAATGAGCTCGTTGAGTTCTCGCTTCCATCGCTACTAGGGATTTGGAATACGCTGCGAATGCAATACTGATGTCTTGAAGAAAATTCTGAGGAAGTTGGTTGCTTGGTTCAGTGGAAACCCGGGGAATTTGTACTGACTTGGGGCACAGGTTCGCATCCATCTGCGGTGATTTTGTTCTGCAGTCCTCAATGCGTGGAGAGAATACGGATGGGAGGAGGGAGGTTCAGCTGGGCCCTCACACGATTCAGACACATGGAGTTAGATTGGCCAGAAATCACCTGCATGATTGGGTCGTTCTTATTTTACTTGCTGCAGTTGTGATTGCCCTGCATTTCGCTCCTCCATTTAGCCGGTTTGTTGGGAAGGATATGATGACTTATGTTAGTTACCCGGTGAAACAAAGCACTGTACCAGCATGGGGTGTTCCTATAATATCCATAGTTTGCCCTGTAATTATCTTTCTATCCGTTTATATCGCTAGGAGAGATGTCTATGATCTTCATCACGCAACATTAGGTGTGCTTTACTCGGTGCTGATAACTGCAGTTGTAACTACTGTGGTAAAGAATGCAGTAGGAAGACCTAGGCCAGACTTCTTTTGGCGGTGTTTTCCTGATGGAAAGCAGTTATATGATCAAGTGACAGGTGATGTGATTTGTCATGGAGAGAAAAGCTTCTTAAAGGATGGACGCAAGAGTTTTCCTAGTGGACACACGTCGTGGTCTTTTGCTGGACTTGGATTTCTGTCACTCTACCTATCTGGCAAAATTAAGGTGTTTGATCGCCAAGGTCATGTTGCCAAACTTTGCATTATGATTCTTCCCCTTCTTATTGCTTCACTCGTCGGGATTTCTAGAATAGATGACTATCGACACCACTGGGAGGATGTGTTTGCT-GCGGCCTACTAGGATTTATCATGGCGATGCTCTGTTACTTGCACTTCTTTCCACCTCCATACCATCATCAAGGTTGGGGACCGTATGCATACTTCCATATGCTTGAGGAGCTTCAAGTGGCCAACTCCCACAATGCAGAAAGCCAGCAGTCAGTGTGTGGGCATCATGTTGAGCTATCTAGACCACACAATAGCAGGACATCAAGAAATGATCTGGAAGCTGGTCGTGTGTAACATCCCTAGCATGTTGAAAACCGAGGAAGCGACATGTACAGTAAGCATGACTAAACCTTCTATGCTTGTAATCAACAAACATTAGCAACTAG-AGCTCAAGCCTCATACTGAATTATCCAACTATCATGTGTGAAATCATAAAGTTAGCATATGCTAGCGTAGTCGTCCCCAGGTCTACGTCTACCTGTTGCGTCCAAATCGTTTCCATGTCTTAGTGTGTTTTAGTTGCTAGTGGAAGTACTGATTGGGAACTTATTCCTGAGTTAAAAAACGAAACATAATGGAGGTCCGAA]
[+] EMBL AK073130 [CGATGCTCGCGAAGTTTCTTTTCTCCGTTTCTCGCCTCGTCCCCTTCCACACGACTCTACTAAAAAAACTCGATCGTCTCTCTCAAAAAAAAAGACTCGATCGAATGAAAAGAGGATTTTCTTCTTCTTCTTCCCCAATGAGCTCGTTGAGTTCTCGCTTCCATCGCTACTAGGGATTTGGAATACGCTGCGAATGCAATACTGATGTCTTGAAGAAAATTCTGAGGAAGTTGGTTGCTTGGTTCAGTGGAAACCCGGGGAATTTGTACTGACTTGGGGCACAGGTTCGCATCCATCTGCGGTGATTTTGTTCTGCAGTCCTCAATGCGTGGAGAGAATACGGATGGGAGGAGGGAGGTTCAGCTGGGCCCTCACACGATTCAGACACATGGAGTTAGATTGGCCAGAAATCACCTGCATGATTGGGTCGTTCTTATTTTACTTGCTGCAGTTGTGATTGCCCTGCATTTCGCTCCTCCATTTAGCCGGTTTGTTGGGAAGGATATGATGACTTATGTTAGTTACCCGGTGAAACAAAGCACTGTACCAGCATGGGGTGTTCCTATAATATCCATAGTTTGCCCTGTAATTATCTTTCTATCCGTTTATATCGCTAGGAGAGATGTCTATGATCTTCATCACGCAACATTAGGTGTGCTTTACTCGGTGCTGATAACTGCAGTTGTAACTACTGTGGTAAAGAATGCAGTAGGAAGACCTAGGCCAGACTTCTTTTGGCGGTGTTTTCCTGATGGAAAGCAGTTATATGATCAAGTGACAGGTGATGTGATTTGTCATGGAGAGAAAAGCTTCTTAAAGGATGGACGCAAGAGTTTTCCTAGTGGACACACGTCGTGGTCTTTTGCTGGACTTGGATTTCTGTCACTCTACCTATCTGGCAAAATTAAGGTGTTTGATCGCCAAGGTCATGTTGCCAAACTTTGCATTATGATTCTTCCCCTTCTTATTGCTTCACTCGTCGGGATTTCTAGAATAGATGACTATCGACACCACTGGGAGGATGTGTTTGCTGGCGGCCTACTAGGATTTATCATGGCGATGCTCTGTTACTTGCACTTCTTTCCACCTCCATACCATCATCAAGGTTGGGGACCGTATGCATACTTCCATATGCTTGAGGAGCTTCAAGTGGCCAACTCCCACAATGCAGAAAGCCAGCAGTCAGTGTGTGGGCATCATGTTGAGCTATCTAGACTACACAATAGCAGGACATCAAGAAATGATCTGGAAGCTGGTCGTGTGTAACATCCCTAGCATGTTGAAAACCGAGGAAGCGGCATGTACAGTAAGCATGACTAAACCTTCTATGCTTGTAATCAACAAATATTAGCAACTAG AGCTCAAGCCTCATACTGAATTATCCAACTATCATGTGTGAAATCATAAAGTTAGCATATGCTAGCGTAGTCGTCCCCAGGTCTACGTCTACCTGTTGCGTCCAAATCGTTTCCATGTCTTAGTGTGTTTTAGTTGCTAGTGGAAGTACTGATTGGGAACTTATTCCTGAGTTAAAAAACGAAACATAATGGAGGTCCGAA]
[+] EMBL BI802928 [ GAGTTTTCCTAGTGGACACACGTCGTGTTCTTTTGCTGGACTTGTATTTCTGTCACTCTACCTATCTGGCAAAATTAAGGTGTTTGATCGCCAAGGTCATGTTGCCAAACTTTGCATTATGATTCTTCCCCTTCTTATTGCTTCACTCGTCGGGATTTCTAGAATAGATGACTATCGACACCACTGGGAGGATGTGTTTGCT GCGGCCTACTAGGATTTATCATGGCGATGCTCTGTTACTTGCACTTCTTTCCACCTCCATACCATCATCAAGGTTGGGGACCGTATGCATACTTCCATATGCTTGAGGAGCTTCAAGTGGCCAACTCCCACAATGCAGAAAGCCAGCAGTCAGTGTGTGGGCATCATGTTGAGCTATCTAGACCACAC ATAGCAGGACATCAAGAAATGATCTGGAAGCTGGTCGTGTGTAACATCCCTAGCATGTTGAAAACCGAGGAAGCGACATGTACAGTAAGCATGACTAAACCTTCTATGCTTGTAATCAACAAACATTAGCAACTAGCAGCTCAAGCCTCATACTGAATTATCCAAaaa ]
[+] EMBL BI801520 [ ACCTATCTGGC AATTAAGGTGTTTGATCGCCAAGGTCATGTTGCC AACTTTGCATTATGATTCTTCCCCTTCTTATTGCTTCACTCGTCGGGATTTCTAGAATAGATGACTATCGACACCACTGGGAGGATGTGTTTGCT GCGGCCTACTAGGATTTATCATGGCGATGCTCTGTTACTTGCACTTCTTTCCACCTCCATACCATCATCAAGGTTGGGGACCGTATGCATACTTCCATATGCTTGAGGAGCTTCAAGTGGCCAACTCCCACAATGCAGAAAGCCAGCAGTCAGTGTGTGGGCATCATGTTGAGCTATCTAGA CACAC ATAGCAGGACATCAAGAAATGATCTGGAAGCTGGTCGTGTGTAACATCCCTAGCATGTTGAAAACCGAGGAAGCGACATGTACAGTAAGCATGACTAAACCTTCTATGCTTGTAATCAAC AACATTAGC ACTAG AGCTCAAGCCTCATACTGAATTATCC ACTATCATGTGTGAAATCAAAAAaaaa ]
[+] EMBL CA757196 [ AGAAAGCCAGCAGTCAGTGTGTGGGCATCATGTTGAGCTATCTAGACAACACAATAGCAGGACATCAAGAAATGATCTGGAAGCTGGTCGTGTGTAACATCCCTAGCATGTTGAAAACCGAGGAAGCGACATGTACAGTAAGCATGACTAAACCTTCTATGCTTGTAATCAACAAACATTAGCAACTAG AGCTCAAGCCTCATACTGAATTATCCAACTATCATGTGTGAAATCATAAAGTTAGCATATGCTAGCGTAGTCGTCCCCAGGTCTACGTCTACCTGTTGCGTCCAAAaaaaa ]
