cluster # 8416

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Oryza sativa
cluster # 8416 cluster # 8416 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8416#0 length = 610 sequences # 2

consensus_8416#1 length = 341 sequences # 3

consensusID : consensus_8416#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 610
fasta sequence

                              [CCGAAGTACAAGGGCCTCCGAATGGCANTTCGGCGCCGAAACGCGCCCAATGGCGGAANTGGTGGTGGTGGTGGCCAGGGACGAAAAGTGGCAACGCCGCCGCCGGGGCTTCGAACTGCGGCCACTGCGGGTGGACGAAGCCGGCGCCCCAGTGGGTGGGGTCGCTGCACGGCCACGGGTAGCAGATGCCGCACATGTTGGTGAACTGCAGGTTCANCCGTCGTCGACGACGGCGCCGGCGTGNCCNTGGTCNCCNCCTTCACCTTTGGCTTCTCCTCCTTCTTCTCTTCCTTCTTGCCTTCCTCCGGTTTCTTCTCGTCGCCCTTCTTCTTCTCCTCCTCGGATTTCTTCTTCTCCTCAGGTTTCTTTTCCTCAGGCTGCTTCTTCTCCTCCTTCTTGGCCTGATCCGGCTTCTTCTCCTCCTTCTTTGCCTCTGCAAGCTTCCCAAATTCAATGTCTTTGATGACCCCGCAGGCCTTGCATCTTAGCTTATGGGCGAGCTCCTCTGGCTTGAAATGGCCCGATATGATCACCCTATTGTTCGAGTTCTCATAAACGATGTTAATGATCTTCTCCTTGTCTGCTTCATGTTCGTTCAATTCAAACCACA]

[-] EMBL OSS13179A            [CCGAAGTACAAGGGCCTCCGAATGGCANTTCGGCGCCGAAACGCGCCCAATGGCGGAANTGGTGGTGGTGGTGGCCAGGGACGAAAAGTGGCAACGCCGCCGCCGGGGCTTCGAACTGCGGCCACTGCGGGTGGACGAAGCCGGCGCCCCAGTGGGTGGGGTCGCTGCACGGCCACGGGTAGCAGATGCCGCACATGTTGGTGAACTGCAGGTTCANCCGTCGTCGACGACGGCGCCGGCGTGNCCNTGGTCNCCNCCTTCACCTTTGGCTTCTCCTCCTTCTTCTCTTCCTTCTTGCCTTCCTCCGGTTTCTTCTCGTCGCCCTTCTTCTTCTCCTCCTCGGATTTCTTCTTCTCCTCAGGTTTCTTTTCCTCAGGCTGCTTCTTCTCCTCCTTCTTGGCCTGATCCGGCTTCTTCTCCTCCTTCTTTGCCTCTGCAAGC                                                                                                                                                                         ]
[+] EMBL AK111318             [                                                                                  gaacgcTGGCAACGCCGCCGCCGGGGCTTCGCACTGCGGCCACTGCGGGTGGACGACGCCGGCGCCCCAGTGGGTGGGGTCGCTGCACGGCCACGGGTAGCAGATGCCGCACATGTTGGTGAACTGCAGGTTCA CCGTCGTCGACGACGGCGCCGGCGTGGCCTTGGTCTCCTCCTTCACCTTTGGCTTCTCCTCCTTCTTCTCTTCCTTCTTGCCTTCCTCCGGTTTCTTCTCGTCGCCCTTCTTCTTCTCCTCCTCGGATTTCTTCTTCTCCTCAGGTTTCTTTTCCTCAGGCTGCTTCTTCTCCTCCTTCTTGGCCTGATCCGGCTTCTTCTCCTCCTTCTTTGCCTCTGCAAGCTTCCCAAATTCAATGTCTTTGATGACCCCGCAGGCCTTGCATCTTAGCTTATGGGCGAGCTCCTCTGGCTTGAAATGGCCCGATATGATCACCCTATTGTTCGAGTTCTCATAAACGATGTTAATGATCTTCTCCTTGTCTGCTTCATGTTCGTTCAATTCAAACCACA]




