These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8392#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1549 fasta sequence [GATGCCGCCGCCGCGACCGCGACCGCCATGGCGTACCGCCGGAAGCCGCAGCCTCCGCAGACGCCGCCGTCCTTGGACCACCACCACCACCACCACACCCCCTCCGTGGGCCCCTCGTCCCCGCCGCAGGACTCCCTCGCCGCGCAGGCCATGCGCGCCTCCGCCGCGCACCGCGACGCCTCCTCCCTCTCCTCGGCCTACTCCTCCTCCTCCGCCTCCGCGGCCGCCGCCGCCGCCGCGGCTCGCCGGGGCCACCACGAGCCCTCCGTCTCCACGCCTTCCCCCGGTTCTTCGGGTTATGAATACACATCCATGAAGAACTTGAATGAGGCTAAGTACGGATTTTGGGGGGCCCTTGCTCGGAAAGCCAAGTCTTTTCTGGACGAGGATGGTTCACCAGGGCAGTATGATTCCCCGGCGAGGCAGCAGCCGTCAAGAGATGCGCCGCCGGTTGGTGTCCAGTATACACGCTCACAACAACCACCGTCTGAAACATGGAAATCCGAGACACCTCCATCTCATAAGAGGTCCGAGGCCATAGCTTCCTCCCTCAACTATATTGGTGGCACAATAAAAAGTGCACTTGAAGAAGGCCGGACGATTGTAGAAAATAAAACAGCCGACATTATTCATGAAACACGCAAATTGAACATAAGAAGAAAAGGAGCTGGCTCAACTACACAAGGAGAAGCTCCACAAAGATTTACTCAAAGGAATCTTCCACAAAATCCACTTGACTACGAAACTCAATTGAAGGCATCTCGCGACGTTGCAAATGCCATGGCAGCAAAAGCAAAGCTGCTATTACGTGAGCTGAAGACTGTGAAGGCCGATTTAGCTTTTGCAAAGGAACGTTGCGCTCAGCTTGAAGATGAAAATAAGATTTTGCGGGAAAGTCACGATAAGGGTGATAACCCTGAAGATGATGATCTGATCCGCCTCCAACTAGAGACACTATTAGCTGAGAAGGCACGGCTCGCACATGAGAATTCGGTGTACGCTCGAGAGAATAGATTCCTACGAGAAATTGTTGAGTACCACCAACTTACTATGCAGGATGTTATATATGTGGATGAAGGCATTGAAGAGGTCACTGAGGTCTACCCTACACAAGTATTACCACCTGCACCTTCTCGGGCTGGTTCAGGCCTTGGTCGCTCTGTAACCCCAGCTACTCCCAAGACTGCCAGCTCATCACCTTCATCAACATCCATTGTTGTACCAGAAACTTGTCCGGTCGTTCCAGCCTCCCCAAAGTCGCTTTCTCGGACTTCATCTAAGCAATAGATCAAGCCCGGCACCACCAACCATGCTGAAGATTAAAAGGTGGTTAGTGGTGCGATACAATCCGGATGCCATTGCAAATGTAAAACCAAAGCTGCGCCGTTGCTGTGCCCTGTATGTTAGTCTCTGATGAGTTGTGTCCTGGAAATGTGCGGACAAATGATGTTCATGCCTGAGATGTTTGTATGATCCGGTGTAACTTACACAGTATTTATAATTTTACTGCATCATCGATTTGGTAAAAAAAAAAAAAANAAAAAANAAN] [+] EMBL AK071944 [GATGCCGCCGCCGCGACCGCGACCGCCATGGCGTACCGCCGGAAGCCGCAGCCTCCGCAGACGCCGCCGTCCTTGGACCACCACCACCACCACCACACCCCCTCCGTGGGCCCCTCGTCCCCGCCGCAGGACTCCCTCGCCGCGCAGGCCATGCGCGCCTCCGCCGCGCACCGCGACGCCTCCTCCCTCTCCTCGGCCTACTCCTCCTCCTCCGCCTCCGCGGCCGCCGCCGCCGCCGCGGCTCGCCGGGGCCACCACGAGCCCTCCGTCTCCACGCCTTCCCCCGGTTCTTCGGGTTATGAATACACATCCATGAAGAACTTGAATGAGGCTAAGTACGGATTTTGGGGGGCCCTTGCTCGGAAAGCCAAGTCTTTTCTGGACGAGGATGGTTCACCAGGGCAGTATGATTCCCCGGCGAGGCAGCAGCCGTCAAGAGATGCGCCGCCGGTTGGTGTCCAGTATACACGCTCACAACAACCACCGTCTGAAACATGGAAATCCGAGACACCTCCATCTCATAAGAGGTCCGAGGCCATAGCTTCCTCCCTCAACTATATTGGTGGCACAATAAAAAGTGCACTTGAAGAAGGCCGGACGATTGTAGAAAATAAAACAGCCGACATTATTCATGAAACACGCAAATTGAACATAAGAAGAAAAGGAGCTGGCTCAACTACACAAGGAGAAGCTCCACAAAGATTTACTCAAAGGAATCTTCCACAAAATCCACTTGACTACGAAACTCAATTGAAGGCATCTCGCGACGTTGCAAATGCCATGGCAGCAAAAGCAAAGCTGCTATTACGTGAGCTGAAGACTGTGAAGGCCGATTTAGCTTTTGCAAAGGAACGTTGCGCTCAGCTTGAAGATGAAAATAAGATTTTGCGGGAAAGTCACGATAAGGGTGATAACCCTGAAGATGATGATCTGATCCGCCTCCAACTAGAGACACTATTAGCTGAGAAGGCACGGCTCGCACATGAGAATTCGGTGTACGCTCGAGAGAATAGATTCCTACGAGAAATTGTTGAGTACCACCAACTTACTATGCAGGATGTTATATATGTGGATGAAGGCATTGAAGAGGTCACTGAGGTCTACCCTACACAAGTATTACCACCTGCACCTTCTCGGGCTGGTTCAGGCCTTGGTCGCTCTGTAACCCCAGCTACTCCCAAGACTGCCAGCTCATCACCTTCATCAACATCCATTGTTGTACCAGAAACTTGTCCGGTCGTTCCAGCCTCCCCAAAGTCGCTTTCTCGGACTTCATCTAAGCAATAGATCAAGCCCGGCACCACCAACCATGCTGAAGATTAAAAGGTGGTTAGTGGTGCGATACAATCCGGATGCCATTGCAAATGTAAAACCAAAGCTGCGCCGTTGCTGTGCCCTGTATGTTAGTCTCTGATGAGTTGTGTCCTGGAAATGTGCGGACAAATGATGTTCATGCCTGAGATGTTTGTATGATCCGGTGTAACTTACACAGTATTTATAATTTTACTGCATCA ] [+] EMBL AK105270 [ CGCCGCCGCGACCGCGACCGCCATGGCGTACCGCCGGAAGCCGCAGCCTCCGCAGACGCCGCCGTCCTTGGACCACCACCACCACCACCACACCCCCTCCGTGGGCCCCTCGTCCCCGCCGCAGGACTCCCTCGCCGCGCAGGCCATGCGCGCCTCCGCCGCGCACCGCGACGCCTCCTCCCTCTCCTCGGCCTACTCCTCCTCCTCCGCCTCCGCGGCCGCCGCCGCCGCCGCGGCTCGCCGGGGCCACCACGAGCCCTCCGTCTCCACGCCTTCCCCCGGTTCTTCGGGTTATGAATACACATCCATGAAGAACTTGAATGAGGCTAAGTACGGATTTTGGGGGGCCCTTGCTCGGAAAGCCAAGTCTTTTCTGGACGAGGATGGTTCACCAGGGCAGTATGATTCCCCGGCGAGGCAGCAGCCGTCAAGAGATGCGCCGCCGGTTGGTGTCCAGTATACACGCTCACAACAACCACCGTCTGAAACATGGAAATCCGAGACACCTCCATCTCATAAGAGGTCCGAGGCCATAGCTTCCTCCCTCAACTATATTGGTGGCACAATAAAAAGTGCACTTGAAGAAGGCCGGACGATTGTAGAAAATAAAACAGCCGACATTATTCATGAAACACGCAAATTGAACATAAGAAGAAAAGGAGCTGGCTCAACTACACAAGGAGAAGCTCCACAAAGATTTACTCAAAGGAATCTTCCACAAAATCCACTTGACTACGAAACTCAATTGAAGGCATCTCGCGACGTTGCAAATGCCATGGCAGCAAAAGCAAAGCTGCTATTACGTGAGCTGAAGACTGTGAAGGCCGATTTAGCTTTTGCAAAGGAACGTTGCGCTCAGCTTGAAGATGAAAATAAGATTTTGCGGGAAAGTCACGATAAGGGTGATAACCCTGAAGATGATGATCTGATCCGCCTCCAACTAGAGACACTATTAGCTGAGAAGGCACGGCTCGCACATGAGAATTCGGTGTACGCTCGAGAGAATAGATTCCTACGAGAAATTGTTGAGTACCACCAACTTACTATGCAGGATGTTATATATGTGGATGAAGGCATTGAAGAGGTCACTGAGGTCTACCCTACACAAGTATTACCACCTGCACCTTCTCGGGCTGGTTCAGGCCTTGGTCGCTCTGTAACCCCAGCTACTCCCAAGACTGCCAGCTCATCACCTTCATCAACATCCATTGTTGTACCAGAAACTTGTCCGGTCGTTCCAGCCTCCCCAAAGTCGCTTTCTCGGACTTCATCTAAGCAATAGATCAAGCCCGGCACCACCAACCATGCTGAAGATTAAAAGGTGGTTAGTGGTGCGATACAATCCGGATGCCATTGCAAATGTAAAACCAAAGCTGCGCCGTTGCTGTGCCCTGTATGTTAGTCTCTGATGAGTTGTGTCCTGGAAATGTGCGGACAAATGATGTTCATGCCTGAGATGTTTGTATGATCCGGTGTAACTTACACAGTATTTATAATTTTACTGCATCA ] [+] EMBL CA764661 [ aaggggGGGAAAGT NCGATAAGGGTGATAACCCTGAAGATGATGATCTGATCCGCCTCCAACTAGAGACACTATTAGCTGAGAAGGCACGGCTCGCACATGAGAATTCGGTGTACGCTCGAGAGAATAGATTCCTACGAGAAATTGTTGAGTACCACCAACTTACTATGCAGGATGTCATATATGTGGATGAAGGCATTGAAGAGGTCACTGAGGTCTACCCTACACAAGTATTACCACCTGCACCTTCTCGGGCTGGTTCAGGCCTTGGTCGCTCTGTAACCCCAGCTACTCCCAAGACTGCCAGCTCATCACCTTCATCAACATCCATTGTTGTACCAGAAACTTGTCCGGTCGTTCCAGCCTCCCCAAAGTCGCTTTCTCGGACTTCATCTAAGCAACAGATCAAGCCCGGCACCACCAACCATGCTGAAGATTAAAAGGTGGTTAGTGGTGCGATACAATCCGGATGCCATTGCAAATGTAAAACCAAAGCTGCGCCGTTGCTGTGCCCTGTATGTTAGTCTCTGATGAGTTGTGTCCTGGAAATGTGCGGACAAATGATGTTCATGCCTGAGATGNTTGTATGATCCGGTGTAACTTACACAGTATTTATAATTTTACTGCATCATC ] [+] EMBL AU093584 [ ATGCTGAAGATTAAAAGGTGGTTAGTGGTGCGATACAATCCGGATGCCATTGCAAATGTAAAACCAAAGCTGCGCCGTTGCTGTGCCCTGTATGTTAGTCTCTGATGAGTTGTGTCCTGGAAATGTGCGGACAAATGATGTTCATGCCTGAAATGTTTGTATGATCCGGTGTAACTTACACAGTATTTATAATTTTNCTGCATCATCGATTTGGTAAAAAAAAAAAAAANAAAAAANAAN] consensusID : consensus_8392#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 373 fasta sequence [CTCNCNCNGGNCGAGGCAGCAGCCGTNCAATCATGTNCGCCGCCGGTTGGTGTCCAGTATACACGCTCACAACAACCACCGTCTGAAACATGGAAATCCGAGACACCTCCATCTCATAAGAGGTCCGAGGCCATAGCTTCCTCCCTCAACTATATTGGTGGCACAATAAAAAGTGCACTTGAAGAAGGCCGGACGATTGTAGAAAATAAAACAGCCGACATTATTCATGAAACACGCAAATTGAACATAAGAAGAAAAGGAGCTGGCTCAACTACACAAGGAGAAGCTCCACAAAGATTTACTCAAAGGAATCTTCCACAAAATCCACTTGACTACGGAACTCAATTGAAGGCATCTCGCGACGTTGCAAATG] [+] EMBL OSC111051 [CTCNCNCNGGNCGAGGCAGCAGCCGTNCAATCATGTNCGCCGCCGGTTGGTGTCCAGTATACACGCTCACAACAACCACCGTCTGAAACATGGAAATCCGAGACACCTCCATCTCATAAGAGGTCCGAGGCCATAGCTTCCTCCCTCAACTATATTGGTGGCACAATAAAAAGTGCACTTGAAGAAGGCCGGACGATTGTAGAAAATAAAACAGCCGACATTATTCATGAAACACGCAAATTGAACATAAGAAGAAAAGGAGCTGGCTCAACTACACAAGGAGAAGCTCCACAAAGATTTACTCAAAGGAATCTTCCACAAAATCCACTTGACTACGGAACTCAATTGAAGGCATCTCGCGACGTTGCAAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8392#0 GATGCCGCCGCCGCGACCGCGACCGCCATGGCGTACCGCCGGAAGCCGCAGCCTCCGCAG 60 consensus_8392#1 ------------------------------------------------------------ consensus_8392#0 ACGCCGCCGTCCTTGGACCACCACCACCACCACCACACCCCCTCCGTGGGCCCCTCGTCC 120 consensus_8392#1 ------------------------------------------------------------ consensus_8392#0 CCGCCGCAGGACTCCCTCGCCGCGCAGGCCATGCGCGCCTCCGCCGCGCACCGCGACGCC 180 consensus_8392#1 ------------------------------------------------------------ consensus_8392#0 TCCTCCCTCTCCTCGGCCTACTCCTCCTCCTCCGCCTCCGCGGCCGCCGCCGCCGCCGCG 240 consensus_8392#1 ------------------------------------------------------------ consensus_8392#0 GCTCGCCGGGGCCACCACGAGCCCTCCGTCTCCACGCCTTCCCCCGGTTCTTCGGGTTAT 300 consensus_8392#1 ------------------------------------------------------------ consensus_8392#0 GAATACACATCCATGAAGAACTTGAATGAGGCTAAGTACGGATTTTGGGGGGCCCTTGCT 360 consensus_8392#1 ------------------------------------------------------------ consensus_8392#0 CGGAAAGCCAAGTCTTTTCTGGACGAGGATGGTTCACCAGGGCAGTATGATTCCCCGGCG 420 consensus_8392#1 -----------------------------------------------CTCNCNCNGGNCG 13 * * ** consensus_8392#0 AGGCAGCAGCCGTCAAG--AGATGCGCCGCCGGTTGGTGTCCAGTATACACGCTCACAAC 478 consensus_8392#1 AGGCAGCAGCCGTNCAATCATGTNCGCCGCCGGTTGGTGTCCAGTATACACGCTCACAAC 73 ************* * * * ************************************ consensus_8392#0 AACCACCGTCTGAAACATGGAAATCCGAGACACCTCCATCTCATAAGAGGTCCGAGGCCA 538 consensus_8392#1 AACCACCGTCTGAAACATGGAAATCCGAGACACCTCCATCTCATAAGAGGTCCGAGGCCA 133 ************************************************************ consensus_8392#0 TAGCTTCCTCCCTCAACTATATTGGTGGCACAATAAAAAGTGCACTTGAAGAAGGCCGGA 598 consensus_8392#1 TAGCTTCCTCCCTCAACTATATTGGTGGCACAATAAAAAGTGCACTTGAAGAAGGCCGGA 193 ************************************************************ consensus_8392#0 CGATTGTAGAAAATAAAACAGCCGACATTATTCATGAAACACGCAAATTGAACATAAGAA 658 consensus_8392#1 CGATTGTAGAAAATAAAACAGCCGACATTATTCATGAAACACGCAAATTGAACATAAGAA 253 ************************************************************ consensus_8392#0 GAAAAGGAGCTGGCTCAACTACACAAGGAGAAGCTCCACAAAGATTTACTCAAAGGAATC 718 consensus_8392#1 GAAAAGGAGCTGGCTCAACTACACAAGGAGAAGCTCCACAAAGATTTACTCAAAGGAATC 313 ************************************************************ consensus_8392#0 TTCCACAAAATCCACTTGACTACGAAACTCAATTGAAGGCATCTCGCGACGTTGCAAATG 