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Oryza sativa
cluster # 8425 cluster # 8425       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8425#0 length = 2420 sequences # 5  

consensusID : consensus_8425#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2420
fasta sequence
                              [CTCGCGCTATCCCGTCTCCTCTCCTGGTTCCCTCTTTCTCCCGCTCCGTCCGCCTCCGGTGAGCTGAGCTCCGGCGAGGCGAGGTCGGAGATCCCACCGCCGTGTCGCCGCCGCCTCCAAGTTCTCCTTCCTCCCTCGCCTCTTCGCGCCGGCGAGGTCCCACCTTCGCCTTCCCGGATCGGCGCCGGTGAGGTCCGGCGACATATCGCGTCCCCGTGCATCCATCTACTCGGCCGGCGACCGCGCGCCCCTTCGCCGTCGTCTTATGCGCTTCCCACGGGGCCGCACGATCCGGACATGGGCGCGTTTGGGCGAAGACGCCGCCTATTCGCGGTTCGCGCCCCCCTCCTCTCCCGCTTCGTTTCTCCCCAATCTCCACCTCCACCTTCTGCGCGCGCCGCTGCCATTCACACGCATCGAGTAAGCTCGATCTCATCACCTCCCGAGCTGTAGTCTTTGCCCGCACTTGAGGTCGCGCCGGCCGCCGGGGCGGC--AGAGAGAGAGAGAGAGAGAGAGGATTCAGAGAGGTGTTGTTTGGCCGCGCACGAGAGGTGTTCGACGATTTGCCCACCTGGTCTCCTCCAAGCCAGAGAGAGGTTATGCGCCGGTGCGGCCGAATTTTTTTCCCTCCGTCTCTCAAGTTCGTGTCTCATAGCGGCGGCAGGCTCTCCGCGACACGCTTCTCTACCACCGGGTTCGACCTCCCCGACTGGTTCAGGAACCCCAAGGACGATGGCTCATGCGCCGGCTTGGATGACGAGGAGGACGACATTTTTGTGCTCCCGACTGAACCCAACGTCTCGGATGAGCGAAGAAGCCAGAGCAGCACCTCCAGGTCGCTGTCGATCCGCCCTGGCTTTCCTGCAACTGCCTCCCATGAGGATGCTGAGTTCGAGGCCGACATCGATGAGGTCAGCAGGATCCTTAGTGCTCGTTTCGCGTCTCCTGAGGCCATTATGATAGCCATGGACTGCTGCTCTGTAAGGGTCACTGGCTGCCTTGTTGACAAGATCCTGACGAGGTTCAGCAATGATTGGGTGGCGGCATTCGGGTTCTTCATGTGGGTTGGCACTCAGGGAGGGTACTGCCATTGTGCCGATTCATATGACTTGATGGTAGATATACTGGGGAAGTTCAAGCAGTTTGATCTGATGTGGGGTTTGATCAATCAGATGGTTGAGGTTGGAGGCTTGATGTCGCTCATGACGATGACAAAGGTGATGAGAAGGCTTGCTGGGGCAAGTCGATGGACCGAGGCCATCGACGCCTTCCATAAGATGGATCGGTTTGGAGTTGTGAAGGATACAAAGGCCATGAATGTGCTCCTGGACACACTGTGCAAGGAGAGGAGCGTGAAGCGCGCAAGAGGCGTCTTCCAAGAGCTGAGGGGAACAATACCTCCAGACGAGAACAGCTTCAATACTCTCGTGCATGGTTGGTGTAAGGCAAGGATGCTGAAGGAAGCTCTAGACACAATGGAGGAGATGAAGCAGCATGGATTCAGTCCTTCAGTGGTGACTTATACCAGCCTGGTAGAAGCATACTGCATGGAGAAAGATTTTCAGACTGTTTACGCTCTCTTGGACGAGATGCGCAAGAGGCGGTGTCCCCCAAATGTTGTTACATATACCATTTTGATGCATGCACTGGGGAAGGCTGGGAGAACGCGAGAAGCTTTGGATACCTTTGACAAGTTGAAGGAAGATGGTGTTGCTCCAGATGCTTCCTTCTACAACTCCCTGATCTACATACTTGGCAGAGCTGGGAGGTTGGAAGATGCATACTCTGTGGTTGAAGAAATGCGCACAACTGGAATCGCCCCTAACGTCACTACCTTCAACACCTTGATTTCTGCTGCTTGTGACCACTCTCAGGCAGAGAATGCCCTGAAGCTTCTGGTTAAGATGGAGGAGCAGTCATGCAATCCAGACATAAAGACATACACGCCATTGCTGAAGCTGTGCTGTAAAAGACAGTGGGTAAAGATACTTCTGTTCCTAGTGTGCCATATGTTTAGAAAGGACATTAGCCCTGATTTCAGCACTTACACCTTGTTGGTAAGCTGGCTGTGCAGAAATGGGAAGGTTGCCCAGTCTTGCCTGTTCTTGGAGGAAATGGTGTCAAAGGGTTTTGCTCCAAAGCAGGAGACATTTGATCTTGTGATGGAGAAGCTTGAGAAGAGGAATCTGCAGTCAGTGTACAAAAAGATTCAAGTTCTCAGGACGCAGGTAACAAATCTGAAGCATATGGAGTCCTTTCAATGAGAGGTCACTGATGGTGGACAACATTGTGCTGTGTTGTACAACACCTGTGGTCATGAATCTTAATATACTGCTCATTGGAATGTTTATGCAAACTTAATATGTACTGCTCATTGGAATGTTTATGCAAATGCGACTGTGATTCAGTAAAAAAAAAAA]

[+] EMBL AK063445             [CTCGCGCTATCCCGTCTCCTCTCCTGGTTCCCTCTTTCTCCCGCTCCGTCCGCCTCCGGTGAGCTGAGCTCCGGCGAGGCGAGGTCGGAGATCCCACCGCCGTGTCGCCGCCGCCTCCAAGTTCTCCTTCCTCCCTCGCCTCTTCGCGCCGGCGAGGTCCCACCTTCGCCTTCCCGGATCGGCGCCGGTGAGGTCCGGCGACATATCGCGTCCCCGTGCATCCATCTACTCGGCCGGCGACCGCGCGCCCCTTCGCCGTCGTCTTATGCGCTTCCCACGGGGCCGCACGATCCGGACATGGGCGCGTTTGGGCGAAGACGCCGCCTATTCGCGGTTCGCGCCCCCCTCCTCTCCCGCTTCGTTTCTCCCCAATCTCCACCTCCACCTTCTGCGCGCGCCGCTGCCATTCACACGCATCGAGTAAGCTCGATCTCATCACCTCCCGAGCTGTAGTCTTTGCCCGCACTTGAGGTCGCGCCGGCCGCCGGGGCGGC  AGAGAGAGAGAGAGAGAGAGAGGATTCAGAGAGGTGTTGTTTGGCCGCGCACGAGAGGTGTTCGACGATTTGCCCACCTGGTCTCCTCCAAGCCAGAGAGAGGTTATGCGCCGGTGCGGCCGAATTTTTTTCCCTCCGTCTCTCAAGTTCGTGTCTCATAGCGGCGGCAGGCTCTCCGCGACACGCTTCTCTACCACCGGGTTCGACCTCCCCGACTGGTTCAGGAACCCCAAGGACGATGGCTCATGCGCCGGCTTGGATGACGAGGAGGACGACATTTTTGTGCTCCCGACTGAACCCAACGTCTCGGATGAGCGAAGAAGCCAGAGCAGCACCTCCAGGTCGCTGTCGATCCGCCCTGGCTTTCCTGCAACTGCCTCCCATGAGGATGCTGAGTTCGAGGCCGACATCGATGAGGTCAGCAGGATCCTTAGTGCTCGTTTCGCGTCTCCTGAGGCCATTATGATAGCCATGGACTGCTGCTCTGTAAGGGTCACTGGCTGCCTTGTTGACAAGATCCTGACGAGGTTCAGCAATGATTGGGTGGCGGCATTCGGGTTCTTCATGTGGGTTGGCACTCAGGGAGGGTACTGCCATTGTGCCGATTCATATGACTTGATGGTAGATATACTGGGGAAGTTCAAGCAGTTTGATCTGATGTGGGGTTTGATCAATCAGATGGTTGAGGTTGGAGGCTTGATGTCGCTCATGACGATGACAAAGGTGATGAGAAGGCTTGCTGGGGCAAGTCGATGGACCGAGGCCATCGACGCCTTCCATAAGATGGATCGGTTTGGAGTTGTGAAGGATACAAAGGCCATGAATGTGCTCCTGGACACACTGTGCAAGGAGAGGAGCGTGAAGCGCGCAAGAGGCGTCTTCCAAGAGCTGAGGGGAACAATACCTCCAGACGAGAACAGCTTCAATACTCTCGTGCATGGTTGGTGTAAGGCAAGGATGCTGAAGGAAGCTCTAGACACAATGGAGGAGATGAAGCAGCATGGATTCAGTCCTTCAGTGGTGACTTATACCAGCCTGGTAGAAGCATACTGCATGGAGAAAGATTTTCAGACTGTTTACGCTCTCTTGGACGAGATGCGCAAGAGGCGGTGTCCCCCAAATGTTGTTACATATACCATTTTGATGCATGCACTGGGGAAGGCTGGGAGAACGCGAGAAGCTTTGGATACCTTTGACAAGTTGAAGGAAGATGGTGTTGCTCCAGATGCTTCCTTCTACAACTCCCTGATCTACATACTTGGCAGAGCTGGGAGGTTGGAAGATGCATACTCTGTGGTTGAAGAAATGCGCACAACTGGAATCGCCCCTAACGTCACTACCTTCAACACCTTGATTTCTGCTGCTTGTGACCACTCTCAGGCAGAGAATGCCCTGAAGCTTCTGGTTAAGATGGAGGAGCAGTCATGCAATCCAGACATAAAGACATACACGCCATTGCTGAAGCTGTGCTGTAAAAGACAGTGGGTAAAGATACTTCTGTTCCTAGTGTGCCATATGTTTAGAAAGGACATTAGCCCTGATTTCAGCACTTACACCTTGTTGGTAAGCTGGCTGTGCAGAAATGGGAAGGTTGCCCAGTCTTGCCTGTTCTTGGAGGAAATGGTGTCAAAGGGTTTTGCTCCAAAGCAGGAGACATTTGATCTTGTGATGGAGAAGCTTGAGAAGAGGAATCTGCAGTCAGTGTACAAAAAGATTCAAGTTCTCAGGACGCAGGTAACAAATCTGAAGCATATGGAGTCCTTTCAATGAGAGGTCACTGATGGTGGACAACATTGTGCTGTGTTGTACAACACCTGTGGTCATGAATCTTAATATACTGCTCATTGGAATGTTTATGCAAACTTAATATGTACTGCTCATTGGAATGTTTATGCAAATGCGACT                     ]
[+] EMBL AK070923             [                                                       CCGGTGAGCTGAGCTCCGGCGAGGCGAGGTCGGAGATCCCACCGCCGTGTCGCCGCCGCCTCCAAGTTCTCCTTCCTCCCTCGCCTCTTCGCGCCGGCGAGGTCCCACCTTCGCCTTCCCGGATCGGCGCCGGTGAGGTCCGGCGACATATCGCGTCCCCGTGCATCCATCTACTCGGCCGGCGACCGCGCGCCCCTTCGCCGTCGTCTTATGCGCTTCCCACGGGGCCGCACGATCCGGACATGGGCGCGTTTGGGCGAAGACGCCGCCTATTCGCGGTTCGCGCCCCCCTCCTCTCCCGCTTCGTTTCTCCCCAATCTCCACCTCCACCTTCTGCGCGCGCCGCTGCCATTCACACGCATCGAGTAAGCTCGATCTCATCACCTCCCGAGCTGTAGTCTTTGCCCGCACTTGAGGTCGCGCCGGCCGCCGGGGCGGCAGAGAGAGAGAGAGAGAGAGAGAGGATTCAGAGAGGTGTTGTTTGGCCGCGCACGAGAGGTGTTCGACGATTTGCCCACCTGGTCTCCTCCAAGCCAGAGAGAGGTTATGCGCCGGTGCGGCCGAATTTTTTTCCCTCCGTCTCTCAAGTTCGTGTCTCATAGCGGCGGCAGGCTCTCCGCGACACGCTTCTCTACCACCGGGTTCGACCTCCCCGACTGGTTCAGGAACCCCAAGGACGATGGCTCATGCGCCGGCTTGGATGACGAGGAGGACGACATTTTTGTGCTCCCGACTGAACCCAACGTCTCGGATGAGCGAAGAAGCCAGAGCAGCACCTCCAGGTCGCTGTCGATCCGCCCTGGCTTTCCTGCAACTGCCTCCCATGAGGATGCTGAGTTCGAGGCCGACATCGATGAGGTCAGCAGGATCCTTAGTGCTCGTTTCGCGTCTCCTGAGGCCATTATGATAGCCATGGACTGCTGCTCTGTAAGGGTCACTGGCTGCCTTGTTGACAAGATCCTGACGAGGTTCAGCAATGATTGGGTGGCGGCATTCGGGTTCTTCATGTGGGTTGGCACTCAGGGAGGGTACTGCCATTGTGCCGATTCATATGACTTGATGGTAGATATACTGGGGAAGTTCAAGCAGTTTGATCTGATGTGGGGTTTGATCAATCAGATGGTTGAGGTTGGAGGCTTGATGTCGCTCATGACGATGACAAAGGTGATGAGAAGGCTTGCTGGGGCAAGTCGATGGACCGAGGCCATCGACGCCTTCCATAAGATGGATCGGTTTGGAGTTGTGAAGGATACAAAGGCCATGAATGTGCTCCTGGACACACTGTGCAAGGAGAGGAGCGTGAAGCGCGCAAGAGGCGTCTTCCAAGAGCTGAGGGGAACAATACCTCCAGACGAGAACAGCTTCAATACTCTCGTGCATGGTTGGTGTAAGGCAAGGATGCTGAAGGAAGCTCTAGACACAATGGAGGAGATGAAGCAGCATGGATTCAGTCCTTCAGTGGTGACTTATACCAGCCTGGTAGAAGCATACTGCATGGAGAAAGATTTTCAGACTGTTTACGCTCTCTTGGACGAGATGCGCAAGAGGCGGTGTCCCCCAAATGTTGTTACATATACCATTTTGATGCATGCACTGGGGAAGGCTGGGAGAACGCGAGAAGCTTTGGATACCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB636317             [                                                                               CGAGGTCGGAGATCCCACCGCCGTGTCGCCGCCGCCTCCAAGTTCTCCTTCCTCCCTCGCCTCTTCGCGCCGGCGAGGTCCCACCTTCGCCTTCCCGGATCGGCGCCGGTGAGGTCCGGCGACATATCGCGTCCCCGTGCATCCATCTACTCGGCCGGCGACCGCGCGCCCCTTCGCCGTCGTCTTATGCGCTTCCCACGGGGCCGCACGATCCGGACATGGGCGCGTTTGGGCGAAGACGCCGCCTATTCGCGGTTCGCGCCCCCCTCCTCTCCCGCTTCGTTTCTCCCCAATCTCCACCTCCACCTTCTGCGCGCGCCGCTGCCATTCACACGCATCGAGTAAGCTCGATCTCATCACCTCCCGAGCTGTAGTCTTTGCCCGCACTTGAGGTCGCGCCGGCCGCCGGGGCGGC  AGAGAGAGAGAGAGAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CB636318             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GGAGCAGTCATGCAATCCAGACATAAAGACATACACGCCATTGCTGAAGTTGTGCTGTAAAAGACAGTGGGTAAAGATACTTTTGTTCCTAGTGTGCCATATGTTTAGAAAGGACATTAGCCCTGATTTCAGCACTTACACCTTGTTGGTAAGCTGGCTGTGCAAAAATGGGAAGGTTGCCCAGTTTTGCCTGTTTTTGGAGGAAATGGTGTCAAAGGGTTTTGCTCCAAAGCAGGAGACATTTGATTTTGTGATGGAGAAGCTTGAGAAAAGGAATTTGCAGTCAGTGTACAAAAAGATTCAAGTTTTCAGGACGCAGGTAACAAATTTGAAGCATATGGAGTCCTTTCAATGAGAGGTCACTGATGGTGGACAACATTGTGCTGTGTTGTACAACACCTGTGGTCATGAATTTTAATAAACTGCTCATTGGAATGTTTATGCAAACTTAATATGTACTGCTCATTGGAATGTTTATGCAAATGCGATTG                    ]
[+] EMBL AT003389             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AGAAAGGACATTAGCCCTGATTTCAGCACTTACACCTTGTTGGTAAGCTGGCTGTGCAGAAATGGGAAGGTTGCCCAGTCTTGCCTGTTCTTGGAGGAAATGGTGTCAAAGGGTTTTGCTCCAAAGCAGGAGACATTTGATCTTGTGATGGAGAAGCTTGAGAAGAGGAATCTGCAGTCAGTGTACAAAAAGATTCAAGTTCTCAGGACGCAGGTAACAAATCTGAAGCATATGGAGTCCTTTCAATGAGAGGTCACTGATGGTGGACAACATTGTGCTGTGTTGTACAACACCTGTGGTCATGAATCTTAATATACTGCTCATTGGAATGTTTATGCAAACTTAATATGTACTGCTCATTGGAATGTTTATGCAAATGCGACTGTGATTCAGTAAAAAAAAAAA]


>consensus_8425#0 CTCGCGCTATCCCGTCTCCTCTCCTGGTTCCCTCTTTCTCCCGCTCCGTCCGCCTCCGGT GAGCTGAGCTCCGGCGAGGCGAGGTCGGAGATCCCACCGCCGTGTCGCCGCCGCCTCCAA GTTCTCCTTCCTCCCTCGCCTCTTCGCGCCGGCGAGGTCCCACCTTCGCCTTCCCGGATC GGCGCCGGTGAGGTCCGGCGACATATCGCGTCCCCGTGCATCCATCTACTCGGCCGGCGA CCGCGCGCCCCTTCGCCGTCGTCTTATGCGCTTCCCACGGGGCCGCACGATCCGGACATG GGCGCGTTTGGGCGAAGACGCCGCCTATTCGCGGTTCGCGCCCCCCTCCTCTCCCGCTTC GTTTCTCCCCAATCTCCACCTCCACCTTCTGCGCGCGCCGCTGCCATTCACACGCATCGA GTAAGCTCGATCTCATCACCTCCCGAGCTGTAGTCTTTGCCCGCACTTGAGGTCGCGCCG GCCGCCGGGGCGGCAGAGAGAGAGAGAGAGAGAGAGGATTCAGAGAGGTGTTGTTTGGCC GCGCACGAGAGGTGTTCGACGATTTGCCCACCTGGTCTCCTCCAAGCCAGAGAGAGGTTA TGCGCCGGTGCGGCCGAATTTTTTTCCCTCCGTCTCTCAAGTTCGTGTCTCATAGCGGCG