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Oryza sativa
cluster # 8414 cluster # 8414       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8414#0 length = 1963 sequences # 3  
consensus_8414#1 length = 859 sequences # 1  
consensus_8414#2 length = 470 sequences # 1  

consensusID : consensus_8414#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1963
fasta sequence
                              [CCCCACTCCGTCCACCCCGCCGCACCGACACTCTCCTCCGCCATGGATCGCGACCCCTCCGTCTCCGACGAGGACGACGACCTCGAGACCCTCGTCCCGCAGAACCACGTCAAGCCGCCCTCCTCCTCCTTCCACGTCGCCGGCCTCCGCGCCGCGGTCCCTCCCTCCGCCGCCTCGCTCGGCCGCGTCCTCTGGTCCCGCCGCTACCTCCTCCTCTTCGTCGCCCTCCCCGTCCTCTTCCTCGTGCTCTTCGTATCCCTTGGCGGCGCGTCCTCCCTTCGCCTGCCCGCCTCCATCCGCCTCCCCTCCGCCGCCGCTCCCGCCGCCGACCCCGCGGCGTCCCGGATGCGCGACGCCGAGCTCCGCGCGCTCTACCTCCTCCGCTCGCAGCGCTCGGGCCTCCTCGCCCTCTTCAACCGTACGGCAGCACCCACCAACGGCAGCAGCTCGGGCTCGAACGCTGTCTCGTACGCCGATCTCCACGACGCGCTCCTCGGCCAGATCAAGATCAACCGCGAGGTCCAGGCGGCGCTCCTCTCCGCGCACCGCACTGGCGCTGCGGGCAATGCGACGGAGGATGGGTTGGATCTTGATCTGCCGGCTGACGGGTGCAGGAGGAGGGAATTGCCGTCCAACCGGCGGACCATAGAGTGGAACCCCAAGAAAGATCGATTCCTGTTCGCCATCTGCGTCTCCGGGCAAATGTCCAACCACTTGATTTGCTTGGAGAAGCACATGTTCTTCGCGGCGCTGCTTGGCCGGATCTTGGTGGTGCCTAGCCAGAAGCTGGATTATCAGTACGACCGGGTGCTTGATATCAACCACATTAATGATTGCATTGGAAGGAAGGTTGTAATTACCTATGAGGAATTCACAGAGAAGAGGAAGAAAGTGAGCATTGATCAGTTCATATGTTACGCGGCATCACCCCCTTGTTTCATTGATGAGGATCATGTTAAGAAGTTGAAGGGATTGGGGATTTCACTGGGAAAGATCCAGGCAGCTTGGCCAGAGGATGCGAAGCTGA-AGGAGCCAAAGAAGAGATTTGTGGAGGATATCATGCCAAAGTTTACCACGGATGCTGAGGTGCTCGCGATCGGTGACATGTTCTATGCTGATGTTGAGGAAGAGTGGGTGATGCAGCCTGGTGGCCCATTGGCTCACAAGTGCAATACTTTGATCCAGCCAAGTAGGCTTATTATGCTCACTGCGCAACGCTTTGTTCAGACCTTCTTGGGGGGCAACTACATTGCTTTGCATTTTCGGCGACATGGCTTCCTGAAGTTCTGTAATGTGAAGAAAGAGAGCTGCTTCTTCCCTATCCCTCAGGCAGCAGAATGCATTCTTCGAATCGTTGAGAAAGCTAACGCCCCAGTCATATATCTGTCTACTGATGCTGCCGAGAGTGAGACAAGTCTCCTGCAATCCTTGGTTGTGTTCAATGACAGGCAAGTCCCTCTTGTGAAAAGGCCAGAGCACCACAACTCTGAGAAATGGGATGCCTTGTTATACAGAAATCACATGGGTGGAGACAATCAGGTTGAGGCCATGCTCGACAAGACGATCTGTGCGCTGTCGAACGTTTTCATAGGTGCATCAGGCTCAACCTTCACAGAGGACATCCTGCGTCTACGGAGAGGCTGGGGTTCTGCGTCCCACTGCGACGAATACCTCTGCCAGGGTGAGCTACCCAACTTCATAGCGGAGCTAGACTGAGAAAATGACATCCTAGAAGAAGAATTGACAGCTACATCCCCCTTTTTTTCCCCACTACGATCTGGTGGCATGATACACATTCTGTAAATTGGCGTGTACATCCTAGTGTAAAAGAGCGATGATATTTGTTGTACCGGTACCCCCATTGATTTGTTCGGTGTTGTTACACGGTTAGGCAATAGAAAGAGTTTGGTTTTTGCGCTTGCTCAGTGTTCATACTCTGTTATACTGTGAGACAGCTTCATAG]

