These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8385#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1954 fasta sequence [CACGCGCCTACCCGCACGCCGAGCTGTCGCCGCGTGTGCCCCCGCCTCGTTCCATCGCCTTCGCGTCGCGCTGTGCCCACTAAAACAATCCGGCCAGTTAACACTTCACACCCCCGCGCCCTCTCGTCCCCCTTCCTACGTGTCCCCCTCCCTGATCAAGAACGGATCACCGGCTCGGCGCCCCACTCTCTTCTTGGATCGGGGAGCGGGAGAGGGGGAGGAAGAGGCGGCGGATCAGAAGATTTGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGAGGTGGTGTGGGTGGGTGAGTGAGTGAGGAGTGATGGAGAAGGAGAGGAAGATGGAGGGGGAGAGGAGGGTGGAGGCGACGCGGCGGTGGGTGATCGCGGTGGGGTTCTGGGTGCAGGGGTTCCGGCTGTTCCCATGGCTGGGCGTCAACTTCTTCCTCAAGGACGGCATGGGCGTCGCCGCCTCCTCGCTGCAGATCCTCCAGGCGTCCGCCAACCTCCCCATGGTCGCCAAGCCGCTTCTCGGCCTCCTCTCCGACGCCGTCCCCATCCGCGGCCACCGCCGCCTCCCCTACGTCGCCATCGGCGCTCTCTTGCAGGCAATTTCATGGTTAGCAATTGCCCTCTGGCCAGCTATTTCTCTTCCAGTTCTTACCATTTTTCTCCTCTTGAGCAACTTTGGTGCATCCATATGTGAGGTTGCCAATGATGCCATTGTAGCAGAAGCTGGGAAGCAAGCAACCTTGTCCTCAGGGTCAGGTCAGCTTCAATCCTTTGCTTGGATGTTTGGTTCATCTGCTGGCGCTTTAGGAAATCTTGTTGGTGGCATTGCACTCAGTTACTTTTCTCCAAAAATCATGTTTCTGTTTTTTGCAATCCTTCTCGTGCTCCAGTTCTGCACTACTGTGGCTATACCTGAAAGCTCCCTCCAACTCCCAAAGGCAGATACTAATCTATCAGCTGTCTCCAGCGTCCGTAAGCAAATCAAAGAGCTGTCATATGCGCTGTGTATGCCTGAAATATTTTGGTCAGTCATTTGGTTTTCATTGTCCTATGCTGCCATACCATTTCTACTTGGGACCATGTTCTTCTATCAGACTGAAGTGTTAAGACTTGACTCATCAGTTATCGGTTTGTCCAAGGTTTTTGGACAAGTAACTCTATTAGCTTGGAGTGTGGCATACAACAAGTACTTCAAAACAACACCTGCACAGAAGGTTTTATCAGTTCTGCAGTTTCTTACAGCACTCGTAATGCTGTCAGATGTACTATTTGTTCAGGGAATATACAGAAACTTCGGAATACCGGATTCCATGTACACAATTGTTTTCTCAGGGTTGTTGGAGGGTCTTATGTTGTTCAAGGTGCTGCCCTTCAGTGTTCTTGTTGCAAAACTTTGCCCTTCTGGGTGTGAGGGATCACTTATGGCTTTTGTCATGTCTGCACTTGCCCTCGCAACTATCATCAGCGGTTATCTTGGGGTTGCACTTGCTGAATTCATGGGAGTATCTGGAGGTGATTTCTCAGCGCTGCCGACTTGTCTGTTGATTGAGGCTGCATGCACAATGCTACCACTCTT-TTTCTCCTCATTGATAAAAGAGAGGAGAGAAAAGGAGAAGAAAGAAGAATAGAATTCACCTATAGGATTCGATGAGGTTGTACTGGTGCTCGTTATACTTTACAGTCATCTTTGGGATCATATGGATTTGCCGATAGTTCGGTTTCATAATCAGAACATAGCTGGTGGACACAATTTAAAAGACTAGGTTCCTCGAGAGGTTTTCAGTGTTTGTCGAGAATCATGTTCAGTGTAGATGGCATATTTGTACCTATATTTGTGTTACCATTCTTCTATAGATCAAGTCTTGTTTCATGTAACTAGTATTC-TTTTGTGTATGCTAATCTGTTTTTTGTAGATGAAACAATATAAATGTTTTGTGCATCTTAAAAGTGTTGA] [+] EMBL AK100484 [CACGCGCCTACCCGCACGCCGAGCTGTCGCCGCGTGTGCCCCCGCCTCGTTCCATCGCCTTCGCGTCGCGCTGTGCCCACTAAAACAATCCGGCCAGTTAACACTTCACACCCCCGCGCCCTCTCGTCCCCCTTCCTACGTGTCCCCCTCCCTGATCAAGAACGGATCACCGGCTCGGCGCCCCACTCTCTTCTTGGATCGGGGAGCGGGAGAGGGGGAGGAAGAGGCGGCGGATCAGAAGATTTGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGAGGTGGTGTGGGTGGGTGAGTGAGTGAGGAGTGATGGAGAAGGAGAGGAAGATGGAGGGGGAGAGGAGGGTGGAGGCGACGCGGCGGTGGGTGATCGCGGTGGGGTTCTGGGTGCAGGGGTTCCGGCTGTTCCCATGGCTGGGCGTCAACTTCTTCCTCAAGGACGGCATGGGCGTCGCCGCCTCCTCGCTGCAGATCCTCCAGGCGTCCGCCAACCTCCCCATGGTCGCCAAGCCGCTTCTCGGCCTCCTCTCCGACGCCGTCCCCATCCGCGGCCACCGCCGCCTCCCCTACGTCGCCATCGGCGCTCTCTTGCAGGCAATTTCATGGTTAGCAATTGCCCTCTGGCCAGCTATTTCTCTTCCAGTTCTTACCATTTTTCTCCTCTTGAGCAACTTTGGTGCATCCATATGTGAGGTTGCCAATGATGCCATTGTAGCAGAAGCTGGGAAGCAAGCAACCTTGTCCTCAGGGTCAGGTCAGCTTCAATCCTTTGCTTGGATGTTTGGTTCATCTGCTGGCGCTTTAGGAAATCTTGTTGGTGGCATTGCACTCAGTTACTTTTCTCCAAAAATCATGTTTCTGTTTTTTGCAATCCTTCTCGTGCTCCAGTTCTGCACTACTGTGGCTATACCTGAAAGCTCCCTCCAACTCCCAAAGGCAGATACTAATCTATCAGCTGTCTCCAGCGTCCGTAAGCAAATCAAAGAGCTGTCATATGCGCTGTGTATGCCTGAAATATTTTGGTCAGTCATTTGGTTTTCATTGTCCTATGCTGCCATACCATTTCTACTTGGGACCATGTTCTTCTATCAGACTGAAGTGTTAAGACTTGACTCATCAGTTATCGGTTTGTCCAAGGTTTTTGGACAAGTAACTCTATTAGCTTGGAGTGTGGCATACAACAAGTACTTCAAAACAACACCTGCACAGAAGGTTTTATCAGTTCTGCAGTTTCTTACAGCACTCGTAATGCTGTCAGATGTACTATTTGTTCAGGGAATATACAGAAACTTCGGAATACCGGATTCCATGTACACAATTGTTTTCTCAGGGTTGTTGGAGGGTCTTATGTTGTTCAAGGTGCTGCCCTTCAGTGTTCTTGTTGCAAAACTTTGCCCTTCTGGGTGTGAGGGATCACTTATGGCTTTTGTCATGTCTGCACTTGCCCTCGCAACTATCATCAGCGGTTATCTTGGGGTTGCACTTGCTGAATTCATGGGAGTATCTGGAGGTGATTTCTCAGCGCTGCCGACTTGTCTGTTGATTGAGGCTGCATGCACAATGCTACCACTCTT TTTCTCCTCATTGATAAAAGAGAGGAGAGAAAAGGAGAAGAAAGAAGAATAGAATTCACCTATAGGATTCGATGAGGTTGTACTGGTGCTCGTTATACTTTACAGTCATCTTTGGGATCATATGGATTTGCCGATAGTTCGGTTTCATAATCAGAACATAGCTGGTGGACACAATTTAAAAGACTAGGTTCCTCGAGAGGTTTTCAGTGTTTGTCGAGAATCATGTTCAGTGTAGATGGCATATTTGTACCTATATTTGTGTTACCATTCTTCTATAGATCAAGTCTTGTTTCATGTAACTAGTATTC TTTTGTGTATGCTAATCTGTTTTTTGTAGATGAAACAATATAAATGTTTTGTGCATCTTAAAAGTGTT ] [-] EMBL CB679094 [ TATCAGACTGAAGTGTTAAGACTTGACTCATCAGTTATCGGTTTGTCCAAGGTTTTTGGACAAGTAACTCTATTAGCTTGGAGTGTGGCATACAACAAGTACTTCAAAACAACACCTGCACAGAAGGTTTTATCAGTTCTGCAGTTTCTTACAGCACTCGTAATGCTGTCAGATGTACTATTTGTTCAGGGAATATACAGAAACTTCGGAATACCGGATTCCATGTACACAATTGTTTTCTCAGGGTTGTTGGAGGGTCTTATGTTGTTCAAGGTGCTGCCCTTCAGTGTTCTTGTTGCAAAACTTTGCCCTTCTGGGTGTGAGGGATCACTTATGGCTTTTGTCATGTCTGCACTTGCCCTCGCAACTATCATCAGCGGTTATCTTGGGGTTGCACTTGCTGAATTCATGGGAGTATCTGGAGGTGATTTCTCAGCGCTGCCGACTTGTCTGTTGATTGAGGCTGCATGCACAATGCTACCACTCTT