consensusID : consensus_8383#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence
[CGTTGAGTTCTCGCTTCCATCGCTACTAGGGATTTGGAATACGCTGCGAATGCAATACTGATGTCTTGAAGAAAATTCTGAGGAAGTTGGTTGCTTGGTTCAGTGGAAACCCGGGGAATTTGTACTGACTTGGGGCACAGGTTCGCATCCATCTGCGGTGATTTTGTTCTGCAGTCCTCAATGCGTGGAGAGAATACGTATTAATTTTCAACAGGATGGGAGGGAGGGAGGTTCAGCTGGGCCCTCACACGATTCAGACACATGGAGTTAGATTGGCCAGAAATCACCTGCATGATTGGGTCGTTCTTATTTTACTTGCTGCAGTTGTGATTGCCCTGCATTTCGCTCCTCCATTTAGCCGGTTTGTTGGGAAGGATATGATGACTTATGTTAGTTACCCGGTGAAACAAAGCACTGTNACCAGCATGGGGTGTTCCTATAATATCCATAGTTTGCCCTGTAATTATCTTTCTATCCGTTTATATCGCTAGGAGAGATGTCTATGATCTTCATCACGCAACATTAGGTGTGCTTTACTCGGTGCTGATAACTGCAGTTGTAACTACTGTGGTAAAGAATGCAGTAGGAAGACCTAGGCCAGACTTCTNTTTGGCGGTGTTTTCCTGATGGAAAGCAGTTATATGATCAAGTGACAGGTGATGTGATTTGTCATGGAGAGA]
[+] EMBL CF316601 [CGTTGAGTTCTCGCTTCCATCGCTACTAGGGATTTGGAATACGCTGCGAATGCAATACTGATGTCTTGAAGAAAATTCTGAGGAAGTTGGTTGCTTGGTTCAGTGGAAACCCGGGGAATTTGTACTGACTTGGGGCACAGGTTCGCATCCATCTGCGGTGATTTTGTTCTGCAGTCCTCAATGCGTGGAGAGAATACGTATTAATTTTCAACAGGATGGGAGGGAGGGAGGTTCAGCTGGGCCCTCACACGATTCAGACACATGGAGTTAGATTGGCCAGAAATCACCTGCATGATTGGGTCGTTCTTATTTTACTTGCTGCAGTTGTGATTGCCCTGCATTTCGCTCCTCCATTTAGCCGGTTTGTTGGGAAGGATATGATGACTTATGTTAGTTACCCGGTGAAACAAAGCACTGTNACCAGCATGGGGTGTTCCTATAATATCCATAGTTTGCCCTGTAATTATCTTTCTATCCGTTTATATCGCTAGGAGAGATGTCTATGATCTTCATCACGCAACATTAGGTGTGCTTTACTCGGTGCTGATAACTGCAGTTGTAACTACTGTGGTAAAGAATGCAGTAGGAAGACCTAGGCCAGACTTCTNTTTGGCGGTGTTTTCCTGATGGAAAGCAGTTATATGATCAAGTGACAGGTGATGTGATTTGTCATGGAGAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8383#0 CGATGCTCGCGAAGTTTCTTTTCTCCGTTTCTCGCCTCGTCCCCTTCCACACGACTCTAC 60
consensus_8383#1 ------------------------------------------------------------
consensus_8383#0 TAAAAAAACTCGATCGTCTCTCTCAAAAAAAAAGACTCGATCGAATGAAAAGAGGATTTT 120
consensus_8383#1 ------------------------------------------------------------
consensus_8383#0 CTTCTTCTTCTTCCCCAATGAGCTCGTTGAGTTCTCGCTTCCATCGCTACTAGGGATTTG 180
consensus_8383#1 ------------------------CGTTGAGTTCTCGCTTCCATCGCTACTAGGGATTTG 36
************************************
consensus_8383#0 GAATACGCTGCGAATGCAATACTGATGTCTTGAAGAAAATTCTGAGGAAGTTGGTTGCTT 240