[+] EMBL AK109147             [CCCCACTCCGTCCACCCCGCCGCACCGACACTCTCCTCCGCCATGGATCGCGACCCCTCCGTCTCCGACGAGGACGACGACCTCGAGACCCTCGTCCCGCAGAACCACGTCAAGCCGCCCTCCTCCTCCTTCCACGTCGCCGGCCTCCGCGCCGCGGTCCCTCCCTCCGCCGCCTCGCTCGGCCGCGTCCTCTGGTCCCGCCGCTACCTCCTCCTCTTCGTCGCCCTCCCCGTCCTCTTCCTCGTGCTCTTCGTATCCCTTGGCGGCGCGTCCTCCCTTCGCCTGCCCGCCTCCATCCGCCTCCCCTCCGCCGCCGCTCCCGCCGCCGACCCCGCGGCGTCCCGGATGCGCGACGCCGAGCTCCGCGCGCTCTACCTCCTCCGCTCGCAGCGCTCGGGCCTCCTCGCCCTCTTCAACCGTACGGCAGCACCCACCAACGGCAGCAGCTCGGGCTCGAACGCTGTCTCGTACGCCGATCTCCACGACGCGCTCCTCGGCCAGATCAAGATCAACCGCGAGGTCCAGGCGGCGCTCCTCTCCGCGCACCGCACTGGCGCTGCGGGCAATGCGACGGAGGATGGGTTGGATCTTGATCTGCCGGCTGACGGGTGCAGGAGGAGGGAATTGCCGTCCAACCGGCGGACCATAGAGTGGAACCCCAAGAAAGATCGATTCCTGTTCGCCATCTGCGTCTCCGGGCAAATGTCCAACCACTTGATTTGCTTGGAGAAGCACATGTTCTTCGCGGCGCTGCTTGGCCGGATCTTGGTGGTGCCTAGCCAGAAGCTGGATTATCAGTACGACCGGGTGCTTGATATCAACCACATTAATGATTGCATTGGAAGGAAGGTTGTAATTACCTATGAGGAATTCACAGAGAAGAGGAAGAAAGTGAGCATTGATCAGTTCATATGTTACGCGGCATCACCCCCTTGTTTCATTGATGAGGATCATGTTAAGAAGTTGAAGGGATTGGGGATTTCACTGGGAAAGATCCAGGCAGCTTGGCCAGAGGATGCGAAGCTGA AGGAGCCAAAGAAGAGATTTGTGGAGGATATCATGCCAAAGTTTACCACGGATGCTGAGGTGCTCGCGATCGGTGACATGTTCTATGCTGATGTTGAGGAAGAGTGGGTGATGCAGCCTGGTGGCCCATTGGCTCACAAGTGCAATACTTTGATCCAGCCAAGTAGGCTTATTATGCTCACTGCGCAACGCTTTGTTCAGACCTCCTTGGGGGGCAACTACATTGCTTTGCATTTTCGGCGACATGGCTTCCTGAAGTTCTGTAATGTGAAGAAAGAGAGCTGCTTCTTCCCTATCCCTCAGGCAGCAGAATGCATTCTTCGAATCGTTGAGAAAGCTAACGCCCCAGTCATATATCTGTCTACTGATGCTGCCGAGAGTGAGACAAGTCTCCTGCAATCCTTGGTTGTGTTCAATGACAGGCAAGTCCCTCTTGTGAAAAGGCCAGAGCACCACAACTCTGAGAAATGGGATGCCTTGTTATACAGAAATCACATGGGTGGAGACAATCAGGTTGAGGCCATGCTCGACAAGACGATCTGTGCGCTGTCGAACGTTTTCATAGGTGCATCAGGCTCAACCTTCACAGAGGACATCCTGCGTCTACGGAGAGGCTGGGGTTCTGCGTCCCACTGCGACGAATACCTCTGCCAGGGTGAGCTACCCAACTTCATAGCGGAGCTAGACTGAGAAAATGACATCCTAGAAGAAGAATTGACAGCTACATCCCCCTTTTTTTCCCCACTACGATCTGGTGGCATGATACACATTCTGTAAATTGGCGTGTACATCCTAGTGTAAAAGAGCGATGATATTTGTTGTACCGGTACCCCCATTGATTTGTTCGGTGTTGTTACACGGTTAGGCAATAGAAAGAGTTTGGTTTTTGCGCTTGCTCAGTGTTCATACTCTGTTATACTGTGAGACAGCTTCATAG]
[+] EMBL AK072023             [CCCCACTCCGTCCACCCCGCCGCACCGACACTCTCCTCCGCCATGGATCGCGACCCCTCCGTCTCCGACGAGGACGACGACCTCGAGACCCTCGTCCCGCAGAACCACGTCAAGCCGCCCTCCTCCTCCTTCCACGTCGCCGGCCTCCGCGCCGCGGTCCCTCCCTCCGCCGCCTCGCTCGGCCGCGTCCTCTGGTCCCGCCGCTACCTCCTCCTCTTCGTCGCCCTCCCCGTCCTCTTCCTCGTGCTCTTCGTATCCCTTGGCGGCGCGTCCTCCCTTCGCCTGCCCGCCTCCATCCGCCTCCCCTCCGCCGCCGCTCCCGCCGCCGACCCCGCGGCGTCCCGGATGCGCGACGCCGAGCTCCGCGCGCTCTACCTCCTCCGCTCGCAGCGCTCGGGCCTCCTCGCCCTCTTCAACCGTACGGCAGCACCCACCAACGGCAGCAGCTCGGGCTCGAACGCTGTCTCGTACGCCGATCTCCACGACGCGCTCCTCGGCCAGATCAAGATCAACCGCGAGATCCAGGCGGCGCTCCTCTCCGCGCACCGCACTGGCGCTGCGGGCAATGCGACGGAGGATGGGTTGGATCTTGATCTGCCGGCTGACGGGTGCAGGAGGAGGGAATTGCCGTCCAACCGGCGGACCATAGAGTGGAACCCCAAGAAAGATCGATTCCTGTTCGCCATCTGCGTCTCCGGGCAAATGTCCAACCACTTGATTTGCTTGGAGAAGCACATGTTCTTCGCGGCGCTGCTTGGCCGGATCTTGGTGGTGCCTAGCCAGAAGCTGGATTATCAGTACGACCGGGTGCTTGATATCAACCACATTAATGATTGCATTGGAAGGAAGGTTGTAATTACCTATGAGGAATTCACAGAGAAGAGGAAGAAAGTGAGCATTGATCAGTTCATATGTTACGCGGCATCACCCCCTTGTTTCATTGATGAGGATCATGTTAAGAAGTTGAAGGGATTGGGGATTTCACTGGGAAAGATCCAGGCAGCTTGGCCAGAGGATGCGAAGCTGA AGGAGCCAAAGAAGAGATTTGTGGGGGATATCATGCCAAAGTTTACCACGGATGCTGAGGTGCTCGCGATCGGTGGCATGTTCTATGCTGATGTTGAGGAAGAGTGGGTGATGCAGCCTGGTGGCCCATTGGCTCACAAGTGCAATACTTTGATCCAGCCAAGTAGGCTTATTATGCTCACTGCGCAACGCTTTGTTCAGACCTTCTTGGGGGGCAACTACATTGCTTTGCATTTTCGGCGACATGGCTTCCTGAAGTTCTGTAATGTGAAGAAAGAGAGCTGCTTCTTCCCTATCCCTCAGGCAGCAGAATGCATTCTTCGAATCGTTGAGAAAGCTAACGCCCCAGTCATATATCTGTCTACTGATGCTGCCGAGAGTGAGACAAGTCTCCTGCAATCCTTGGTTGTGTTCAATGACAGGCAAGTCCCTCTTGTGAAAAGGCCAGAGCACCACAACTCTGAGAAATGGGATGCCTTGTTATACAGAAATCACATGGGTGGAGACAATCAGGTTGAGGCCATGCTCGACAAGACGATCTGTGCGCTGTCGAACGTTTTCATAGGTGCATCAGGCTCAACCTTCACAGAGGACATCCTGCGTCTACGGAGAGGCTGGGGTTCTGCGTCCCACTGCGACGAATACCTCTGCCAGGGTGAGCTACCCAACTTCATAGCGGAGCTAGACTGAGAAAATGACATCCTAGAAGAAGAATTGACAGCTACATCCCCCTTTTTTTCCCCACTACGATCTGGTGGCATGATACACATTCTGTAAATTGGCGTGTACATCCTAGTGTAAAAGAGCGATGATATTTGTTGTACCGGTACCCCCATTGATTTGTTCGGTGTTGTTACACGGTTAGGCAATAGAAAGAGTTTG                                                       ]
[+] EMBL C71662               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGATCATGTTAAGAAGTTGAAGGGATTGGGGATTTCACTGGGAAAGATCCAGGCAGCTTGGCCAGAGGATGCGA  NNGANAGGAGCCAAAGAAGAGATTTGTGGAGGATATCATGCCAAAGTTTACCACGGATGCTGAGGTGCTCGCGATCGGTGACATGTTCTATGCTGATGTTGAGGAAGAGTGGGTGATGCAGCCTGGTNGCCCATTGGCTCACAAGTGCAATACTTTGATCCAGCCAAGTAGGCTTATTATGCTCACTGCGCAACGTTTTGTTCAGACCTTCTTGGGGGGCAACTACATTGCTTT CATTTTCGGCGACATGGCTTCCTGAAGTNCTGTAATGTGAAGAAAGAGAGCTGCTTCTTCCCTATCCCTCAGGCAGCAGAAT CATTCTTCGAATCGTTNAG AAGCT ACG CCCAGTCATATATCTGTCTACTta                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]