778 consensus_8392#1 TTCCACAAAATCCACTTGACTACGGAACTCAATTGAAGGCATCTCGCGACGTTGCAAATG 373 ************************ *********************************** consensus_8392#0 CCATGGCAGCAAAAGCAAAGCTGCTATTACGTGAGCTGAAGACTGTGAAGGCCGATTTAG 838 consensus_8392#1 ------------------------------------------------------------ consensus_8392#0 CTTTTGCAAAGGAACGTTGCGCTCAGCTTGAAGATGAAAATAAGATTTTGCGGGAAAGTC 898 consensus_8392#1 ------------------------------------------------------------ consensus_8392#0 ACGATAAGGGTGATAACCCTGAAGATGATGATCTGATCCGCCTCCAACTAGAGACACTAT 958 consensus_8392#1 ------------------------------------------------------------ consensus_8392#0 TAGCTGAGAAGGCACGGCTCGCACATGAGAATTCGGTGTACGCTCGAGAGAATAGATTCC 1018 consensus_8392#1 ------------------------------------------------------------ consensus_8392#0 TACGAGAAATTGTTGAGTACCACCAACTTACTATGCAGGATGTTATATATGTGGATGAAG 1078 consensus_8392#1 ------------------------------------------------------------ consensus_8392#0 GCATTGAAGAGGTCACTGAGGTCTACCCTACACAAGTATTACCACCTGCACCTTCTCGGG 1138 consensus_8392#1 ------------------------------------------------------------ consensus_8392#0 CTGGTTCAGGCCTTGGTCGCTCTGTAACCCCAGCTACTCCCAAGACTGCCAGCTCATCAC 1198 consensus_8392#1 ------------------------------------------------------------ consensus_8392#0 CTTCATCAACATCCATTGTTGTACCAGAAACTTGTCCGGTCGTTCCAGCCTCCCCAAAGT 1258 consensus_8392#1 ------------------------------------------------------------ consensus_8392#0 CGCTTTCTCGGACTTCATCTAAGCAATAGATCAAGCCCGGCACCACCAACCATGCTGAAG 1318 consensus_8392#1 ------------------------------------------------------------ consensus_8392#0 ATTAAAAGGTGGTTAGTGGTGCGATACAATCCGGATGCCATTGCAAATGTAAAACCAAAG 1378 consensus_8392#1 ------------------------------------------------------------ consensus_8392#0 CTGCGCCGTTGCTGTGCCCTGTATGTTAGTCTCTGATGAGTTGTGTCCTGGAAATGTGCG 1438 consensus_8392#1 ------------------------------------------------------------ consensus_8392#0 GACAAATGATGTTCATGCCTGAGATGTTTGTATGATCCGGTGTAACTTACACAGTATTTA 1498 consensus_8392#1 ------------------------------------------------------------ consensus_8392#0 TAATTTTACTGCATCATCGATTTGGTAAAAAAAAAAAAAANAAAAAANAAN 1549 consensus_8392#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||