These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_840#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [AATCCACGCGCCCCACCTCGCCGCCGTCGCCGCCGCCGCGATGGACGCGGAGGCGTCGGAGCTGCGGGCGAGGCTCGCCGCCGCGGTGCACGCGCTCAATCACGGCGGCGGCGGGCACCACGACCCGTCGGCGCGGCTCGCGGCCAACCAGTGGCTCCTCGCGCTGCAGCGGTCGCCGCAGGCGTGGGGGGTGGCNACCTCGCTGCTGGCCGCGCCTCCCCCGGGTCACCCGCCCCCGTCCGGCGACCTGTTCTTCTTCGCCGCGAAGATGCTCCGTGAGGAAGAGCCAATGCCCCCCCTCCGCCGCCGGTGGTTGTCTCATGCCGCATGAGGTGGCCCACCTCCTATAGGTGTTGCTCATGCCGACGGACAAGATCAGCCTCTTTTCCGCTTGGTTGTTCACGCACATATCACTGGCATTTCCTTCGTGTGTCTATCGAGGCGAGTGCTGGAATGACAACACAACTCTCTTTGATGTTGCCCCCTCCCTGACTTCCACAATAAATCTGCTCGCTGTGGTTCGAATTACAGGTCTTGCCCAATATCAGGATGGAAACTCCCAACTAACACAGCCCTGGCTTTTACTTCCGTATCCGCGCACATTGTCACCCTGCTTCGCCT] [+] EMBL CA754954 [AATCCACGCGCCCCACCTCGCCGCCGTCGCCGCCGCCGCGATGGACGCGGAGGCGTCGGAGCTGCGGGCGAGGCTCGCCGCCGCGGTGCACGCGCTCAATCACGGCGGCGGCGGGCACCACGACCCGTCGGCGCGGCTCGCGGCCAACCAGTGGCTCCTCGCGCTGCAGCGGTCGCCGCAGGCGTGGGGGGTGGCNACCTCGCTGCTGGCCGCGCCTCCCCCGGGTCACCCGCCCCCGTCCGGCGACCTGTTCTTCTTCGCCGCGAAGATGCTCCGTGAGGAAGAGCCAATGCCCCCCCTCCGCCGCCGGTGGTTGTCTCATGCCGCATGAGGTGGCCCACCTCCTATAGGTGTTGCTCATGCCGACGGACAAGATCAGCCTCTTTTCCGCTTGGTTGTTCACGCACATATCACTGGCATTTCCTTCGTGTGTCTATCGAGGCGAGTGCTGGAATGACAACACAACTCTCTTTGATGTTGCCCCCTCCCTGACTTCCACAATAAATCTGCTCGCTGTGGTTCGAATTACAGGTCTTGCCCAATATCAGGATGGAAACTCCCAACTAACACAGCCCTGGCTTTTACTTCCGTATCCGCGCACATTGTCACCCTGCTTCGCCT] consensusID : consensus_840#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [AATCCACGCGCCCCACCTCGCCGCCGTCGCCGCCGCCGCGATGGACGCGGAGGCGTCGGAGCTGCGGGCGAGGCTCGCCGCCGCGGTGCACGCGCTCAATCACGGCGGCGGCGGGCACCACGACCCGTCGGCGCGGCTCGCGGCCAACCAGTGGCTCCTCGCGCTGCAGCGGTCGCCGCAGGCGTGGGGGGTGGCGACCTCGCTGCTGGCCGCGCCGCCCCCGGGCCACCCGCCCCCGCCCGCCGACCTGCTCTTCTTCGCCGCGCAGATGCTCCGGAGGAAGATCCAGTGCCCCCCCGCCGCCGCCGGTGGTTGCCCCACGCCGCAAGAGGTTGCCCACCTCCTCGACGCGCTCCTCCTCGCGGCGGGGCGGGTCTGCCTCGGCCCGCCGCGGCTGCTCACGCAGATCTCCCTGGTGCTCGCGGCGTTGGAGCTCCGCGTCGAGTGGGGGGTGGACGGCCTCTTCGAGGGGATGGGGGTCCTCCCCTACCCCGCCCGGATGGAGCTGCTCACTGTGCTTCCCAATCAAGTCTGGAATGGACAGAACGTTCGAACCTGGGGTGGAATCCGACTTTTCCTTCAATGTCTACCGCTGAGTTCTTGACGATAGCGC] [+] EMBL CA754949 [AATCCACGCGCCCCACCTCGCCGCCGTCGCCGCCGCCGCGATGGACGCGGAGGCGTCGGAGCTGCGGGCGAGGCTCGCCGCCGCGGTGCACGCGCTCAATCACGGCGGCGGCGGGCACCACGACCCGTCGGCGCGGCTCGCGGCCAACCAGTGGCTCCTCGCGCTGCAGCGGTCGCCGCAGGCGTGGGGGGTGGCGACCTCGCTGCTGGCCGCGCCGCCCCCGGGCCACCCGCCCCCGCCCGCCGACCTGCTCTTCTTCGCCGCGCAGATGCTCCGGAGGAAGATCCAGTGCCCCCCCGCCGCCGCCGGTGGTTGCCCCACGCCGCAAGAGGTTGCCCACCTCCTCGACGCGCTCCTCCTCGCGGCGGGGCGGGTCTGCCTCGGCCCGCCGCGGCTGCTCACGCAGATCTCCCTGGTGCTCGCGGCGTTGGAGCTCCGCGTCGAGTGGGGGGTGGACGGCCTCTTCGAGGGGATGGGGGTCCTCCCCTACCCCGCCCGGATGGAGCTGCTCACTGTGCTTCCCAATCAAGTCTGGAATGGACAGAACGTTCGAACCTGGGGTGGAATCCGACTTTTCCTTCAATGTCTACCGCTGAGTTCTTGACGATAGCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_840#0 