>consensus_8414#0 CCCCACTCCGTCCACCCCGCCGCACCGACACTCTCCTCCGCCATGGATCGCGACCCCTCC GTCTCCGACGAGGACGACGACCTCGAGACCCTCGTCCCGCAGAACCACGTCAAGCCGCCC TCCTCCTCCTTCCACGTCGCCGGCCTCCGCGCCGCGGTCCCTCCCTCCGCCGCCTCGCTC GGCCGCGTCCTCTGGTCCCGCCGCTACCTCCTCCTCTTCGTCGCCCTCCCCGTCCTCTTC CTCGTGCTCTTCGTATCCCTTGGCGGCGCGTCCTCCCTTCGCCTGCCCGCCTCCATCCGC CTCCCCTCCGCCGCCGCTCCCGCCGCCGACCCCGCGGCGTCCCGGATGCGCGACGCCGAG CTCCGCGCGCTCTACCTCCTCCGCTCGCAGCGCTCGGGCCTCCTCGCCCTCTTCAACCGT ACGGCAGCACCCACCAACGGCAGCAGCTCGGGCTCGAACGCTGTCTCGTACGCCGATCTC CACGACGCGCTCCTCGGCCAGATCAAGATCAACCGCGAGGTCCAGGCGGCGCTCCTCTCC GCGCACCGCACTGGCGCTGCGGGCAATGCGACGGAGGATGGGTTGGATCTTGATCTGCCG GCTGACGGGTGCAGGAGGAGGGAATTGCCGTCCAACCGGCGGACCATAGAGTGGAACCCC AAGAAAGATCGATTCCTGTTCGCCATCTGCGTCTCCGGGCAAATGTCCAACCACTTGATT TGCTTGGAGAAGCACATGTTCTTCGCGGCGCTGCTTGGCCGGATCTTGGTGGTGCCTAGC CAGAAGCTGGATTATCAGTACGACCGGGTGCTTGATATCAACCACATTAATGATTGCATT GGAAGGAAGGTTGTAATTACCTATGAGGAATTCACAGAGAAGAGGAAGAAAGTGAGCATT GATCAGTTCATATGTTACGCGGCATCACCCCCTTGTTTCATTGATGAGGATCATGTTAAG AAGTTGAAGGGATTGGGGATTTCACTGGGAAAGATCCAGGCAGCTTGGCCAGAGGATGCG AAGCTGAAGGAGCCAAAGAAGAGATTTGTGGAGGATATCATGCCAAAGTTTACCACGGAT GCTGAGGTGCTCGCGATCGGTGACATGTTCTATGCTGATGTTGAGGAAGAGTGGGTGATG CAGCCTGGTGGCCCATTGGCTCACAAGTGCAATACTTTGATCCAGCCAAGTAGGCTTATT ATGCTCACTGCGCAACGCTTTGTTCAGACCTTCTTGGGGGGCAACTACATTGCTTTGCAT TTTCGGCGACATGGCTTCCTGAAGTTCTGTAATGTGAAGAAAGAGAGCTGCTTCTTCCCT ATCCCTCAGGCAGCAGAATGCATTCTTCGAATCGTTGAGAAAGCTAACGCCCCAGTCATA TATCTGTCTACTGATGCTGCCGAGAGTGAGACAAGTCTCCTGCAATCCTTGGTTGTGTTC AATGACAGGCAAGTCCCTCTTGTGAAAAGGCCAGAGCACCACAACTCTGAGAAATGGGAT GCCTTGTTATACAGAAATCACATGGGTGGAGACAATCAGGTTGAGGCCATGCTCGACAAG ACGATCTGTGCGCTGTCGAACGTTTTCATAGGTGCATCAGGCTCAACCTTCACAGAGGAC ATCCTGCGTCTACGGAGAGGCTGGGGTTCTGCGTCCCACTGCGACGAATACCTCTGCCAG GGTGAGCTACCCAACTTCATAGCGGAGCTAGACTGAGAAAATGACATCCTAGAAGAAGAA TTGACAGCTACATCCCCCTTTTTTTCCCCACTACGATCTGGTGGCATGATACACATTCTG TAAATTGGCGTGTACATCCTAGTGTAAAAGAGCGATGATATTTGTTGTACCGGTACCCCC ATTGATTTGTTCGGTGTTGTTACACGGTTAGGCAATAGAAAGAGTTTGGTTTTTGCGCTT GCTCAGTGTTCATACTCTGTTATACTGTGAGACAGCTTCATAG