consensus_8383#1 GAATACGCTGCGAATGCAATACTGATGTCTTGAAGAAAATTCTGAGGAAGTTGGTTGCTT 96
************************************************************
consensus_8383#0 GGTTCAGTGGAAACCCGGGGAATTTGTACTGACTTGGGGCACAGGTTCGCATCCATCTGC 300
consensus_8383#1 GGTTCAGTGGAAACCCGGGGAATTTGTACTGACTTGGGGCACAGGTTCGCATCCATCTGC 156
************************************************************
consensus_8383#0 GGTGATTTTGTTCTGCAGTCCTCAATGCGTGGAGAGAATACG----------------GA 344
consensus_8383#1 GGTGATTTTGTTCTGCAGTCCTCAATGCGTGGAGAGAATACGTATTAATTTTCAACAGGA 216
****************************************** **
consensus_8383#0 TGGGAGG-AGGGAGGTTCAGCTGGGCCCTCACACGATTCAGACACATGGAGTTAGATTGG 403
consensus_8383#1 TGGGAGGGAGGGAGGTTCAGCTGGGCCCTCACACGATTCAGACACATGGAGTTAGATTGG 276
******* ****************************************************
consensus_8383#0 CCAGAAATCACCTGCATGATTGGGTCGTTCTTATTTTACTTGCTGCAGTTGTGATTGCCC 463
consensus_8383#1 CCAGAAATCACCTGCATGATTGGGTCGTTCTTATTTTACTTGCTGCAGTTGTGATTGCCC 336
************************************************************
consensus_8383#0 TGCATTTCGCTCCTCCATTTAGCCGGTTTGTTGGGAAGGATATGATGACTTATGTTAGTT 523
consensus_8383#1 TGCATTTCGCTCCTCCATTTAGCCGGTTTGTTGGGAAGGATATGATGACTTATGTTAGTT 396
************************************************************
consensus_8383#0 ACCCGGTGAAACAAAGCACTGTA-CCAGCATGGGGTGTTCCTATAATATCCATAGTTTGC 582
consensus_8383#1 ACCCGGTGAAACAAAGCACTGTNACCAGCATGGGGTGTTCCTATAATATCCATAGTTTGC 456
********************** ************************************
consensus_8383#0 CCTGTAATTATCTTTCTATCCGTTTATATCGCTAGGAGAGATGTCTATGATCTTCATCAC 642
consensus_8383#1 CCTGTAATTATCTTTCTATCCGTTTATATCGCTAGGAGAGATGTCTATGATCTTCATCAC 516
************************************************************
consensus_8383#0 GCAACATTAGGTGTGCTTTACTCGGTGCTGATAACTGCAGTTGTAACTACTGTGGTAAAG 702
consensus_8383#1 GCAACATTAGGTGTGCTTTACTCGGTGCTGATAACTGCAGTTGTAACTACTGTGGTAAAG 576
************************************************************
consensus_8383#0 AATGCAGTAGGAAGACCTAGGCCAGACTTCTTTT-GGCGGTGTTTTCCTGATGGAAAGCA 761
consensus_8383#1 AATGCAGTAGGAAGACCTAGGCCAGACTTCTNTTTGGCGGTGTTTTCCTGATGGAAAGCA 636
******************************* ** *************************
consensus_8383#0 GTTATATGATCAAGTGACAGGTGATGTGATTTGTCATGGAGAGAAAAGCTTCTTAAAGGA 821