AATCCACGCGCCCCACCTCGCCGCCGTCGCCGCCGCCGCGATGGACGCGGAGGCGTCGGA 60 consensus_840#1 AATCCACGCGCCCCACCTCGCCGCCGTCGCCGCCGCCGCGATGGACGCGGAGGCGTCGGA 60 ************************************************************ consensus_840#0 GCTGCGGGCGAGGCTCGCCGCCGCGGTGCACGCGCTCAATCACGGCGGCGGCGGGCACCA 120 consensus_840#1 GCTGCGGGCGAGGCTCGCCGCCGCGGTGCACGCGCTCAATCACGGCGGCGGCGGGCACCA 120 ************************************************************ consensus_840#0 CGACCCGTCGGCGCGGCTCGCGGCCAACCAGTGGCTCCTCGCGCTGCAGCGGTCGCCGCA 180 consensus_840#1 CGACCCGTCGGCGCGGCTCGCGGCCAACCAGTGGCTCCTCGCGCTGCAGCGGTCGCCGCA 180 ************************************************************ consensus_840#0 GGCGTGGGGGGTGGCNACCTCGCTGCTGGCCGCGCCTCCCCCGGGTCACCCGCCCCCGTC 240 consensus_840#1 GGCGTGGGGGGTGGCGACCTCGCTGCTGGCCGCGCCGCCCCCGGGCCACCCGCCCCCGCC 240 *************** ******************** ******** ************ * consensus_840#0 CGGCGACCTGTTCTTCTTCGCCGCGAAGATGCTCCGTGAGGAAGAGCCAATGCCCCCCCT 300 consensus_840#1 CGCCGACCTGCTCTTCTTCGCCGCGCAGATGCTCCG-GAGGAAGATCCAGTGCCCCCCCG 299 ** ******* ************** ********** ******** *** ********* consensus_840#0 CCGCCGCCGGTGGTTGTCTCATGCCGCATGAGGTGGCCCACCTCCTATAGGTGTTGCTCA 360 consensus_840#1 CCGCCGCCGGTGGTTGCCCCACGCCGCAAGAGGTTGCCCACCTCCTCGACGCGCTCCTCC 359 **************** * ** ****** ***** *********** * * * * *** consensus_840#0 TGCCGACGGACAAGATCAGCCTCTTTTCCGCTTGGTTGTTCACGCACATATCACTGGCAT 420 consensus_840#1 TCGCGGCGGGGCGGGTCTGCCTCGGCCCGCCGCGGCTGCTCACGCAGATCTCCCTGGTGC 419 * ** *** * ** ***** * * ** ** ******* ** ** **** consensus_840#0 TTCCTTCGTGTGTCTATCGAGGCGAGTGCTGGAATGACAACACAACTCTCTTTGATGTTG 480 consensus_840#1 TCGCGGCGTTGGAGCTCCGCGTCGAGTGGGGGGTGGACGGC-CTCTTCGAGGGGATGGGG 478 * * *** * ** * ****** ** *** * * ** **** * consensus_840#0 CCCCCTCCCTGACTTCCACA-ATAAATCTGCTCGCTGTGGTTCGAATTACAGGTCTTGCC 539 consensus_840#1 GTCCTCCCCTACCCCGCCCGGATGGAGCTGCTCACTGTGCTTCCCAAT-CAAGTCTGG-- 535 ** **** * * * ** * ****** ***** *** * * ** **** * consensus_840#0 CAATATCAGGATGGAAACTCCCAAC-TAACACAGC-CCTGGCTTTTACTTCCGTATCCGC 597 consensus_840#1 -AAT----GGACAGAACGTTCGAACCTGGGGTGGAATCCGACTTTTCCTTCAATGTCTAC 590 *** *** *** * * *** * * * * ***** **** * ** * consensus_840#0 -GCACATTGTCACCCTGCTTCGCCT 621 consensus_840#1 CGCTGAGTTCTTGACGATAGCGC-- 613 ** * * * *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||