consensusID : consensus_8414#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 859
fasta sequence
                              [AAATAACAAGTATTTTGTGTTCCATCAACAAAAAGGGTTACAGAAGATAACTTGTTTTTAAGCTTGTAACTGTAAAAAAAACTACTAGGTGTTACTTCAATACTACAAAGGAATCTGATTGATACATGTATAGGAGTTGATTGAGCATGATATATGACTTGTGCAGTTGTGCCATGCACTAAGAGTAGTTTAAATGTTACTAATGCTAGCGCAACTGCTCAAGTCTTTCCTTGCAATACTATGTGCTTGTGGTTATTTTGAGTGATGTATGCAACAAGTTGGCTATGTTTTTTTTTGAATAATGAGGCATTTACTGATATGTTCTCATCTTCCTGCAGTAATGTGAAGAAAGAGAGCTGCTTCTTCCCTATCCCTCAGGCAGCAGAATGCATTCTTCGAATCGTTGAGAAAGCTAACGCCCCAGTCATATATCTGTCTACTGATGCTGCCGAGAGTGAGACAAGTCTCCTGCAATCCTTGGTTGTGTTCAATGACAGGCAAGTCCCTCTTGTGAAAAGGCCAGAGCACCACAACTCTGAGAAATGGGATGCCTTGNTATACAGAAATCACATGGGTGGAGACAATCAGGTAACCGATACATTTCAGAGNTGCTGTCCAGATTTCTTTTGGACCNTTTGNTGNTGTACTAAACGGCAAAACCGGTTCGGCTTTTTTGCAGGNTGANGCCATGCTCGACAAGACGATCTGTGCGCTGTCGAACGNTTTCATAGGTGCATCANGCTCAACCTTNCAGAGGACATNCTGCGTCTACGGANAGGCTGGGGTCCTGCGTCCCACTGNGACGAATACCTTTGGCAAGGGNGAGCTACCCAACTTCATAACGGGGCTAGACTGANAA]