consensus_8383#1 GTTATATGATCAAGTGACAGGTGATGTGATTTGTCATGGAGAGA---------------- 680
********************************************
consensus_8383#0 TGGACGCAAGAGTTTTCCTAGTGGACACACGTCGTGGTCTTTTGCTGGACTTGGATTTCT 881
consensus_8383#1 ------------------------------------------------------------
consensus_8383#0 GTCACTCTACCTATCTGGCAAAATTAAGGTGTTTGATCGCCAAGGTCATGTTGCCAAACT 941
consensus_8383#1 ------------------------------------------------------------
consensus_8383#0 TTGCATTATGATTCTTCCCCTTCTTATTGCTTCACTCGTCGGGATTTCTAGAATAGATGA 1001
consensus_8383#1 ------------------------------------------------------------
consensus_8383#0 CTATCGACACCACTGGGAGGATGTGTTTGCTGCGGCCTACTAGGATTTATCATGGCGATG 1061
consensus_8383#1 ------------------------------------------------------------
consensus_8383#0 CTCTGTTACTTGCACTTCTTTCCACCTCCATACCATCATCAAGGTTGGGGACCGTATGCA 1121
consensus_8383#1 ------------------------------------------------------------
consensus_8383#0 TACTTCCATATGCTTGAGGAGCTTCAAGTGGCCAACTCCCACAATGCAGAAAGCCAGCAG 1181
consensus_8383#1 ------------------------------------------------------------
consensus_8383#0 TCAGTGTGTGGGCATCATGTTGAGCTATCTAGACCACACAATAGCAGGACATCAAGAAAT 1241
consensus_8383#1 ------------------------------------------------------------
consensus_8383#0 GATCTGGAAGCTGGTCGTGTGTAACATCCCTAGCATGTTGAAAACCGAGGAAGCGACATG 1301
consensus_8383#1 ------------------------------------------------------------
consensus_8383#0 TACAGTAAGCATGACTAAACCTTCTATGCTTGTAATCAACAAACATTAGCAACTAGAGCT 1361
consensus_8383#1 ------------------------------------------------------------
consensus_8383#0 CAAGCCTCATACTGAATTATCCAACTATCATGTGTGAAATCATAAAGTTAGCATATGCTA 1421
consensus_8383#1 ------------------------------------------------------------
consensus_8383#0 GCGTAGTCGTCCCCAGGTCTACGTCTACCTGTTGCGTCCAAATCGTTTCCATGTCTTAGT 1481
consensus_8383#1 ------------------------------------------------------------
consensus_8383#0 GTGTTTTAGTTGCTAGTGGAAGTACTGATTGGGAACTTATTCCTGAGTTAAAAAACGAAA 1541
consensus_8383#1 ------------------------------------------------------------
consensus_8383#0 CATAATGGAGGTCCGAA 1558
consensus_8383#1 -----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||