>consensus_8416#0
CCGAAGTACAAGGGCCTCCGAATGGCANTTCGGCGCCGAAACGCGCCCAATGGCGGAANT
GGTGGTGGTGGTGGCCAGGGACGAAAAGTGGCAACGCCGCCGCCGGGGCTTCGAACTGCG
GCCACTGCGGGTGGACGAAGCCGGCGCCCCAGTGGGTGGGGTCGCTGCACGGCCACGGGT
AGCAGATGCCGCACATGTTGGTGAACTGCAGGTTCANCCGTCGTCGACGACGGCGCCGGC
GTGNCCNTGGTCNCCNCCTTCACCTTTGGCTTCTCCTCCTTCTTCTCTTCCTTCTTGCCT
TCCTCCGGTTTCTTCTCGTCGCCCTTCTTCTTCTCCTCCTCGGATTTCTTCTTCTCCTCA
GGTTTCTTTTCCTCAGGCTGCTTCTTCTCCTCCTTCTTGGCCTGATCCGGCTTCTTCTCC
TCCTTCTTTGCCTCTGCAAGCTTCCCAAATTCAATGTCTTTGATGACCCCGCAGGCCTTG
CATCTTAGCTTATGGGCGAGCTCCTCTGGCTTGAAATGGCCCGATATGATCACCCTATTG
TTCGAGTTCTCATAAACGATGTTAATGATCTTCTCCTTGTCTGCTTCATGTTCGTTCAAT
TCAAACCACA

consensusID : consensus_8416#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 341
fasta sequence

                              [CCCGGTTCTTCTCGCGCCTNCTCTTCTCCTCCTCGGATTCTCNTCTCCTCAGGTTCTTTCCTNA-GCTGCTTCTTCTCCTCCTTCTTGGCCTGATCCGGCTTCTTCTCCTCCTTCTTTGCCTCTGCAAGCTTCCCAAANTCAATGTCTTTGATGACCCCGCAGGCCTTGCATCTTAGCTTATGGGCGAGCTCCTCTGGCTTGAAATGGCCCGATATGATCACCCTATTGTTCGAGTTCTCATAAACGATGTTAATGATCTTCTCCTTGTCTTTGAGTTTGTTAAGGACTTTCTGGATCTTCTTGCAACACTTTTCACACTCGAGATTTGCCTTAATGATCAA]

[-] EMBL OSS13007A            [CCCGGTTCTTCTCGCGCCTNCTCTTCTCCTCCTCGGATTCTCNTCTCCTCAGGTTCTTTCCTNA GCTGCTTCTTCTCCTCCTTCTT GCCTGATCCGGCTTCNTCTCCTCCTTCTTTGCCTCTGCAAGNTTCCCAAANTCAATGTCTTTGATGACCCCGCAGGCCTTGCATCTTAGCTTATGGGCGAGCTCCTCTGGCNTGAAATGGCCCGATATGATCACCCTATTGTTCGAGTTCTCATAAACGATGTTAATGATCTTCTCCTTGTCTTTGAGTTTGTTAAGGACTTTCTGGATCTTCTTGCAACACTTTTCACACTCGAGATTTGCCTTAATGATCAA]
[-] EMBL OSS13121A            [                                                       tTTTCCTCAGGCTGCTTCTTCTCCTCCTTCTTGGCCTGATCCGGCTTCTTCTCCTCCTTCTTTGCCTCTGCAAGCTTCCCAAANTCAATGTCTTTGATGACCCCGCAGGCCTTGCATCTTAGCTTATGGGCGAGCTCCTCTGGCTTGAAATGGCCCGATATGATCACCCTATTGTTCGAGTTCTCATAAACGATGTTAATGATCTTCTCCTTGTCTTTGAGTTTGTTAAGGACTTTCTGGATCTTCTTGCAACACTTTTCACACTCGAGATTTGCCTTAATGATCAA]
[-] EMBL OSS11928A            [                                                                                       GGCCTGANCCGGCTTCTTCNCCTCCTTCTTTGCCTCTGCAAGCTTCCCAAATTCAATGTCTTTGATGACCCCGCAGGCCTTGCATCTTAGCTTATGGGCGAGCTCCTCTGGCTTGAAATGGCCCGATATGATCACCCTATTGTTCGAGNTCTCATAAACGATGTTAATGATCTTCTCCTTGTCTTTNAGTTTGTTAAGGACTTTCTGGATCTTCTTGCAACACTTTTCACACTCGAGATTTGCCTTAATGATCAA]