[+] EMBL CA765419             [AAATAACAAGTATTTTGTGTTCCATCAACAAAAAGGGTTACAGAAGATAACTTGTTTTTAAGCTTGTAACTGTAAAAAAAACTACTAGGTGTTACTTCAATACTACAAAGGAATCTGATTGATACATGTATAGGAGTTGATTGAGCATGATATATGACTTGTGCAGTTGTGCCATGCACTAAGAGTAGTTTAAATGTTACTAATGCTAGCGCAACTGCTCAAGTCTTTCCTTGCAATACTATGTGCTTGTGGTTATTTTGAGTGATGTATGCAACAAGTTGGCTATGTTTTTTTTTGAATAATGAGGCATTTACTGATATGTTCTCATCTTCCTGCAGTAATGTGAAGAAAGAGAGCTGCTTCTTCCCTATCCCTCAGGCAGCAGAATGCATTCTTCGAATCGTTGAGAAAGCTAACGCCCCAGTCATATATCTGTCTACTGATGCTGCCGAGAGTGAGACAAGTCTCCTGCAATCCTTGGTTGTGTTCAATGACAGGCAAGTCCCTCTTGTGAAAAGGCCAGAGCACCACAACTCTGAGAAATGGGATGCCTTGNTATACAGAAATCACATGGGTGGAGACAATCAGGTAACCGATACATTTCAGAGNTGCTGTCCAGATTTCTTTTGGACCNTTTGNTGNTGTACTAAACGGCAAAACCGGTTCGGCTTTTTTGCAGGNTGANGCCATGCTCGACAAGACGATCTGTGCGCTGTCGAACGNTTTCATAGGTGCATCANGCTCAACCTTNCAGAGGACATNCTGCGTCTACGGANAGGCTGGGGTCCTGCGTCCCACTGNGACGAATACCTTTGGCAAGGGNGAGCTACCCAACTTCATAACGGGGCTAGACTGANAA]


>consensus_8414#1 AAATAACAAGTATTTTGTGTTCCATCAACAAAAAGGGTTACAGAAGATAACTTGTTTTTA AGCTTGTAACTGTAAAAAAAACTACTAGGTGTTACTTCAATACTACAAAGGAATCTGATT GATACATGTATAGGAGTTGATTGAGCATGATATATGACTTGTGCAGTTGTGCCATGCACT AAGAGTAGTTTAAATGTTACTAATGCTAGCGCAACTGCTCAAGTCTTTCCTTGCAATACT ATGTGCTTGTGGTTATTTTGAGTGATGTATGCAACAAGTTGGCTATGTTTTTTTTTGAAT AATGAGGCATTTACTGATATGTTCTCATCTTCCTGCAGTAATGTGAAGAAAGAGAGCTGC TTCTTCCCTATCCCTCAGGCAGCAGAATGCATTCTTCGAATCGTTGAGAAAGCTAACGCC CCAGTCATATATCTGTCTACTGATGCTGCCGAGAGTGAGACAAGTCTCCTGCAATCCTTG GTTGTGTTCAATGACAGGCAAGTCCCTCTTGTGAAAAGGCCAGAGCACCACAACTCTGAG AAATGGGATGCCTTGNTATACAGAAATCACATGGGTGGAGACAATCAGGTAACCGATACA TTTCAGAGNTGCTGTCCAGATTTCTTTTGGACCNTTTGNTGNTGTACTAAACGGCAAAAC CGGTTCGGCTTTTTTGCAGGNTGANGCCATGCTCGACAAGACGATCTGTGCGCTGTCGAA CGNTTTCATAGGTGCATCANGCTCAACCTTNCAGAGGACATNCTGCGTCTACGGANAGGC TGGGGTCCTGCGTCCCACTGNGACGAATACCTTTGGCAAGGGNGAGCTACCCAACTTCAT AACGGGGCTAGACTGANAA



consensusID : consensus_8414#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 470
fasta sequence
                              [CCACCACAACTCTGAGAAATTGGGATNGCCTTGTTATACAGAAATTCACATGGGTTGGAGACAATCAGGTTTGAGGCCATTGCTCGACAAGACCGANCTGTGCCGCTTGTCGAACCGTTTTCATAAGGTTGCATCAAGGCCTCAACCTTCACCAAGAAGGAACAATCCTGCCGTCTACGGAAGAAGGCTGGGGTTCNGCCGTCCCAACTTGCCGAACGAATAACCCTCTTGCCAGGGTGAGCTACCCAACTTCATAGCGGAGCTAGACTGAGAAAATGACATCCTAGAAGAAGAATTGACAGCTACATCCCCCTTTTTTTCCCCACTACGATCTGGTGGCATGATACACATTCTGTAAATTGGCGTGTACATCCTAGTGTAAAAGAGCGATGATATTTGTTGTACCGTACCCCCATTGATTTGTTCGGTGTTGTTACACGGTTAGGCAATAGAAAGAGTTTGGTTTTAAA]