TTTCTCCTCATTGATAAAAGAGAGGAGAGAAAAGGAGAAGAAAGAAGAATAGAATTCACCTATAGGATTCGATGAGGTTGTACTGGTGCTCGTTATACTTTACAGTCATCTTTGGGATCATATGGATTTGCCGATAGTTCGGTTTCATAATCAGAACATAGCTGGTGGACACAATTTAAAAGACTAGGTTCCTCGAGAGGTTTTCAGTGTTTGTCGAGAATCATGTTCAGTGTAGATGGCATATTTGTACCTATATTTGTGTTAGCATTCTTC ] [-] EMBL CB679095 [ CGGTTTGTCCAAGGTTTTTGGACAAGTAACTCTATTAGCTGGGAGTGTGGCATACAACAAGTACTTCAAAACAACACCTGCACAGAAGGTTTTATCAGTTCTGCAGTTTCTTACAGCACTCGTAATGCTGTCAGATGTACTATTTGTTCAGGGAATATACAGAAACTTCGGAATACCGGATTCCATGTACACAATTGTTTTCTCAGGGTTGTTGGAGGGTCTTATGTTGTTCAAGGTGCTGCCCTTCAGTGTTCTTGTTGCAAAACTTTGCCCTTCTGGGTGTGAGGGATCACTTATGGCTTTTGTCATGTCTGCACTTGCCCTCGCAACTATCATCAGCGGTTATCTTGGGGTTGCACTTGCTGAATTCATGGGAGTATCTGGAGGTGATTTCTCAGCGCTGCCGACTTGTCTGTTGATTGAGGCTGCATGCACAATGCTACCACTCTT TTTCTCCTCATTGATAAAAGAGAGGAGAGAAAAGGAGAAGAAAGAAGAATAGAATTCACCTATAGGATTCGATGAGGTTGTACTGGTGCTCGTTATACTTTACAGTCATCTTTGGGATCATATGGATTTGCCGATAGTTCGGTTTCATAATCAGAACATAGCTGGTGGACACAATTTAAAAGACTAGGTTCCTCGAGAGGTTTTCAGTGTTTGTCGAGAATCATGTTCAGTGTAGATGGCATATTTGTACCTATATTTGTGTTACCATTCTTCTATAGATCAAGTCTTGTTTCATGTAACTAGTATTCTTTTTGTGTATGCTAATCTGTTTTTTGTAGATGAAACAATATAAATGTTTTGTGCATCTTAAAAaaaagga] [+] EMBL BI801487 [ GCACTTGCCCTCGCAACTATCATCA CGGTTATCTT GGGTTGCACTTGCTGAATTCATGGGAGTATCTGGAGGTGATTTCTCAGCGCTGCCGACTTGTCTGTTGATTGAGGCTGCATGCACAATGCTACCACTCTTGTTTCTCCTCATTGATAAAAGAGAGGAGAGAAAAGGAGAAGAAAGAAGAATAGAATTCACCTATAGGATTCGATGA GTTGTACTGGTGCTCGTTATACTTTACAGTCATCTTTGGGATCATATGGATTTGCCGATAGTTCGGTTTCATAATCAGAACATAGCTGGTGGACACAATAT AAAGACTAGGTTCCTCGAGAGGTTTTCAGTGTTTGTCGAGAATCATGTTCAGTGTAGATGGCATATTTGTACCTATATTTGTGTTACCATTCTTCTATAGATTAAGTCTTGTTTCATGTAAaaaa ] consensusID : consensus_8385#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 220 fasta sequence [ACGAGGCCGACTTGTCTGTNGATTGAAGCTGCATGCACAATGCTACCACTCTTTTTCTCCTCATTGATAAAAGAAAAGGAGACAAAAGGAGAAAAANGANNANTCCATTNCCCCTTTNGGATNCAANAAGGTTTTCCNGNTCCCCNTNNTCCTTNNCATNCNCCTTNGGNNTCNTTTGNATTNNCCAATATTCCGNTTCCNTATCCNAANCTTANTGNTG] [+] EMBL BE228916 [ACGAGGCCGACTTGTCTGTNGATTGAAGCTGCATGCACAATGCTACCACTCTTTTTCTCCTCATTGATAAAAGAAAAGGAGACAAAAGGAGAAAAANGANNANTCCATTNCCCCTTTNGGATNCAANAAGGTTTTCCNGNTCCCCNTNNTCCTTNNCATNCNCCTTNGGNNTCNTTTGNATTNNCCAATATTCCGNTTCCNTATCCNAANCTTANTGNTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8385#0 