GCAGGCTCTCCGCGACACGCTTCTCTACCACCGGGTTCGACCTCCCCGACTGGTTCAGGA ACCCCAAGGACGATGGCTCATGCGCCGGCTTGGATGACGAGGAGGACGACATTTTTGTGC TCCCGACTGAACCCAACGTCTCGGATGAGCGAAGAAGCCAGAGCAGCACCTCCAGGTCGC TGTCGATCCGCCCTGGCTTTCCTGCAACTGCCTCCCATGAGGATGCTGAGTTCGAGGCCG ACATCGATGAGGTCAGCAGGATCCTTAGTGCTCGTTTCGCGTCTCCTGAGGCCATTATGA TAGCCATGGACTGCTGCTCTGTAAGGGTCACTGGCTGCCTTGTTGACAAGATCCTGACGA GGTTCAGCAATGATTGGGTGGCGGCATTCGGGTTCTTCATGTGGGTTGGCACTCAGGGAG GGTACTGCCATTGTGCCGATTCATATGACTTGATGGTAGATATACTGGGGAAGTTCAAGC AGTTTGATCTGATGTGGGGTTTGATCAATCAGATGGTTGAGGTTGGAGGCTTGATGTCGC TCATGACGATGACAAAGGTGATGAGAAGGCTTGCTGGGGCAAGTCGATGGACCGAGGCCA TCGACGCCTTCCATAAGATGGATCGGTTTGGAGTTGTGAAGGATACAAAGGCCATGAATG TGCTCCTGGACACACTGTGCAAGGAGAGGAGCGTGAAGCGCGCAAGAGGCGTCTTCCAAG AGCTGAGGGGAACAATACCTCCAGACGAGAACAGCTTCAATACTCTCGTGCATGGTTGGT GTAAGGCAAGGATGCTGAAGGAAGCTCTAGACACAATGGAGGAGATGAAGCAGCATGGAT TCAGTCCTTCAGTGGTGACTTATACCAGCCTGGTAGAAGCATACTGCATGGAGAAAGATT TTCAGACTGTTTACGCTCTCTTGGACGAGATGCGCAAGAGGCGGTGTCCCCCAAATGTTG TTACATATACCATTTTGATGCATGCACTGGGGAAGGCTGGGAGAACGCGAGAAGCTTTGG ATACCTTTGACAAGTTGAAGGAAGATGGTGTTGCTCCAGATGCTTCCTTCTACAACTCCC TGATCTACATACTTGGCAGAGCTGGGAGGTTGGAAGATGCATACTCTGTGGTTGAAGAAA TGCGCACAACTGGAATCGCCCCTAACGTCACTACCTTCAACACCTTGATTTCTGCTGCTT GTGACCACTCTCAGGCAGAGAATGCCCTGAAGCTTCTGGTTAAGATGGAGGAGCAGTCAT GCAATCCAGACATAAAGACATACACGCCATTGCTGAAGCTGTGCTGTAAAAGACAGTGGG TAAAGATACTTCTGTTCCTAGTGTGCCATATGTTTAGAAAGGACATTAGCCCTGATTTCA GCACTTACACCTTGTTGGTAAGCTGGCTGTGCAGAAATGGGAAGGTTGCCCAGTCTTGCC TGTTCTTGGAGGAAATGGTGTCAAAGGGTTTTGCTCCAAAGCAGGAGACATTTGATCTTG TGATGGAGAAGCTTGAGAAGAGGAATCTGCAGTCAGTGTACAAAAAGATTCAAGTTCTCA GGACGCAGGTAACAAATCTGAAGCATATGGAGTCCTTTCAATGAGAGGTCACTGATGGTG GACAACATTGTGCTGTGTTGTACAACACCTGTGGTCATGAATCTTAATATACTGCTCATT GGAATGTTTATGCAAACTTAATATGTACTGCTCATTGGAATGTTTATGCAAATGCGACTG TGATTCAGTAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)