[+] EMBL AU093726             [CCACCACAACTCTGAGAAATTGGGATNGCCTTGTTATACAGAAATTCACATGGGTTGGAGACAATCAGGTTTGAGGCCATTGCTCGACAAGACCGANCTGTGCCGCTTGTCGAACCGTTTTCATAAGGTTGCATCAAGGCCTCAACCTTCACCAAGAAGGAACAATCCTGCCGTCTACGGAAGAAGGCTGGGGTTCNGCCGTCCCAACTTGCCGAACGAATAACCCTCTTGCCAGGGTGAGCTACCCAACTTCATAGCGGAGCTAGACTGAGAAAATGACATCCTAGAAGAAGAATTGACAGCTACATCCCCCTTTTTTTCCCCACTACGATCTGGTGGCATGATACACATTCTGTAAATTGGCGTGTACATCCTAGTGTAAAAGAGCGATGATATTTGTTGTACCGTACCCCCATTGATTTGTTCGGTGTTGTTACACGGTTAGGCAATAGAAAGAGTTTGGTTTTAAA]


>consensus_8414#2 CCACCACAACTCTGAGAAATTGGGATNGCCTTGTTATACAGAAATTCACATGGGTTGGAG ACAATCAGGTTTGAGGCCATTGCTCGACAAGACCGANCTGTGCCGCTTGTCGAACCGTTT TCATAAGGTTGCATCAAGGCCTCAACCTTCACCAAGAAGGAACAATCCTGCCGTCTACGG AAGAAGGCTGGGGTTCNGCCGTCCCAACTTGCCGAACGAATAACCCTCTTGCCAGGGTGA GCTACCCAACTTCATAGCGGAGCTAGACTGAGAAAATGACATCCTAGAAGAAGAATTGAC AGCTACATCCCCCTTTTTTTCCCCACTACGATCTGGTGGCATGATACACATTCTGTAAAT TGGCGTGTACATCCTAGTGTAAAAGAGCGATGATATTTGTTGTACCGTACCCCCATTGAT TTGTTCGGTGTTGTTACACGGTTAGGCAATAGAAAGAGTTTGGTTTTAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8414#0      CCCCACTCCGTCCACCCCGCCGCACCGACACTCTCCTCCGCCATGGATCGCGACCCCTCC 60
consensus_8414#2      ------------------------------------------------------------
consensus_8414#1      ------------------------------------------------------------
                                                                                  

consensus_8414#0      GTCTCCGACGAGGACGACGACCTCGAGACCCTCGTCCCGCAGAACCACGTCAAGCCGCCC 120
consensus_8414#2      ------------------------------------------------------------
consensus_8414#1      ------------------------------------------------------------
                                                                                  

consensus_8414#0      TCCTCCTCCTTCCACGTCGCCGGCCTCCGCGCCGCGGTCCCTCCCTCCGCCGCCTCGCTC 180
consensus_8414#2      ------------------------------------------------------------
consensus_8414#1      ------------------------------------------------------------
                                                                                  

consensus_8414#0      GGCCGCGTCCTCTGGTCCCGCCGCTACCTCCTCCTCTTCGTCGCCCTCCCCGTCCTCTTC 240
consensus_8414#2      ------------------------------------------------------------
consensus_8414#1      ------------------------------------------------------------
                                                                                  

consensus_8414#0      CTCGTGCTCTTCGTATCCCTTGGCGGCGCGTCCTCCCTTCGCCTGCCCGCCTCCATCCGC 300
consensus_8414#2      ------------------------------------------------------------
consensus_8414#1      ------------------------------------------------------------
                                                                                  

consensus_8414#0      CTCCCCTCCGCCGCCGCTCCCGCCGCCGACCCCGCGGCGTCCCGGATGCGCGACGCCGAG 360
consensus_8414#2      ------------------------------------------------------------
consensus_8414#1      ------------------------------------------------------------
                                                                                  

consensus_8414#0      CTCCGCGCGCTCTACCTCCTCCGCTCGCAGCGCTCGGGCCTCCTCGCCCTCTTCAACCGT 420
consensus_8414#2      ------------------------------------------------------------
consensus_8414#1      ------------------------------------------------------------
                                                                                  

consensus_8414#0      ACGGCAGCACCCACCAACGGCAGCAGCTCGGGCTCGAACGCTGTCTCGTACGCCGATCTC 480
consensus_8414#2      ------------------------------------------------------------
consensus_8414#1      ------------------------------------------------------------
                                                                                  