>consensus_8416#1
CCCGGTTCTTCTCGCGCCTNCTCTTCTCCTCCTCGGATTCTCNTCTCCTCAGGTTCTTTC
CTNAGCTGCTTCTTCTCCTCCTTCTTGGCCTGATCCGGCTTCTTCTCCTCCTTCTTTGCC
TCTGCAAGCTTCCCAAANTCAATGTCTTTGATGACCCCGCAGGCCTTGCATCTTAGCTTA
TGGGCGAGCTCCTCTGGCTTGAAATGGCCCGATATGATCACCCTATTGTTCGAGTTCTCA
TAAACGATGTTAATGATCTTCTCCTTGTCTTTGAGTTTGTTAAGGACTTTCTGGATCTTC
TTGCAACACTTTTCACACTCGAGATTTGCCTTAATGATCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8416#0      CCGAAGTACAAGGGCCTCCGAATGGCANTTCGGCGCCGAAACGCGCCCAATGGCGGAANT 60
consensus_8416#1      ------------------------------------------------------------
                                                                                  

consensus_8416#0      GGTGGTGGTGGTGGCCAGGGACGAAAAGTGGCAACGCCGCCGCCGGGGCTTCGAACTGCG 120
consensus_8416#1      ------------------------------------------------------------
                                                                                  

consensus_8416#0      GCCACTGCGGGTGGACGAAGCCGGCGCCCCAGTGGGTGGGGTCGCTGCACGGCCACGGGT 180
consensus_8416#1      ------------------------------------------------------------
                                                                                  

consensus_8416#0      AGCAGATGCCGCACATGTTGGTGAACTGCAGGTTCANCCGTCGTCGACGACGGCGCCGGC 240
consensus_8416#1      ------------------------------------------------------------
                                                                                  

consensus_8416#0      GTGNCCNTGGTCNCCNCCTTCACCTTTGGCTTCTCCTCCTTCTTCTCTTCCTTCTTGCCT 300
consensus_8416#1      ------------------------------------------------------------
                                                                                  

consensus_8416#0      TCCTCCGGTTTCTTCTCGTCGCCCTTCTTCTTCTCCTCCTCGGATTTCTTCTTCTCCTCA 360
consensus_8416#1      ----CCCGGTTCTTCT---CGCGCCTNCTCTTCTCCTCCTCGGATTC--TCNTCTCCTCA 51
                          ** * *******   *** * *  ******************   ** ********

consensus_8416#0      GGTTTCTTTTCCTCAGGCTGCTTCTTCTCCTCCTTCTTGGCCTGATCCGGCTTCTTCTCC 420
consensus_8416#1      GGTT--CTTTCCTNAG-CTGCTTCTTCTCCTCCTTCTTGGCCTGATCCGGCTTCTTCTCC 108
                      ****   ****** ** *******************************************

consensus_8416#0      TCCTTCTTTGCCTCTGCAAGCTTCCCAAATTCAATGTCTTTGATGACCCCGCAGGCCTTG 480
consensus_8416#1      TCCTTCTTTGCCTCTGCAAGCTTCCCAAANTCAATGTCTTTGATGACCCCGCAGGCCTTG 168
                      ***************************** ******************************

consensus_8416#0      CATCTTAGCTTATGGGCGAGCTCCTCTGGCTTGAAATGGCCCGATATGATCACCCTATTG 540
consensus_8416#1      CATCTTAGCTTATGGGCGAGCTCCTCTGGCTTGAAATGGCCCGATATGATCACCCTATTG 228
                      ************************************************************

consensus_8416#0      TTCGAGTTCTCATAAACGATGTTAATGATCTTCTCCTTGTCTGCTTCATGTTCGTTCAAT 600
consensus_8416#1      TTCGAGTTCTCATAAACGATGTTAATGATCTTCTCCTTGTCT---TTGAGTTTGTTAAGG 285
                      ******************************************   *   *** *** *  

consensus_8416#0      TCAAACCACA---------------------------------------------- 610
consensus_8416#1      ACTTTCTGGATCTTCTTGCAACACTTTTCACACTCGAGATTTGCCTTAATGATCAA 341
                       *   *   *