CACGCGCCTACCCGCACGCCGAGCTGTCGCCGCGTGTGCCCCCGCCTCGTTCCATCGCCT 60 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 TCGCGTCGCGCTGTGCCCACTAAAACAATCCGGCCAGTTAACACTTCACACCCCCGCGCC 120 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 CTCTCGTCCCCCTTCCTACGTGTCCCCCTCCCTGATCAAGAACGGATCACCGGCTCGGCG 180 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 CCCCACTCTCTTCTTGGATCGGGGAGCGGGAGAGGGGGAGGAAGAGGCGGCGGATCAGAA 240 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 GATTTGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGAGGTGGTGTGGGTGGGTGAGTG 300 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 AGTGAGGAGTGATGGAGAAGGAGAGGAAGATGGAGGGGGAGAGGAGGGTGGAGGCGACGC 360 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 GGCGGTGGGTGATCGCGGTGGGGTTCTGGGTGCAGGGGTTCCGGCTGTTCCCATGGCTGG 420 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 GCGTCAACTTCTTCCTCAAGGACGGCATGGGCGTCGCCGCCTCCTCGCTGCAGATCCTCC 480 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 AGGCGTCCGCCAACCTCCCCATGGTCGCCAAGCCGCTTCTCGGCCTCCTCTCCGACGCCG 540 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 TCCCCATCCGCGGCCACCGCCGCCTCCCCTACGTCGCCATCGGCGCTCTCTTGCAGGCAA 600 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 TTTCATGGTTAGCAATTGCCCTCTGGCCAGCTATTTCTCTTCCAGTTCTTACCATTTTTC 660 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 TCCTCTTGAGCAACTTTGGTGCATCCATATGTGAGGTTGCCAATGATGCCATTGTAGCAG 720 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 AAGCTGGGAAGCAAGCAACCTTGTCCTCAGGGTCAGGTCAGCTTCAATCCTTTGCTTGGA 780 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 TGTTTGGTTCATCTGCTGGCGCTTTAGGAAATCTTGTTGGTGGCATTGCACTCAGTTACT 840 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 TTTCTCCAAAAATCATGTTTCTGTTTTTTGCAATCCTTCTCGTGCTCCAGTTCTGCACTA 900 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 CTGTGGCTATACCTGAAAGCTCCCTCCAACTCCCAAAGGCAGATACTAATCTATCAGCTG 960 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 TCTCCAGCGTCCGTAAGCAAATCAAAGAGCTGTCATATGCGCTGTGTATGCCTGAAATAT 1020 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 TTTGGTCAGTCATTTGGTTTTCATTGTCCTATGCTGCCATACCATTTCTACTTGGGACCA 1080 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 TGTTCTTCTATCAGACTGAAGTGTTAAGACTTGACTCATCAGTTATCGGTTTGTCCAAGG 1140 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 TTTTTGGACAAGTAACTCTATTAGCTTGGAGTGTGGCATACAACAAGTACTTCAAAACAA 1200 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 CACCTGCACAGAAGGTTTTATCAGTTCTGCAGTTTCTTACAGCACTCGTAATGCTGTCAG 1260 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 ATGTACTATTTGTTCAGGGAATATACAGAAACTTCGGAATACCGGATTCCATGTACACAA 1320 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 TTGTTTTCTCAGGGTTGTTGGAGGGTCTTATGTTGTTCAAGGTGCTGCCCTTCAGTGTTC 1380 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 TTGTTGCAAAACTTTGCCCTTCTGGGTGTGAGGGATCACTTATGGCTTTTGTCATGTCTG 1440 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 CACTTGCCCTCGCAACTATCATCAGCGGTTATCTTGGGGTTGCACTTGCTGAATTCATGG 1500 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 GAGTATCTGGAGGTGATTTCTCAGCGCTGCCGACTTGTCTGTTGATTGAGGCTGCATGCA 1560 consensus_8385#1 -----------------------ACGAGGCCGACTTGTCTGTNGATTGAAGCTGCATGCA 37 ** ************** ****** ********** consensus_8385#0 CAATGCTACCACTCTTTTTCTCCTCATTGATAAAAGAGA-GGAGAGAAAAGGAGAAGAAA 1619 consensus_8385#1 CAATGCTACCACTCTTTTTCTCCTCATTGATAAAAGAAAAGGAGACAAAAGGAGAAAAAN 97 ************************************* * ***** ********** ** consensus_8385#0 GAAGAATAGAATTCACCTATAGGATTCGATGAGGTTGTACTGGTGCTCGTTATACTTTAC 1679 consensus_8385#1 GANNANTCCATTNCCCCTTTNGGATNCAANAAGGTTTTCCNGNTCCCCNTNNTCCTTNNC 157 ** * * * * * *** * **** * * ***** * * * * * * * * *** * consensus_8385#0 AGTCATCTTTGGGATCATATGGATTTGCCGATAGTTCGGTTTCATAATCAGAACATAGCT 1739 consensus_8385#1 ATNCNCCTTNGGNNTCNTTTGNATTNNCCAATATTCCGNTTCCNTATCCNAANCTTAN-T 216 * * *** ** ** * ** *** ** *** * ** ** * ** * * * ** * consensus_8385#0 GGTGGACACAATTTAAAAGACTAGGTTCCTCGAGAGGTTTTCAGTGTTTGTCGAGAATCA 1799 consensus_8385#1 GNTG-------------------------------------------------------- 220 * ** consensus_8385#0 TGTTCAGTGTAGATGGCATATTTGTACCTATATTTGTGTTACCATTCTTCTATAGATCAA 1859 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 GTCTTGTTTCATGTAACTAGTATTCTTTTGTGTATGCTAATCTGTTTTTTGTAGATGAAA 1919 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 CAATATAAATGTTTTGTGCATCTTAAAAGTGTTGA 1954 consensus_8385#1 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||