consensus_8414#0      CACGACGCGCTCCTCGGCCAGATCAAGATCAACCGCGAGGTCCAGGCGGCGCTCCTCTCC 540
consensus_8414#2      ------------------------------------------------------------
consensus_8414#1      ------------------------------------------------------------
                                                                                  

consensus_8414#0      GCGCACCGCACTGGCGCTGCGGGCAATGCGACGGAGGATGGGTTGGATCTTGATCTGCCG 600
consensus_8414#2      ------------------------------------------------------------
consensus_8414#1      ------------------------------------------------------------
                                                                                  

consensus_8414#0      GCTGACGGGTGCAGGAGGAGGGAATTGCCGTCCAACCGGCGGACCATAGAGTGGAACCCC 660
consensus_8414#2      ------------------------------------------------------------
consensus_8414#1      ------------------------------------------------------------
                                                                                  

consensus_8414#0      AAGAAAGATCGATTCCTGTTCGCCATCTGCGTCTCCGGGCAAATGTCCAACCACTTGATT 720
consensus_8414#2      ------------------------------------------------------------
consensus_8414#1      ------------------------------------------------------------
                                                                                  

consensus_8414#0      TGCTTGGAGAAGCACATGTTCTTCGCGGCGCTGCTTGGCCGGATCTTGGTGGTGCCTAGC 780
consensus_8414#2      ------------------------------------------------------------
consensus_8414#1      ------------------------------------------------------------
                                                                                  

consensus_8414#0      CAGAAGCTGGATTATCAGTACGACCGGGTGCTTGATATCAACCACATTAATGATTGCATT 840
consensus_8414#2      ------------------------------------------------------------
consensus_8414#1      ------------------------------------------------------------
                                                                                  

consensus_8414#0      GGAAGGAAGGTTGTAATTACCTATGAGGAATTCACAGAGAAGAGGAAGAAAGTGAGCATT 900
consensus_8414#2      ------------------------------------------------------------
consensus_8414#1      ------------------------------------------------------------
                                                                                  

consensus_8414#0      GATCAGTTCATATGTTACGCGGCATCACCCCCTTGTTTCATTGATGAGGATCATGTTAAG 960
consensus_8414#2      ------------------------------------------------------------
consensus_8414#1      -----------------------------------------------------AAATAAC 7
                                                                                  

consensus_8414#0      AAGTTGAAGGGATTGGGGATTTCACTGGGAAAGATCCAGGCAGCTTGGCCAGAGGATGCG 1020
consensus_8414#2      ------------------------------------------------------------
consensus_8414#1      AAGTATTTTGTGTTCCATCAACAAAAAGGGTTACAGAAGATAACTTGTTTTTAAGCTTGT 67
                                                                                  

consensus_8414#0      AAGCTGAAGGAGCCAAAGAAGAGATTTGTGGAGGATATCATGCCAAAGTTTACCACGGAT 1080
consensus_8414#2      ------------------------------------------------------------
consensus_8414#1      AACTGTAAAAAAAACTACTAGGTGTTACTTCAATACTACAAAGGAATCTGATTGATACAT 127
                                                                                  

consensus_8414#0      GCTGAGGTGCTCGCGATCGGTGACATGTTCTATGC-TGATGTTGAGGAAGAGTGGGTGAT 1139
consensus_8414#2      ------------------------------------------------------------
consensus_8414#1      GTATAGGAGTTGATTGAGCATGATATATGACTTGTGCAGTTGTGCCATGCACTAAGAGTA 187
                                                                                  

consensus_8414#0      GCAGCCTGGTGGCCCATTGGCTCACAAGTGCAATACTTTGATCCAGCCAAGTAGGCTTAT 1199
consensus_8414#2      ------------------------------------------------------------
consensus_8414#1      GTTTAAATGTTACTAATGCTAGCGCAACTGCTCAAGTCTTTCCTTGCAATACTATGTGCT 247
                                                                                  

consensus_8414#0      TATGCTCACTGCGCAACGCTTTGTTCAGACCTTCTTGGGGGGCAACTACATTGCTTTGCA 1259
consensus_8414#2      ------------------------------------------------------------
consensus_8414#1      TGTGGTTATTTTGAGTGATGTATGCAACAAGTTGGCTATGTTTTTTTTTGAATAATGAGG 307
                                                                                  

consensus_8414#0      TTTTCGGCGACATGGCTTCCTGAAGTT-CTGTAATGTGAAGAAAGAGAGCTGCTTCTTCC 1318
consensus_8414#2      ------------------------------------------------------------
consensus_8414#1      CATTTACTGATATGTTCTCATCTTCCTGCAGTAATGTGAAGAAAGAGAGCTGCTTCTTCC 367
                                                                                  

consensus_8414#0      CTATCCCTCAGGCAGCAGAATGCATTCTTCGAATCGTTGAGAAAGCTAACGCCCCAGTCA 1378
consensus_8414#2      ------------------------------------------------------------
consensus_8414#1      CTATCCCTCAGGCAGCAGAATGCATTCTTCGAATCGTTGAGAAAGCTAACGCCCCAGTCA 427
                                                                                  

consensus_8414#0      TATATCTGTCTACTGATGCTGCCGAGAGTGAGACAAGTCTCCTGCAATCCTTGGTTGTGT 1438
consensus_8414#2      ------------------------------------------------------------
consensus_8414#1      TATATCTGTCTACTGATGCTGCCGAGAGTGAGACAAGTCTCCTGCAATCCTTGGTTGTGT 487
                                                                                  

consensus_8414#0      TCAATGACAGGCAAGTCCCTCTTGTGAAAAGGCCAGAGCACCACAACTCTGAGAAATGGG 1498
consensus_8414#2      -------------------------------------CCACCACAACTCTGAGAAATTGG 23
consensus_8414#1      TCAATGACAGGCAAGTCCCTCTTGTGAAAAGGCCAGAGCACCACAACTCTGAGAAATGGG 547
                                                            ******************* **

consensus_8414#0      A--TGCCTTGTTATACAGAAAT-CACATGGGT-GGAGACAATCAGGTT-GAGGCCAT-GC 1552
consensus_8414#2      GATNGCCTTGTTATACAGAAATTCACATGGGTTGGAGACAATCAGGTTTGAGGCCATTGC 83
consensus_8414#1      A--TGCCTTGNTATACAGAAAT-CACATGGGT-GGAGACAATCAGGTA-ACCGATACATT 602
                          ****** *********** ********* **************     *  *    

consensus_8414#0      TCGACAAGAC-GATCTGTGCG--CTGTCGAAC-GTTTTCATAGG--TGCATCAGG--CTC 1604
consensus_8414#2      TCGACAAGACCGANCTGTGCCGCTTGTCGAACCGTTTTCATAAGGTTGCATCAAGGCCTC 143
consensus_8414#1      TCAGAGNTGCTGTCCAGATTT--CTTTTGGAC--CNTTTGNTGN--TGTACTAAA----- 651
                      **       * *  * *       * * * **    **        ** *  *       

consensus_8414#0      AACCTTCACAGAGGAC-----ATCCTGC--GTCTACGGAG--AGGCTGGGGTTCTGC-GT 1654
consensus_8414#2      AACCTTCACCAAGAAGGAACAATCCTGCC-GTCTACGGAAGAAGGCTGGGGTTCNGCCGT 202
consensus_8414#1      ------CGGCAAAACCG----GTTCGGCTTTTTTGCAGGNTGANGCCATG-CTCGACAAG 700
                            *    *          * * **   * * * *    * **   *  **  *   

consensus_8414#0      CCCA--CTGC--GACGAATACCTCT---GCCAGGGTGAGCTACCCAACTTCATAGCGGAG 1707
consensus_8414#2      CCCAACTTGCCGAACGAATAACCCTCTTGCCAGGGTGAGCTACCCAACTTCATAGCGGAG 262
consensus_8414#1      ACGA-TCTGTGCGCTGTCGAACGNTTTCATAGGTGCATCANGCTCAACCTTNCAGAGGA- 758
                       * *   **      *   * *  *       * *       * **** *   ** *** 

consensus_8414#0      CTAGACTGAGAAAATGACATCCTAGAAGAAGAATTGACAGCTACATCCCCCTTTTTTTCC 1767
consensus_8414#2      CTAGACTGAGAAAATGACATCCTAGAAGAAGAATTGACAGCTACATCCCCCTTTTTTTCC 322
consensus_8414#1      -CATNCTGCG----------TCTACGGANAGGCTGGGGTCCTGCGTCCCACTGNGACGAA 807
                        *  *** *           ***     **  * *    ** * **** **        

consensus_8414#0      CCACTACGATCTGGTGGCATGATACACATTCTGTAAATTGGCGTGTACATCCTAGTGTAA 1827
consensus_8414#2      CCACTACGATCTGGTGGCATGATACACATTCTGTAAATTGGCGTGTACATCCTAGTGTAA 382
consensus_8414#1      TACCTTTGG--CAAGGGNGAGCTACCCAACTTCATAACGGGGCTAGACTGANAA------ 859
                         **  *       **   * *** **   *   **  **  *  **     *      

consensus_8414#0      AAGAGCGATGATATTTGTTGTACCGGTACCCCCATTGATTTGTTCGGTGTTGTTACACGG 1887
consensus_8414#2      AAGAGCGATGATATTTGTTGTACCG-TACCCCCATTGATTTGTTCGGTGTTGTTACACGG 441
consensus_8414#1      ------------------------------------------------------------
                                                                                  

consensus_8414#0      TTAGGCAATAGAAAGAGTTTGGTTTTTGCGCTTGCTCAGTGTTCATACTCTGTTATACTG 1947
consensus_8414#2      TTAGGCAATAGAAAGAGTTTGGTTTTAAA------------------------------- 470
consensus_8414#1      ------------------------------------------------------------
                                                                                  

consensus_8414#0      TGAGACAGCTTCATAG 1963
consensus_8414#2      ----------------
consensus_8414#1      ----------------
                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)